View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5558_low_2 (Length: 622)
Name: NF5558_low_2
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 44 - 611
Target Start/End: Original strand, 4109407 - 4109982
Alignment:
| Q |
44 |
gtttcaaacaaataatggattcaatcaggacaaacacacgctggcgcttgctggaacgggtccatcacttgaggatagatgggtgactatggtagatatg |
143 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||| || || || | |||| ||||||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
4109407 |
gtttcgaacaaataatggattcagacaggtcaaacatactctagctcctgctagaacgggtccatcacttgaggatagatggatgactatagaagatatg |
4109506 |
T |
|
| Q |
144 |
agttttcttatttgatagagatataagtatgtggtatttctactgaacaagaaaggacgctcataaactctcttttttc---cctttatacgacgcacct |
240 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4109507 |
agttttcttatttgatagaaatataagtatgtggtatttctactaaacaaaaaaggacgctcataaactctcttttttttttcctttatacgacgcacct |
4109606 |
T |
|
| Q |
241 |
ccaagttacaaagcatgatcaccaaatgttggcatggttgacatggagaattcccatccttcgcaaaacaagatttcagacactaccaactactgtcaca |
340 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4109607 |
ccaagttacaaagcatgatcaccaaatgtcggcatggttgacatggagaattcccatccttcctaaaacaagatttcagacactaccaactactgtcaca |
4109706 |
T |
|
| Q |
341 |
ccacta-------tcaacacacaaatcagaaagactcctatacgtagtcctcaagcacccaccatccaaccaaggattactccataaagaagaattatat |
433 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
4109707 |
ccactatcaacactcaacacacaaatcagaaagactcctagacctagtcctcaagcacccacc--caaaccaaggattactccataaagaagtattatat |
4109804 |
T |
|
| Q |
434 |
ctattatcaataatatgcataaccccttccttaaaccaactctcttcgccaccttctatgctctttccaatcaaacataaatttttccaccacattgatg |
533 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4109805 |
atgttatcaataatgtgcataaccccttccttaaaccaactatcttcgccaccttctatgctctttccaatcaaacataaattcttccaccacattgatg |
4109904 |
T |
|
| Q |
534 |
tcattcttcccctctccttataagatcctcttcaaccccatatttagcagctaaaacattaaaccacaaccctctctg |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4109905 |
tcattcttcccctctccttataagatcctcttcaacctcatatttagcagctaaaacattaaaccacaaccctctctg |
4109982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 603
Target Start/End: Original strand, 13808265 - 13808350
Alignment:
| Q |
517 |
tttccaccacattgatgtcattcttcccctctccttataagatcctcttcaaccccatatttagcagctaaaacattaaaccacaac |
603 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||| ||| || ||||||||| |||||| |||| |||||| | |||||||||||| |
|
|
| T |
13808265 |
tttccaccacattgaggcctttcttcccctctcctaatacgaccctcttcaa-cccatacttagtagctaacattttaaaccacaac |
13808350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University