View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558_low_12 (Length: 326)
Name: NF5558_low_12
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_low_12 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 44798157 - 44798467
Alignment:
| Q |
12 |
agcataggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaatta |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
44798157 |
agcagaggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagcaattatgaattatgatatttaaagaagaaatta |
44798256 |
T |
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| Q |
112 |
gtgataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagcccccaattcacagcggaacacattatcatcttccattaacaaaca |
211 |
Q |
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| T |
44798257 |
gtgataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagcccccaattcacagcggaacacattatcatcttccattaacaaaca |
44798356 |
T |
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| Q |
212 |
acattgagaatagtgaatgaaacataacgaacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtgttgaccttcgagcacgaag |
311 |
Q |
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| T |
44798357 |
acattgagaatagtgaatgaaacat----aacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaag |
44798452 |
T |
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| Q |
312 |
actcaatagatgaag |
326 |
Q |
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|||||||||| |||| |
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| T |
44798453 |
actcaatagacgaag |
44798467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 35161941 - 35161649
Alignment:
| Q |
19 |
gacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaattagtgataa |
118 |
Q |
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| T |
35161941 |
gacgaaggaggatgttgcattttttgacatacgtctgagagagaataataaagaa------attatgaattatgatatttatagaagaaattagtgataa |
35161848 |
T |
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| Q |
119 |
gtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagcccccaattcac---agcggaacacattatcatcttccattaacaaacaacat |
215 |
Q |
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| T |
35161847 |
gtgtgaattggggcttagggtttgttcaattactcaaaatccctaagcccc-aattctctaaagtggaacacattatcatcttccattaacaaacaacat |
35161749 |
T |
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| Q |
216 |
tgagaatagtgaatgaaacataacgaacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtgttgaccttcgagcacgaagactc |
315 |
Q |
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| T |
35161748 |
tgagaatagtgaatgaaacataacgaacgaac----aacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaagactc |
35161653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 114 - 326
Target Start/End: Complemental strand, 39840149 - 39839939
Alignment:
| Q |
114 |
gataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagcccccaattc---acagcggaacac---attatcatcttccattaaca |
207 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| |||| ||||||| |||||||||||||||||||| |
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| T |
39840149 |
gataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaag-ccacaattctctacagtggaacacattattatcatcttccattaaca |
39840051 |
T |
|
| Q |
208 |
aacaacattgagaatagtgaatgaaacataacgaacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtgttgaccttcgagcac |
307 |
Q |
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| T |
39840050 |
aacaatattgagaatagtgaatgaaacat----aacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtgg---tgaccttcgagcac |
39839958 |
T |
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| Q |
308 |
gaagactcaatagatgaag |
326 |
Q |
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| T |
39839957 |
gaagactcaatagacgaag |
39839939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 44631177 - 44631292
Alignment:
| Q |
12 |
agcataggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaatta |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
44631177 |
agcagaggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagcaattatgaattatgatatttaaagaagaaatta |
44631276 |
T |
|
| Q |
112 |
gtgataagtgtgaatt |
127 |
Q |
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|||||||||||||||| |
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| T |
44631277 |
gtgataagtgtgaatt |
44631292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 39844923 - 39844872
Alignment:
| Q |
255 |
agaacaatataaatgttaaactcactcaccaggtggtgttgaccttcgagca |
306 |
Q |
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| T |
39844923 |
agaataatataaatgttaaactcactcaccaggtggtggtgaccttcgagca |
39844872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 39845024 - 39844963
Alignment:
| Q |
146 |
aatttctcaaaatccctaagcccccaattc---acagcggaacacattatcatcttccattaa |
205 |
Q |
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| T |
39845024 |
aatttctcaaaatccctaagcccc-aattctctacagtggaacacattatcatcttccattaa |
39844963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 39840227 - 39840176
Alignment:
| Q |
35 |
gcattttttgatgtacgtctgagagagaataataaagaagaagtaattatga |
86 |
Q |
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| T |
39840227 |
gcattttttgacgtacgtctgagagagaataagaaagaagaaccaattatga |
39840176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 39839889 - 39839849
Alignment:
| Q |
19 |
gacgaaggaggatgttgcattttttgatgtacgtctgagag |
59 |
Q |
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||||||||| ||||||||||||||||| || |||||||||| |
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| T |
39839889 |
gacgaaggatgatgttgcattttttgaagtgcgtctgagag |
39839849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 39845111 - 39845062
Alignment:
| Q |
35 |
gcattttttgatgtacgtctgagagagaataataaagaagaagtaattatga |
86 |
Q |
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|||||||||||||||||||| || ||||||| |||||||||| |||||||| |
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| T |
39845111 |
gcattttttgatgtacgtct--gaaagaataagaaagaagaagcaattatga |
39845062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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