View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558_low_14 (Length: 310)
Name: NF5558_low_14
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 12997719 - 12998010
Alignment:
| Q |
1 |
aatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgcttcctaataacaaata |
100 |
Q |
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| T |
12997719 |
aatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgtttcctaataacaaata |
12997817 |
T |
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| Q |
101 |
aaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagtaaccttatccttaacc |
200 |
Q |
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| T |
12997818 |
aaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagtaaccttatccttaacc |
12997917 |
T |
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| Q |
201 |
acacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatgaatgatcctttctcatacttt |
293 |
Q |
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| T |
12997918 |
acacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatgaatgatcctttctcatacttt |
12998010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 13072359 - 13072650
Alignment:
| Q |
1 |
aatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgcttcctaataacaaata |
100 |
Q |
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|||||||||| |||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
13072359 |
aatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgtttcctaataacaaata |
13072457 |
T |
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| Q |
101 |
aaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagtaaccttatccttaacc |
200 |
Q |
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| T |
13072458 |
aaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagtaaccttatccttaacc |
13072557 |
T |
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| Q |
201 |
acacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatgaatgatcctttctcatacttt |
293 |
Q |
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| T |
13072558 |
acacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatgaatgatcctttctcatacttt |
13072650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 293
Target Start/End: Original strand, 28139031 - 28139172
Alignment:
| Q |
152 |
tacttactttccccaccaaagttcattttcagtaaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgcc |
251 |
Q |
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||||||||||||||||||||| ||||| ||||| | | |||||| || |||||||| ||||| ||| | || || |||||||| || |||||||| ||| |
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| T |
28139031 |
tacttactttccccaccaaagctcattctcagtgagatcatccttgacgacacgcttatctcttggacaccgtccggtcttggcccccgaaagtgtagcc |
28139130 |
T |
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| Q |
252 |
attgctccattggaagtgatgaatgatcctttctcatacttt |
293 |
Q |
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| T |
28139131 |
aatgctccggttgaagttatgaacgatcctttctcatacttt |
28139172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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