View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558_high_23 (Length: 240)
Name: NF5558_high_23
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 12997279 - 12997450
Alignment:
| Q |
10 |
acatcatcaagataatattatgtcacataaagggtcaagtaaaacccacttgtacaaaatgacaacatgcaccatttctatgtcattatcatcttaactg |
109 |
Q |
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| T |
12997279 |
acatcatcaagataatattgtgtcacataaagggtcaagtaaaacccacttgtacaaaatgacaacatgcaccatttctatgtcattatcatcttaactg |
12997378 |
T |
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| Q |
110 |
ccatgaaatctaaatgtttttggcttgaaaatattaaaaaatgatatcaccattttttgtgtgaaagtgatg |
181 |
Q |
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| T |
12997379 |
ccatgaaatctaaatgtttttggcttgaaaatattaaaaaatgatatcaccattttttgtgtgaaagtgatg |
12997450 |
T |
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Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 13071931 - 13072102
Alignment:
| Q |
10 |
acatcatcaagataatattatgtcacataaagggtcaagtaaaacccacttgtacaaaatgacaacatgcaccatttctatgtcattatcatcttaactg |
109 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13071931 |
acatcatcaagataatattgtgtcacataaagggtcaagtaaaacccacttgtacaaaatgacaacatgcaccatttctatgtcattatcatcttaactg |
13072030 |
T |
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| Q |
110 |
ccatgaaatctaaatgtttttggcttgaaaatattaaaaaatgatatcaccattttttgtgtgaaagtgatg |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13072031 |
ccatgaaatctaaatgtttttggcttgaaaatattaaaaaatgatatcaccattttttgtgtgaaagtgatg |
13072102 |
T |
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