View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558_low_26 (Length: 231)
Name: NF5558_low_26
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 16654968 - 16655080
Alignment:
| Q |
110 |
taccgtgttgtagagtgtgtgcttggcacgcctcttggcttcgcttgtgtgtggttt-gaggtgttttgtatggtgatccgtctatatacggcgtcgtct |
208 |
Q |
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| T |
16654968 |
taccgtgttgtagagtgtgtgctaggcacgccccttggcttcgcttgtgtgtggtttgggggtgttttgtatggtgatccgtctatatacggcgtcgtct |
16655067 |
T |
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| Q |
209 |
ttgttgccctttg |
221 |
Q |
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| T |
16655068 |
ttgttgccttttg |
16655080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 17629328 - 17629440
Alignment:
| Q |
110 |
taccgtgttgtagagtgtgtgcttggcacgcctcttggcttcgcttgtgtgtggttt-gaggtgttttgtatggtgatccgtctatatacggcgtcgtct |
208 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
17629328 |
taccgtgttgtagagtgtgtgctaggcacgccccttggcttcgcttgtgtgtggtttgggggtgttttgtatggtgatccgtctatatacggcgtcgtct |
17629427 |
T |
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| Q |
209 |
ttgttgccctttg |
221 |
Q |
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|||||||| |||| |
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| T |
17629428 |
ttgttgccttttg |
17629440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 10333665 - 10333553
Alignment:
| Q |
1 |
ttcgtagtaattatttatggcgctctttccgcacaagatcaccccttttcacattctaaacatccttccatctctcgtctgtgcacaatcctctttccca |
100 |
Q |
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| T |
10333665 |
ttcgtagtaattatttatggcgcactttccgaacaagatcaacccatctcacattctaaccatccttccatctctcgtcagtgcacaatcctctttccca |
10333566 |
T |
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| Q |
101 |
accaagtcatacc |
113 |
Q |
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| T |
10333565 |
accaagtcatacc |
10333553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 12863652 - 12863760
Alignment:
| Q |
113 |
cgtgttgtagagtgtgtgcttggcacgcctcttggcttcgcttgtgtgtggtttgaggtgttttgtatggtgatccgtctatatacggcgtcgtctttgt |
212 |
Q |
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|||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||| |
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| T |
12863652 |
cgtgttgtagcgtgtgtgctaggcacgccccttggcttcgcttgtgtgtggtttgaggtgttttgtatggtgatccatctatatacgacgtcatctttgt |
12863751 |
T |
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| Q |
213 |
tgccctttg |
221 |
Q |
| |
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|||| |||| |
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| T |
12863752 |
tgccttttg |
12863760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 15967878 - 15967988
Alignment:
| Q |
110 |
taccgtgttgtagagtgtgtgcttggcacgcctcttggcttcgcttgtgtgtggtttgaggtgttttgtatggtgatccgtctatatacggcgtcgtctt |
209 |
Q |
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||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |
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| T |
15967878 |
taccgtgttgtagcatgtgtgctaggcacaccccttggcttcgcttgtgtgtggtttgaggtgttttgtat-gtgatccgtctatatacgacatcgtctt |
15967976 |
T |
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| Q |
210 |
tgttgccctttg |
221 |
Q |
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||||||| |||| |
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| T |
15967977 |
tgttgccttttg |
15967988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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