View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558_high_3 (Length: 535)
Name: NF5558_high_3
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 15 - 516
Target Start/End: Original strand, 31009848 - 31010349
Alignment:
| Q |
15 |
ttattcttttgaaggaataggaatggttttgcctttggaatcagaagcaaaagataaagataaatttggtggagttttgggtttgggaatgtttctaatt |
114 |
Q |
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| T |
31009848 |
ttattcttttgaaggaataggaatggttttgcctttggaatcagaagcaaaagataaagataaatttggtggagttttgggtttgggaatgttcctaatt |
31009947 |
T |
|
| Q |
115 |
tttctgttgtatggaggttttgctactttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactg |
214 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009948 |
tttctattgtatggaggttttgctactttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactg |
31010047 |
T |
|
| Q |
215 |
ctttggttcaattaggtctttgtgtcaatctctttttcacctttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaa |
314 |
Q |
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| T |
31010048 |
ctttggtacaattaggtctttgtgtcaatctctttttcacctttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaa |
31010147 |
T |
|
| Q |
315 |
gtattgtttgtggcttaggtggttgttggttttggtggtaagtttagtcgcatttttggtacctaactttgctgattttttgtcactagttgggagcagt |
414 |
Q |
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| T |
31010148 |
gtattgtttgtggcttaggtggttgttggttttggtggtaagtttagtcgcatttttggtacctaactttgctgattttttgtcactagttgggagcagt |
31010247 |
T |
|
| Q |
415 |
gtttgtgttattcttagctttgtgtttcctgctttgtttcacttcttggtttttagagatgaattgggttggaaatgtttggtttttgatggagcaatta |
514 |
Q |
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| T |
31010248 |
gtttgtgttattcttagctttgtgtttcctgctttgtttcacttcttggtttttagagatgaattgggttggaaatgtttggtttttgatggagcaatta |
31010347 |
T |
|
| Q |
515 |
tg |
516 |
Q |
| |
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|| |
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| T |
31010348 |
tg |
31010349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 141 - 516
Target Start/End: Complemental strand, 9782707 - 9782332
Alignment:
| Q |
141 |
tttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactgctttggttcaattaggtctttgtgtc |
240 |
Q |
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||||||||| |||||||||||||||| |||| | | |||||||||| ||| |||| ||||| |||| || | ||||||||||||| || ||| | |
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| T |
9782707 |
tttaggttattttgcttttggtgaagaaactaaggatattattactaataatttaggtcaaggtgtgataggtgttatggttcaattagggctatgtatt |
9782608 |
T |
|
| Q |
241 |
aatctctttttcacctttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaagtattgtttgtggcttaggtggttgt |
340 |
Q |
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||| | ||| | || ||||||||||||||||||||||||||||| || |||||||||| |||||| | |||| ||||||||| ||| | |||||||||| |
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| T |
9782607 |
aatttgtttattacatttcctttgatgatgaatcctgtttatgaggtttttgagagaaggttttgtgattctaggtattgtttatgggtgaggtggttgt |
9782508 |
T |
|
| Q |
341 |
tggttttggtggtaagtttagtcgcatttttggtacctaactttgctgattttttgtcactagttgggagcagtgtttgtgttattcttagctttgtgtt |
440 |
Q |
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||||||||||||| ||||| || ||| ||||||| || || |||||||||||||||||||| ||||| || |||||||||||| ||||| | |||||||| |
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| T |
9782507 |
tggttttggtggtgagtttggtggcagttttggtgccaaattttgctgattttttgtcacttgttggaagtagtgtttgtgttgttcttggttttgtgtt |
9782408 |
T |
|
| Q |
441 |
tcctgctttgtttcacttcttggtttttagagatgaattgggttggaaatgtttggtttttgatggagcaattatg |
516 |
Q |
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|||||||||||||| | ||||||||| || || |||||||||||||| ||||||| ||||| ||||||||| |
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| T |
9782407 |
gcctgctttgtttcattgtatggtttttaaggaagagttgggttggaaatgcttggtttcagatggggcaattatg |
9782332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 16353116 - 16353200
Alignment:
| Q |
371 |
tggtacctaactttgctgattttttgtcactagttgggagcagtgtttgtgttattcttagctttgtgtttcctgctttgtttca |
455 |
Q |
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|||| ||||| |||||||||||| | ||||| ||||| |||||||| ||| || | ||| | ||||||||| |||||||| |||| |
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| T |
16353116 |
tggtgcctaattttgctgattttctttcacttgttggaagcagtgtgtgtattgtgcttggatttgtgttttctgctttgattca |
16353200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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