View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558_low_19 (Length: 249)
Name: NF5558_low_19
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 28920712 - 28920928
Alignment:
| Q |
14 |
aaatccagctcaccactcaatactgcctctcaacactttaattttaacagcaagagtgcannnnnnnnnnnnnaaaacaactaaagcttttgagtaaaac |
113 |
Q |
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| T |
28920712 |
aaatccagctcaccactcaatactgcctctcaacactttaattttaacagcaagaatgcagttttttatatttaaaacaactaaagcttttgagtaaaac |
28920811 |
T |
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| Q |
114 |
attcataatcgtcatttaaccaaattagagtgaaaccttttctttcaaagtatttttcaaatgattaaaatcaatgccacgttttataaatggttttcat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28920812 |
attcataatcgtcatttaaccaaattagagtgaaaccttttctttcaaagtatttttcaaatgattaaaatcaacgccacgttttataaatggttttcat |
28920911 |
T |
|
| Q |
214 |
aacagttggcttagaac |
230 |
Q |
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||||||||||||||||| |
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| T |
28920912 |
aacagttggcttagaac |
28920928 |
T |
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