View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558_low_13 (Length: 310)
Name: NF5558_low_13
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_low_13 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 437529 - 437802
Alignment:
| Q |
16 |
attatctgatgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaattcccttgt |
115 |
Q |
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| T |
437529 |
attatctgatgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacgattcccttgt |
437628 |
T |
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| Q |
116 |
ccaactatatataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
437629 |
ccaactatatataaattgcaataaaaattttctagttcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaat |
437728 |
T |
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| Q |
216 |
cattgttgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatcc |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
437729 |
cattgttgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatcc |
437802 |
T |
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Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 22 - 289
Target Start/End: Complemental strand, 28609369 - 28609102
Alignment:
| Q |
22 |
tgatgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaattcccttgtccaact |
121 |
Q |
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|||||| ||||| ||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| ||| ||||||||| ||| || ||||||||| |
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| T |
28609369 |
tgatgctaaaatatcccctaaaaccccaagttctggacagtcacaccattccaataagtttaaaaagactcgagtgttcctacgatttccctgtccaact |
28609270 |
T |
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| Q |
122 |
atatataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgt |
221 |
Q |
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| T |
28609269 |
atgtataaatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgt |
28609170 |
T |
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| Q |
222 |
tgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatcc |
289 |
Q |
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| T |
28609169 |
tgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctcactatcc |
28609102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 289
Target Start/End: Complemental strand, 13653240 - 13652973
Alignment:
| Q |
22 |
tgatgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaattcccttgtccaact |
121 |
Q |
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| T |
13653240 |
tgatgccaacatatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatttctatgatgcccttgtccaact |
13653141 |
T |
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| Q |
122 |
atatataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgt |
221 |
Q |
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| T |
13653140 |
atgtataaatcacaaccaaatttgtctaaatcatcaaggattgtgggaatatcttcacctgaatggacatcaacctctgaataggatataaaatcattgt |
13653041 |
T |
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| Q |
222 |
tgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatcc |
289 |
Q |
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| T |
13653040 |
tattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatcc |
13652973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 289
Target Start/End: Complemental strand, 13660740 - 13660473
Alignment:
| Q |
22 |
tgatgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacaattcccttgtccaact |
121 |
Q |
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| T |
13660740 |
tgatgccaacatatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatttctatgatgcccttgtccaact |
13660641 |
T |
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| Q |
122 |
atatataaattgcaataaaaattttctaattcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgt |
221 |
Q |
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|| ||||||| || ||| || ||||| ||||||||| |||||||||||||||||| ||||||||||| ||| || ||||| |||||||||||||||| |
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| T |
13660640 |
atgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctccgaatatgatatagaatcattgt |
13660541 |
T |
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| Q |
222 |
tgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatcc |
289 |
Q |
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| T |
13660540 |
tattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatcc |
13660473 |
T |
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