View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558_low_11 (Length: 340)
Name: NF5558_low_11
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 50200883 - 50200552
Alignment:
| Q |
1 |
acaggtagggttcttctgccctctttgttgctttttcaaaacatgaaatcaaatgttatgattattcattaattcctcatttcaaattaatctacatact |
100 |
Q |
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| T |
50200883 |
acaggtagggttcttctgccctctctgttgctttttcaaaacatgaaatcaaatgttatgattattcattaattcctcatttcaaattaatctacatact |
50200784 |
T |
|
| Q |
101 |
aagctgaacgtgaaatttccaatttactagctgtttaattggtaattgttgatagtatattagcagtagataattaaga-tataccttctacatgtatta |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50200783 |
aagctgaacgtgaaatttccaatttactagctgtttaattggtaattgttgatagtatattagcagtagataattaagattataccttctacatgtatta |
50200684 |
T |
|
| Q |
200 |
taagacttaattcaatgtgtaaacaagcatgaaccttttcaaattatatgtgtgtaagattaagtttgtaaaccttgttaacattctaaaaccatttata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50200683 |
taagacttaattcaatgtgtaaacaagcatgaaccttttcaaattatatgtgtgtaagattaagtttgtaaaccttgttaacattctaaaaccatttata |
50200584 |
T |
|
| Q |
300 |
tataaatgctaaaaattttaatgaatcctttg |
331 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |
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| T |
50200583 |
tataaatgctaaattttttaatgaatcctttg |
50200552 |
T |
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