View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558_low_24 (Length: 240)
Name: NF5558_low_24
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15369430 - 15369206
Alignment:
| Q |
1 |
ctacattaatattttgaaaacccgttataaacattttccgtgtgtaaaa--gaattgaagttgaaatttcacactctcatcactttaactaacaatgctc |
98 |
Q |
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| T |
15369430 |
ctacatttatattttgaaaacccgttataaacattttccgtgtgtaaaaaagaattgaagttgaaatttcacactctcatcactttaactaacaatgctc |
15369331 |
T |
|
| Q |
99 |
cgagcaactgcatttccggcaccgaacaattccacggtgattctctctcgaaattacacgtgtacttatcttgaacccacacgtgtcattttccctcgct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15369330 |
cgagcaactgcatttccggcaccgaacaattccacggtgattctctctcgaaatcacacgtgtccttatcttgaacccacacgtgtcattttccctcgct |
15369231 |
T |
|
| Q |
199 |
cttctttcatttcacggttacaatt |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
15369230 |
cttctttcatttcacggttacaatt |
15369206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 49398789 - 49398750
Alignment:
| Q |
184 |
tcattttccctcgctcttctttcatttcacggttacaatt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
49398789 |
tcattttccctcgctcttctttcatttcacggttacaatt |
49398750 |
T |
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