View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558_low_5 (Length: 473)
Name: NF5558_low_5
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 6624001 - 6624453
Alignment:
| Q |
1 |
aaatcaaattatgatatgtataatgaagtggcctgaataaaaattgacaggagccataattttattgtaggggcttactccttcatattcactccaagga |
100 |
Q |
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| T |
6624001 |
aaatcaaattatgatatgtataatgaagtggcctgaataaaaattgacaggagccagaattttattgtaggggcttactccttcatattcactccaagga |
6624100 |
T |
|
| Q |
101 |
ggctttcccgtgaacatttcaataattgtacaacccaaactccaaatatcaattgcaaaagctagatcagagctgttatctttatgtatgaccgcttgca |
200 |
Q |
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| T |
6624101 |
ggctttcccgtgaacatttcaataattgtacaacccaaactccaaatatcaattgcaaaagctagatcagagctgttatctttatgtatgaccgcttgca |
6624200 |
T |
|
| Q |
201 |
taagctgtatgagaagcaagtttgagtaaagaacacgtgatacataaaagagtaatgtagagttcaaatatatacaaatatacctctggagccatccaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6624201 |
taagctgtatgagaagcaagtttgagtaaagaacacgtgatacataagagagtaatttagagttcaa--atatacaaatatacctctggagccatccaat |
6624298 |
T |
|
| Q |
301 |
atggacttcctttcaaagacagatcagcagaatgcccagttagctgtggaaacagagattccaagactattaataggcgcaaagtaactactggcaacaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
6624299 |
atggacttcctttcaaagacagatcagcagaatgcccagttagctgtggaaacagagattccaagactattaataggtgcaaagtaactactggcagcaa |
6624398 |
T |
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| Q |
401 |
attggtggtgaaagctactaaaattcaaaagaaaggataattctatgtcatacat |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6624399 |
attggtggtgaaagctactaaaattcaaaagaaaggataattctatgtcatacat |
6624453 |
T |
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