View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5558_low_4 (Length: 483)

Name: NF5558_low_4
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5558_low_4
NF5558_low_4
[»] chr1 (3 HSPs)
chr1 (1-281)||(10333593-10333873)
chr1 (403-466)||(10333960-10334023)
chr1 (298-353)||(10334059-10334114)
[»] chr7 (3 HSPs)
chr7 (310-356)||(37473678-37473724)
chr7 (310-356)||(15905640-15905686)
chr7 (314-356)||(42712026-42712068)
[»] chr3 (2 HSPs)
chr3 (299-356)||(13448376-13448433)
chr3 (299-356)||(2667915-2667972)
[»] chr5 (2 HSPs)
chr5 (298-356)||(16773859-16773917)
chr5 (298-356)||(29173542-29173600)
[»] chr2 (1 HSPs)
chr2 (310-356)||(33582037-33582083)
[»] chr8 (1 HSPs)
chr8 (312-356)||(40791861-40791905)
[»] chr4 (1 HSPs)
chr4 (298-354)||(4185145-4185201)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 10333593 - 10333873
Alignment:
Q  1 agatggaaggatggttagaatgtgaaatgggttgatcttgtgcggaaagtgcgccataaataattactacgaaccacatgttgtaatagtctatgataca 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10333593 agatggaaggatggttagaatgtgagatgggttgatcttgttcggaaagtgcgccataaataattactacgaaccacatgttgtaatagtctatgataca 10333692  T
Q  101 aaagtttaatttacttctctcttctctcnnnnnnnnnngaagtttaatttactaaattttcttcaaagatattctatggaaaatatatgttcacacttct 200  Q
    ||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10333693 aaagtttaatttacttctctcttctctcaaaaagaa---aagtttaatttactaaattttcttcaaagatattctatggaaaatatatgttcacacttct 10333789  T
Q  201 agttatactggtcatatc--nnnnnnntgtataggtatacagtttcttt-gataaggtcatggagaacttcatcaacacttttt 281  Q
    ||||||||||| |||| |         ||| |||||||||||||| ||| ||||||||||| ||||| ||||||| ||||||||    
T  10333790 agttatactggccataccaaaaaaaaatgtctaggtatacagtttttttggataaggtcattgagaagttcatcagcacttttt 10333873  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 403 - 466
Target Start/End: Complemental strand, 10334023 - 10333960
Alignment:
Q  403 aagaagtagagaaaaagatccatgttattcaaaccagattaaagcaacaggccacactgatatt 466  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10334023 aagaagtagagaaaaagatccatgttattcaaacgagattaaagcaacaggccacactgatatt 10333960  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 10334114 - 10334059
Alignment:
Q  298 ctcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaattta 353  Q
    ||||||| |||||||| ||  |||||||||||||| ||||||||||||||||||||    
T  10334114 ctcctcgaggtatcagattttattttccctaatgtcaatttaggtgggctaattta 10334059  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 37473678 - 37473724
Alignment:
Q  310 tcaggttcgattttccctaatgttaatttaggtgggctaatttagct 356  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||    
T  37473678 tcaggttcgattctccctaatgtcaatttaggtgggttaatttagct 37473724  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 15905686 - 15905640
Alignment:
Q  310 tcaggttcgattttccctaatgttaatttaggtgggctaatttagct 356  Q
    |||||||||||| |||||||||| ||||| |||||| ||||||||||    
T  15905686 tcaggttcgattctccctaatgtcaatttgggtgggttaatttagct 15905640  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 42712026 - 42712068
Alignment:
Q  314 gttcgattttccctaatgttaatttaggtgggctaatttagct 356  Q
    |||||||| |||||| ||| |||||||||||||||||||||||    
T  42712026 gttcgattctccctagtgtcaatttaggtgggctaatttagct 42712068  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 13448376 - 13448433
Alignment:
Q  299 tcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaatttagct 356  Q
    |||||| ||| |||||||| |||||| ||| ||| |||||||||||||||||||||||    
T  13448376 tcctcgaggtctcaggttcaattttctctactgtcaatttaggtgggctaatttagct 13448433  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 2667915 - 2667972
Alignment:
Q  299 tcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaatttagct 356  Q
    |||||| ||| |||||||||||| || ||| ||| ||||||||||||||| |||||||    
T  2667915 tcctcgaggtctcaggttcgattatctctagtgtcaatttaggtgggctagtttagct 2667972  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 16773859 - 16773917
Alignment:
Q  298 ctcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaatttagct 356  Q
    ||||||| ||| |||||||||||| || || |||  |||||||||||||||||||||||    
T  16773859 ctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaatttagct 16773917  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 29173542 - 29173600
Alignment:
Q  298 ctcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaatttagct 356  Q
    ||||||| ||| |||||||||||| || ||  ||| |||||||||||||||||||||||    
T  29173542 ctcctcgaggtttcaggttcgattatctctggtgtcaatttaggtgggctaatttagct 29173600  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 33582037 - 33582083
Alignment:
Q  310 tcaggttcgattttccctaatgttaatttaggtgggctaatttagct 356  Q
    |||||||||||| || ||||||| ||||||||||| |||||||||||    
T  33582037 tcaggttcgattctctctaatgtcaatttaggtggactaatttagct 33582083  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 40791905 - 40791861
Alignment:
Q  312 aggttcgattttccctaatgttaatttaggtgggctaatttagct 356  Q
    ||||||||||||| ||| ||| |||||| ||||||||||||||||    
T  40791905 aggttcgattttctctagtgtcaatttaagtgggctaatttagct 40791861  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 4185145 - 4185201
Alignment:
Q  298 ctcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaatttag 354  Q
    ||||||| ||| ||| | |||||| |||||| ||| |||||||||||||||||||||    
T  4185145 ctcctcgaggtctcaagatcgattctccctagtgtcaatttaggtgggctaatttag 4185201  T

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