View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5558_low_15 (Length: 309)

Name: NF5558_low_15
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5558_low_15
NF5558_low_15
[»] chr6 (11 HSPs)
chr6 (20-290)||(31230119-31230389)
chr6 (26-233)||(31214573-31214781)
chr6 (36-204)||(30955602-30955770)
chr6 (23-171)||(31145101-31145249)
chr6 (23-171)||(31189159-31189307)
chr6 (23-171)||(31200966-31201114)
chr6 (23-178)||(31171407-31171562)
chr6 (23-174)||(31224842-31224993)
chr6 (36-204)||(30945342-30945510)
chr6 (23-175)||(30961337-30961489)
chr6 (23-178)||(30992819-30992974)
[»] chr8 (1 HSPs)
chr8 (34-151)||(44036028-44036145)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 31230119 - 31230389
Alignment:
Q  20 gaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230119 gaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggca 31230218  T
Q  120 acacgaattctttggaaataccaccaaaacctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattttggggtaaatgttcc 219  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230219 acaagaattgtttggaaataccaccaaaacctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattttggggtaaatgttcc 31230318  T
Q  220 acactgcattatttatcatatttgttgtatattctaatatcacattgtaaagcaagtggatcttatatgtg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230319 acactgcattatttatcatatttgttgtatattctaatatcacattgtaaagcaagtggatcttatatgtg 31230389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 31214573 - 31214781
Alignment:
Q  26 gcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaacacga 125  Q
    |||| |||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||| ||||||||||||||||||||   ||    
T  31214573 gcaaagagaatgaccatagtaggattatggtgcattcaaacacttccaaatgatagacctgcaatgagtagagttattgaaatgttagaaggcaatgtga 31214672  T
Q  126 attctttggaaataccaccaaaacctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattt-tggggtaaatgttccacact 224  Q
     ||| ||||||||||| |||||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||| ||  |||| | |||||||||    
T  31214673 gttcattggaaatacccccaaaacctattctttcttctcctactagaccagtaccaaaatcgtcagcttcatgaaatttatgttgtaagtcttccacact 31214772  T
Q  225 gcattattt 233  Q
    |||||||||    
T  31214773 gcattattt 31214781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 30955602 - 30955770
Alignment:
Q  36 tgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaacacgaat-tctttgg 134  Q
    |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| | || |||| || || |    
T  30955602 tgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtcctt-g 30955700  T
Q  135 aaataccaccaaaacctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattt 204  Q
    ||||||||||||||||| |  |||||||||||||||||||| ||   ||||| ||| |||| ||||||||    
T  30955701 aaataccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaattt 30955770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 31145249 - 31145101
Alignment:
Q  23 attgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaaca 122  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||  ||||    
T  31145249 attgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagttattgaaatgttagaagttaaca 31145150  T
Q  123 cgaattctttggaaataccaccaaaacctattctttcttctcctactag 171  Q
     ||||||  | ||||||||||| |||||  | |||||||||||||||||    
T  31145149 tgaattcacttgaaataccacccaaaccgttgctttcttctcctactag 31145101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 31189307 - 31189159
Alignment:
Q  23 attgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaaca 122  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||  ||||    
T  31189307 attgcaaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaaca 31189208  T
Q  123 cgaattctttggaaataccaccaaaacctattctttcttctcctactag 171  Q
     |||||   | ||||||||||| |||||   ||||||||| ||||||||    
T  31189207 tgaatttacttgaaataccacctaaaccatatctttcttcacctactag 31189159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 31201114 - 31200966
Alignment:
Q  23 attgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaaca 122  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||  ||||    
T  31201114 attgcaaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaaca 31201015  T
Q  123 cgaattctttggaaataccaccaaaacctattctttcttctcctactag 171  Q
     |||||   | ||||||||||| |||||   ||||||||| ||||||||    
T  31201014 tgaatttacttgaaataccacctaaaccatatctttcttcacctactag 31200966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 31171562 - 31171407
Alignment:
Q  23 attgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaaca 122  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||  |  |    
T  31171562 attgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttacaa 31171463  T
Q  123 cgaattctttggaaataccaccaaaacctattctttcttctcctactagatcagta 178  Q
     ||||||  ||||||| |||||||||||  | | ||| ||||| ||||||||||||    
T  31171462 tgaattcactggaaatgccaccaaaaccattacattcatctcccactagatcagta 31171407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 31224842 - 31224993
Alignment:
Q  23 attgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaaca 122  Q
    |||||||||||| |||||||||||||||| ||||| |||||||| ||||| |||||||| || |||||||||| |||||||||||||||||| |  | ||    
T  31224842 attgcaaggagaatgaccattgtaggtttgtggtgtattcaaacgtttcctaatgataggcctacaatgagtaaagtgattgaaatgttagatgttagca 31224941  T
Q  123 cgaattctttggaaataccaccaaaacctattctttcttctcctactagatc 174  Q
     |||||| |||||||| |||||||||||  | ||||||||||| ||||||||    
T  31224942 tgaattcgttggaaatgccaccaaaaccattgctttcttctccgactagatc 31224993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 30945342 - 30945510
Alignment:
Q  36 tgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaacacgaat-tctttgg 134  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| | || |||| || || |    
T  30945342 tgactattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatatcctt-g 30945440  T
Q  135 aaataccaccaaaacctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattt 204  Q
    ||||||||||||||||| |  ||||||||||||| |||||| ||   ||||| ||| |||| ||||||||    
T  30945441 aaataccaccaaaacctttggtttcttctcctacaagatcattattggaatcttcaacttcttgaaattt 30945510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 30961337 - 30961489
Alignment:
Q  23 attgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaaca 122  Q
    ||||||| |||| |||||||||| ||||| ||||| |||||||||||||| ||||  || || |||||||||| |||  |||||||||||||||  ||||    
T  30961337 attgcaaagagaatgaccattgtgggtttgtggtgtattcaaacatttcctaatggcaggcctacaatgagtaaagtagttgaaatgttagaagttaaca 30961436  T
Q  123 cgaattctttggaaataccaccaaaacctattctttcttctcctactagatca 175  Q
     |||||| ||||||||||||||||||||  | ||||| |||||||||||||||    
T  30961437 tgaattcattggaaataccaccaaaaccattgctttcgtctcctactagatca 30961489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 30992819 - 30992974
Alignment:
Q  23 attgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaaca 122  Q
    ||||||| |||  ||||||||||  |||| ||||| |||||||||||||| ||||  ||||| |||||||||| |||  |||||||||||||||   |||    
T  30992819 attgcaaagaggatgaccattgtgagtttgtggtgtattcaaacatttcctaatggcagacctacaatgagtaaagtagttgaaatgttagaagttgaca 30992918  T
Q  123 cgaattctttggaaataccaccaaaacctattctttcttctcctactagatcagta 178  Q
      ||||| ||||||||||||||||||||  | ||||| ||||||||||||||||||    
T  30992919 ttaattcgttggaaataccaccaaaaccattgctttcgtctcctactagatcagta 30992974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 44036028 - 44036145
Alignment:
Q  34 attgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaacacgaattctttg 133  Q
    |||||| || || ||||| ||||||||||||||| |||| | | ||||||| ||||| |||| ||||||||| ||||| || || | || | ||||||||    
T  44036028 attgactatggttggtttgtggtgcattcaaacaattcctactcatagacctacaataagtaaagtgattgatatgttggatggtagcatggattctttg 44036127  T
Q  134 gaaataccaccaaaacct 151  Q
    ||||| ||||||||||||    
T  44036128 gaaatgccaccaaaacct 44036145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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