View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5558_low_6 (Length: 462)

Name: NF5558_low_6
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5558_low_6
NF5558_low_6
[»] chr1 (29 HSPs)
chr1 (11-444)||(5389416-5389849)
chr1 (11-316)||(41920234-41920538)
chr1 (11-319)||(31585755-31586063)
chr1 (11-321)||(30685899-30686209)
chr1 (11-297)||(46692814-46693100)
chr1 (18-318)||(20113523-20113823)
chr1 (18-321)||(24449932-24450235)
chr1 (16-288)||(24684478-24684748)
chr1 (19-234)||(7857518-7857731)
chr1 (16-295)||(24658731-24659010)
chr1 (16-207)||(46814467-46814656)
chr1 (11-125)||(5459133-5459247)
chr1 (16-225)||(32864561-32864771)
chr1 (22-134)||(27031846-27031958)
chr1 (37-191)||(9313310-9313463)
chr1 (37-234)||(38544759-38544954)
chr1 (42-191)||(34774779-34774925)
chr1 (28-112)||(17033571-17033655)
chr1 (16-78)||(27102210-27102272)
chr1 (18-78)||(19598655-19598715)
chr1 (174-225)||(10785489-10785540)
chr1 (43-135)||(4651742-4651834)
chr1 (320-402)||(5398595-5398680)
chr1 (177-234)||(50589365-50589422)
chr1 (36-75)||(27905434-27905473)
chr1 (163-225)||(6583337-6583399)
chr1 (28-78)||(15840924-15840974)
chr1 (37-98)||(6583237-6583298)
chr1 (42-78)||(30655579-30655615)
[»] chr7 (31 HSPs)
chr7 (11-321)||(38306037-38306347)
chr7 (8-321)||(47325877-47326190)
chr7 (16-321)||(3419656-3419962)
chr7 (11-286)||(5860283-5860558)
chr7 (19-299)||(10243985-10244260)
chr7 (16-288)||(3866926-3867197)
chr7 (11-321)||(37794777-37795075)
chr7 (16-282)||(25160630-25160896)
chr7 (17-298)||(33434909-33435189)
chr7 (20-186)||(41089752-41089918)
chr7 (16-287)||(34389771-34390043)
chr7 (16-222)||(35745827-35746031)
chr7 (28-234)||(6716748-6716953)
chr7 (16-129)||(6584877-6584990)
chr7 (16-225)||(8745026-8745234)
chr7 (28-225)||(42533264-42533460)
chr7 (60-225)||(44755500-44755663)
chr7 (11-75)||(44353559-44353623)
chr7 (28-224)||(16954527-16954722)
chr7 (28-191)||(1320701-1320863)
chr7 (28-87)||(13311849-13311908)
chr7 (30-120)||(3478329-3478419)
chr7 (28-145)||(24324810-24324927)
chr7 (19-78)||(12480905-12480965)
chr7 (28-144)||(16828948-16829064)
chr7 (43-135)||(38485518-38485610)
chr7 (39-97)||(9428128-9428186)
chr7 (28-225)||(11379139-11379335)
chr7 (40-78)||(9349768-9349806)
chr7 (28-86)||(47457034-47457092)
chr7 (16-76)||(46133277-46133338)
[»] chr8 (22 HSPs)
chr8 (11-299)||(9519297-9519585)
chr8 (11-299)||(34389000-34389288)
chr8 (11-321)||(24995390-24995700)
chr8 (11-297)||(32066290-32066576)
chr8 (11-321)||(37986853-37987164)
chr8 (16-296)||(36630638-36630918)
chr8 (145-321)||(31210319-31210496)
chr8 (18-149)||(31207364-31207494)
chr8 (28-225)||(10248565-10248761)
chr8 (16-245)||(15821379-15821606)
chr8 (11-118)||(16457456-16457562)
chr8 (19-225)||(17657005-17657209)
chr8 (11-120)||(12898269-12898378)
chr8 (11-75)||(20138448-20138512)
chr8 (11-90)||(41893396-41893474)
chr8 (16-135)||(30236128-30236247)
chr8 (16-78)||(15906705-15906767)
chr8 (16-78)||(32945703-32945765)
chr8 (48-78)||(33967345-33967375)
chr8 (48-86)||(40531243-40531281)
chr8 (28-72)||(3679471-3679515)
chr8 (42-78)||(12883497-12883533)
[»] chr2 (30 HSPs)
chr2 (11-299)||(39338860-39339148)
chr2 (11-321)||(10523873-10524187)
chr2 (16-245)||(7874145-7874372)
chr2 (53-311)||(17105197-17105456)
chr2 (20-119)||(387151-387250)
chr2 (16-134)||(14405162-14405279)
chr2 (18-207)||(1269373-1269562)
chr2 (38-227)||(14106546-14106734)
chr2 (19-86)||(13337285-13337352)
chr2 (38-225)||(37770663-37770849)
chr2 (16-78)||(4471942-4472004)
chr2 (18-78)||(22885135-22885195)
chr2 (16-78)||(16960001-16960063)
chr2 (16-78)||(34230220-34230282)
chr2 (16-75)||(7695985-7696044)
chr2 (16-78)||(2062908-2062970)
chr2 (16-78)||(10173578-10173640)
chr2 (16-78)||(15126410-15126472)
chr2 (51-225)||(41086823-41086994)
chr2 (16-78)||(5254275-5254337)
chr2 (259-296)||(7695869-7695906)
chr2 (19-76)||(16952386-16952443)
chr2 (19-76)||(17023051-17023108)
chr2 (19-76)||(17060357-17060414)
chr2 (19-76)||(17079190-17079247)
chr2 (43-136)||(27739936-27740029)
chr2 (37-78)||(33788653-33788694)
chr2 (29-78)||(42048229-42048278)
chr2 (38-98)||(23650384-23650444)
chr2 (28-76)||(37831024-37831072)
[»] chr4 (30 HSPs)
chr4 (18-321)||(30964217-30964520)
chr4 (16-319)||(8254805-8255108)
chr4 (16-319)||(8268223-8268526)
chr4 (11-299)||(4305523-4305811)
chr4 (18-189)||(30167566-30167736)
chr4 (16-225)||(25753045-25753253)
chr4 (18-208)||(53823423-53823612)
chr4 (16-227)||(31050662-31050871)
chr4 (28-210)||(19672989-19673169)
chr4 (28-225)||(22811172-22811367)
chr4 (28-208)||(19815236-19815415)
chr4 (45-191)||(39421042-39421187)
chr4 (16-191)||(2825691-2825864)
chr4 (16-78)||(38929846-38929908)
chr4 (26-78)||(36962626-36962677)
chr4 (22-89)||(38637238-38637305)
chr4 (27-78)||(39041285-39041336)
chr4 (16-112)||(46698784-46698881)
chr4 (28-77)||(2792286-2792335)
chr4 (16-89)||(41117967-41118040)
chr4 (28-75)||(21387216-21387263)
chr4 (16-67)||(28966897-28966948)
chr4 (16-75)||(35800511-35800570)
chr4 (16-78)||(16501750-16501812)
chr4 (48-78)||(17416541-17416571)
chr4 (19-69)||(35341341-35341391)
chr4 (32-78)||(40813797-40813843)
chr4 (49-78)||(37707388-37707417)
chr4 (16-68)||(12296204-12296256)
chr4 (38-98)||(49747526-49747586)
[»] chr5 (18 HSPs)
chr5 (11-321)||(698137-698447)
chr5 (16-321)||(18593019-18593324)
chr5 (16-288)||(34377907-34378179)
chr5 (16-214)||(29087364-29087562)
chr5 (16-225)||(13954234-13954441)
chr5 (37-191)||(7392052-7392205)
chr5 (19-219)||(8297347-8297546)
chr5 (28-225)||(7195251-7195447)
chr5 (37-185)||(33258903-33259050)
chr5 (16-191)||(14302430-14302604)
chr5 (16-67)||(22675324-22675375)
chr5 (38-169)||(25991936-25992066)
chr5 (40-135)||(31721639-31721734)
chr5 (32-78)||(21402853-21402899)
chr5 (16-78)||(27713088-27713150)
chr5 (18-51)||(7162319-7162352)
chr5 (37-78)||(39184208-39184249)
chr5 (19-75)||(26045967-26046023)
[»] chr3 (29 HSPs)
chr3 (16-318)||(20611562-20611864)
chr3 (11-281)||(2392501-2392771)
chr3 (11-321)||(34475749-34476058)
chr3 (18-281)||(2394255-2394518)
chr3 (16-284)||(19176316-19176583)
chr3 (84-321)||(47235492-47235729)
chr3 (11-295)||(45163651-45163941)
chr3 (20-234)||(23328354-23328564)
chr3 (11-89)||(17550965-17551043)
chr3 (28-225)||(25647557-25647753)
chr3 (16-245)||(40023572-40023799)
chr3 (16-136)||(9584053-9584173)
chr3 (20-100)||(43012372-43012452)
chr3 (28-191)||(14193846-14194009)
chr3 (16-191)||(37123289-37123463)
chr3 (16-117)||(45398776-45398877)
chr3 (16-78)||(1652886-1652948)
chr3 (16-78)||(47945725-47945787)
chr3 (37-225)||(14755286-14755471)
chr3 (16-74)||(33143948-33144007)
chr3 (11-66)||(47235729-47235784)
chr3 (11-101)||(31482880-31482970)
chr3 (16-78)||(39021276-39021338)
chr3 (28-76)||(30127283-30127332)
chr3 (28-87)||(5556580-5556639)
chr3 (28-111)||(14879421-14879504)
chr3 (28-78)||(823447-823497)
chr3 (104-214)||(4464024-4464132)
chr3 (29-77)||(31424256-31424304)
[»] scaffold0068 (1 HSPs)
scaffold0068 (16-319)||(35772-36075)
[»] chr6 (14 HSPs)
chr6 (11-285)||(3117304-3117579)
chr6 (19-320)||(16510304-16510597)
chr6 (16-225)||(20701803-20702011)
chr6 (104-227)||(15132611-15132732)
chr6 (19-236)||(32935342-32935558)
chr6 (56-225)||(3880623-3880791)
chr6 (39-78)||(26216042-26216081)
chr6 (31-78)||(34105432-34105479)
chr6 (39-78)||(12794133-12794173)
chr6 (37-96)||(9224042-9224101)
chr6 (28-75)||(13423488-13423535)
chr6 (39-78)||(26534742-26534781)
chr6 (28-73)||(33968625-33968670)
chr6 (28-72)||(32316393-32316437)
[»] scaffold0200 (1 HSPs)
scaffold0200 (16-207)||(19273-19464)
[»] scaffold0050 (1 HSPs)
scaffold0050 (31-225)||(36580-36773)
[»] scaffold0119 (1 HSPs)
scaffold0119 (18-207)||(42140-42329)
[»] scaffold1613 (1 HSPs)
scaffold1613 (37-234)||(1038-1233)
[»] scaffold0063 (1 HSPs)
scaffold0063 (28-225)||(58000-58196)
[»] scaffold0620 (1 HSPs)
scaffold0620 (31-78)||(3849-3896)
[»] scaffold0343 (1 HSPs)
scaffold0343 (16-51)||(5751-5786)


Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Original strand, 5389416 - 5389849
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5389416 cacaaagcccaaaaacaaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 5389515  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5389516 cctcgcccccggtacaccagagaaaaatcaaatcaagtcaaacaaagattgcagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 5389615  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcaccc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5389616 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggcttaacacaacgttgcaagcaccc 5389715  T
Q  311 ttcaaactccgattttgaatggctatagtgcttgctgagggtgcaggaagaggtaatccgaaaaagatgaccatgtttatgaatcccaaaaggtgttctc 410  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5389716 tccaaactccgattttgaatggctatagtgcttgctgagggtgcaggaagaggtaatccgaaaaagatgaccatgtttatgaatcccaaaaggtgttctc 5389815  T
Q  411 gccgccgacacctggttgttcgttgtggcataac 444  Q
    |||||||||||| |||||||||||||||||||||    
T  5389816 gccgccgacaccaggttgttcgttgtggcataac 5389849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 41920538 - 41920234
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||    
T  41920538 cacaaagcccaaaatccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactgtagtaccaaattagcagggcacc 41920439  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |    
T  41920438 cctcgcccc-agtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaaccggcccaccg 41920340  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcaccc 310  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || ||||||    
T  41920339 aaaactagcacacaatatgtaagacgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctcaacacaacgtgacacgcaccc 41920240  T
Q  311 ttcaaa 316  Q
    | ||||    
T  41920239 tccaaa 41920234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 31585755 - 31586063
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  31585755 cacaaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactatagtaccaaattagcagggcacc 31585854  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||      
T  31585855 cctcaccctcagtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaaccggcccacca 31585954  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcaccc 310  Q
    |||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||  || ||||||    
T  31585955 aaaatcagcaaacactatgtaagacgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctcaacataacgtgacacgcaccc 31586054  T
Q  311 ttcaaactc 319  Q
    | |||||||    
T  31586055 tccaaactc 31586063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 30685899 - 30686209
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| ||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  30685899 cacaaagcccaaaagccaacttgagtcaaagaactgactcccgatctcaaatcaaaagtgatcggcccacaagactatagtaccaaattagcagggcacc 30685998  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||  |||||||||||||||| ||||||||||||||||| ||||| || ||||||  ||||||||||||||||||||||||||||||||||| |    
T  30685999 cctcgccccaggtacaccagagaaaaaccaaatcaagtcaaacaaggattgcagttagacctcgactcccgatctcgaagccaaatgaaccggcccaccg 30686098  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcaccc 310  Q
    ||||||| |||||||||||||||| |||||||| || | ||||||||||||||||||||| ||||||||||||||||| ||||||||||  || | ||||    
T  30686099 aaaaccaacacacaatatgtaagacgaaagacaaggtaagcgaagtttaaacaacaaacagatcaaaaggaaaaggctcaacacaacgtgacacgaaccc 30686198  T
Q  311 ttcaaactccg 321  Q
    | |||||||||    
T  30686199 tccaaactccg 30686209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 46692814 - 46693100
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||  |||||||||  ||||||||||| |||||||    
T  46692814 cacaaagcccaaaaaccaacttgagccaaagaactaactcccgatctcgaatcaaaagtgatcggcccaccagactatatcaccaaattagcagggcacc 46692913  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||  |||||||||||||||||||||||||| |||||||| |    
T  46692914 tctcgcccccggtacaccagagaaaaatcaaatcaagtcaaacaaagattgcaactagacctcgactcccgatctcgaagccaaatgaatcggcccaccg 46693013  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaac 297  Q
    ||||| ||||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  46693014 aaaactagcacacaatatgtaagacaaaagacatggcatgtgaagtttgaacaacaaacaaatcaaaaagaaaaggctcaacacaac 46693100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 20113523 - 20113823
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcc 117  Q
    ||||||||||||||| ||| |||||||||| ||| ||||| ||||||||| |||||| |||  ||||||||| |||||||||||| ||||||||||||||    
T  20113523 cccaaaaaccaacttaagttaaagaactgattcccgatcttgaatcaaaaatgatcgtcccagcagactataataccaaattagcagggcacccctcgcc 20113622  T
Q  118 cccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaacca 217  Q
    ||| ||||||| |||||||| |||| ||  || ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||| |    
T  20113623 cccggtacacccgagaaaaaccaaaccatatctaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaacta 20113722  T
Q  218 gcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcacccttcaaac 317  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || | |||||  || |||||||||||||    
T  20113723 gcacacaatatgtaagatgaaagacatggcatgcaaagtttaaacaacaaacaaatcaaaaggaaaagcctcaatataacgtgacacgcacccttcaaac 20113822  T
Q  318 t 318  Q
    |    
T  20113823 t 20113823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 24449932 - 24450235
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcc 117  Q
    ||||||||||||||| || ||||||||||||| | |||||| |||||||||||||||||||  || |||||||||||||| |||| ||||||||||||||    
T  24449932 cccaaaaaccaacttaagacaaagaactgacttccgatctcaaatcaaaagtgatcggcccaccaaactatagtaccaaaatagcagggcacccctcgcc 24450031  T
Q  118 cccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaacca 217  Q
    ||| |||||||||||||||| |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||  ||||||||    
T  24450032 cccggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaacca 24450131  T
Q  218 gcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcacccttcaaac 317  Q
     |||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||||| ||| || |||||| |||  || ||||||  |||||    
T  24450132 acacataatatgtaagacgaaagacatggcgtgcgaagtttaaataacaaacaaatccaaaggacaagactcaacacagcgtgacacgcaccccccaaac 24450231  T
Q  318 tccg 321  Q
    ||||    
T  24450232 tccg 24450235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 24684478 - 24684748
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||||||||||||||| ||||||||||||||||  | |||||||||| |||||||||||||||  |||||| ||| | ||||||||  ||||||||||||    
T  24684478 agcccaaaaaccaactagagtcaaagaactgacatccgatctcgaattaaaagtgatcggcccaccagactttagaatcaaattagtagggcacccctcg 24684577  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||  || |||| ||||||    
T  24684578 cccccggtacaccagag-aaaaccaaatcaagtcaaacaaagattacagctagaccccgactcccgatctcgaagccaaatgaattgg-ccaccgaaaac 24684675  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggct 288  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  24684676 cagcacacaatatgtaagacgaaagacatggcatgcgaagtttaaccaacagacaaatcacaaggaaaaggct 24684748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 7857731 - 7857518
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgccc 118  Q
    |||||||||||||| ||  |||||  ||||||| ||||||||||||||||||||||||||  |||||| ||| ||||||| ||| |||||||||||||||    
T  7857731 ccaaaaaccaacttcagcaaaagagttgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcagcagggcacccctcgccc 7857632  T
Q  119 ccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccag 218  Q
    |||||||||||||||| || || ||||||||||||| | |||| | |||||| |  ||||||||||||||||| |||  || |||||||||| |||||||    
T  7857631 ccagtacaccagagaacaa-catatcaagtcaaacata-attgcaactagacaccaactcccgatctcgaagcaaaaataatcggcccactggaaaccag 7857534  T
Q  219 cacacaatatgtaaga 234  Q
    ||||||||||||||||    
T  7857533 cacacaatatgtaaga 7857518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 24659010 - 24658731
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||||| || |||||| |||||||| |||||||||||||||||||| |||||  |||||| ||| ||||||| ||| |||||||||| |    
T  24659010 agcccaaaaaccaacttcagccaaagagctgactcccgatctcgaatcaaaagtgattggcccaccagactttagaaccaaatcagcagggcaccccttg 24658911  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    |||||  |||||||||| || | || |||||||||||| | ||||| |||||||| |  ||||||||||| ||||| |||  ||||||||||| | |  |    
T  24658910 cccccgatacaccagag-aacaccatatcaagtcaaac-atgattgcagctagacaccaactcccgatcttgaagcaaaaataaccggcccaccggactc 24658813  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcga--agtttaaacaacaaacaaatcaaaaggaaaaggctgaacaca 295  Q
    |||||||||| |||||||| || |||||||  ||||||   ||  ||| ||||||| | ||| |||||||||||| ||||||    
T  24658812 cagcacacaaaatgtaagacgatagacatgatatgcgattggtccaaaaaacaaactagtcacaaggaaaaggcttaacaca 24658731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 46814467 - 46814656
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||| ||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||  |||||| ||| ||||||| ||| |||||||||| |    
T  46814467 agccaaaaaaccaacttgagccaaaaagctgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcagcagggcaccccttg 46814566  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggccca 207  Q
    ||||| ||||||||||| || | || |||||||||||| | ||||| | |||||| |  |||| |||||||||| | |||  ||||||||||    
T  46814567 cccccggtacaccagag-aacaccatatcaagtcaaac-aggattgcaactagacaccaactctcgatctcgaatcaaaaataaccggccca 46814656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 5459247 - 5459133
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||||||||| |||||||| ||||| || ||||||| ||||||||||||||||||||||||||  |||||||||| ||||||||||| ||| |||    
T  5459247 cacaaagcccaaaaatcaacttgaatcaaataattgactcccgatctcgaatcaaaagtgatcggcccaccagactatagcaccaaattagcagggtacc 5459148  T
Q  111 cctcgcccccagtac 125  Q
    |||||||||| ||||    
T  5459147 cctcgcccccggtac 5459133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 32864561 - 32864771
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||| | ||||||||||||||||| |||| | |||||||||| ||||||||| |||||  ||| || ||| |||||||  |  |||||||||||     
T  32864561 agcccaaaaccaaacttgagtcaaagaaccgacttccgatctcgaattaaaagtgattggcccaccagcctttaggaccaaatcggaagggcacccctca 32864660  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggccca-ctgaaaa 214  Q
    ||| ||||| | |||| ||| | ||||| ||| ||||  |||||||||||||||| | |||||| ||| ||||||| |||  |||||||||| | |||||    
T  32864661 ccctcagtagatcagataaacaccaaataaagccaaaacaagattgtagctagacaccgactcctgatttcgaagcaaaagtaaccggcccaccggaaaa 32864760  T
Q  215 ccagcacacaa 225  Q
    | |||||||||    
T  32864761 ctagcacacaa 32864771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 27031846 - 27031958
Alignment:
Q  22 aaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgccccca 121  Q
    |||||||||||||| |||||| |||||||  ||||||||||||||||||||||||||   ||||| ||| ||||||| ||| ||||||||||  |||||     
T  27031846 aaaaccaacttgagccaaagagctgactctcgatctcgaatcaaaagtgatcggcccactagactttagaaccaaatcagcagggcacccctttcccccg 27031945  T
Q  122 gtacaccagagaa 134  Q
    |||||||||||||    
T  27031946 gtacaccagagaa 27031958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 9313310 - 9313463
Alignment:
Q  37 caaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaa 136  Q
    ||||||||||||||| ||||||||||||||||||||| ||||   ||||| ||| ||||||| ||  ||||||||||| | |||  ||||| |||||||     
T  9313310 caaagaactgactcccgatctcgaatcaaaagtgatcagcccactagactttaggaccaaatcagaagggcacccctcacgcccgatacacgagagaaac 9313409  T
Q  137 atcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagc 191  Q
    | ||||||| | |||||||| |||| |||||||| |  |||||||||||||||||    
T  9313410 accaaatcacggcaaacaaa-attgcagctagacaccaactcccgatctcgaagc 9313463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 37 - 234
Target Start/End: Original strand, 38544759 - 38544954
Alignment:
Q  37 caaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaa 136  Q
    ||||||||||||||| |||||||||||||||| |||||||||  ||||||  |  ||||||| ||  ||| |||||||   |||||| |||||||||||     
T  38544759 caaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagacttcatgaccaaatcagaaggg-acccctcattcccagtccaccagagaaac 38544857  T
Q  137 atc-aaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaatatgtaaga 234  Q
    | | ||||||| |||||| ||||||| |||||||| |  |||||| |||||||||| |||  || |||||||||  || ||||||||||||||||||||    
T  38544858 accaaaatcaa-tcaaac-aagattgcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacacaatatgtaaga 38544954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 34774925 - 34774779
Alignment:
Q  42 aactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaaatcaa 141  Q
    |||||||||| |||||||| |||||||||||||| ||  |||||  ||| ||||||| ||  ||||||| ||| ||||| ||| || ||||||| |||||    
T  34774925 aactgactcccgatctcga-tcaaaagtgatcggtccaccagacgttaggaccaaatcagaagggcaccactcaccccc-gtatactagagaaacatcaa 34774828  T
Q  142 atcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagc 191  Q
    |||||| ||||| |||||||||| ||||| | |||||||| |||||||||    
T  34774827 atcaagccaaac-aagattgtagttagacaccgactcccgttctcgaagc 34774779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 17033655 - 17033571
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccc 112  Q
    |||||||  ||||||||||||||| |||||||| |||||||||||||||||  |||||||||| ||||||| ||  |||||||||    
T  17033655 aacttgaaccaaagaactgactcccgatctcgattcaaaagtgatcggcccaccagactataggaccaaatcagaagggcacccc 17033571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 27102272 - 27102210
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | |||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  27102272 agcccaaaaccaaacttgatccaaagaactgactcccgatctcgaatcaaaagtgatcggccc 27102210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 19598715 - 19598655
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||| | |||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  19598715 cccaaaatcaaacttgagtcaaagaactgactctcgatctcgaatcaaaagcgatcggccc 19598655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 10785489 - 10785540
Alignment:
Q  174 gactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    |||||||||||||||||| |||| ||||||||||| | ||||||||||||||    
T  10785489 gactcccgatctcgaagcaaaattaaccggcccaccggaaaccagcacacaa 10785540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 4651834 - 4651742
Alignment:
Q  43 actgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaatt-agctgggcacccctcgcccccagtacaccagagaaa 135  Q
    ||||||||| ||||||||||||||||||||||||||  |||||| | | | |||||| ||  ||||||||||  ||||| ||||||||||||||    
T  4651834 actgactcccgatctcgaatcaaaagtgatcggccccccagact-tcggaacaaattcagaagggcaccccttacccccggtacaccagagaaa 4651742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 402
Target Start/End: Original strand, 5398595 - 5398680
Alignment:
Q  320 cgattttgaatggctatagtgcttgctgagggtgcaggaagaggtaatc----cgaaaaagatga---ccatgtttatgaatcccaaaag 402  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||    ||||||||||||   ||||||||| ||||| ||||||    
T  5398595 cgattttgaatggctatagtgct----gagggtgcaggaagaggtaatcaactcgaaaaagatgatggccatgtttacgaatctcaaaag 5398680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 50589365 - 50589422
Alignment:
Q  177 tcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaatatgtaaga 234  Q
    ||||||||||||||| |||| |||||||||||   || ||||||||||||||||||||    
T  50589365 tcccgatctcgaagcaaaattaaccggcccaccagaatccagcacacaatatgtaaga 50589422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 27905473 - 27905434
Alignment:
Q  36 tcaaagaactgactcctgatctcgaatcaaaagtgatcgg 75  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  27905473 tcaaagaactaacttctgatctcgaatcaaaagtgatcgg 27905434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 6583337 - 6583399
Alignment:
Q  163 agctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    |||||||| | |||||||||||||||||| |||  ||||||||||| || ||||| |||||||    
T  6583337 agctagacaccgactcccgatctcgaagcaaaagtaaccggcccaccgacaaccaacacacaa 6583399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 15840924 - 15840974
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||| ||||  |||||||||| ||||||||||||||||||||| ||||    
T  15840924 aacttgaatcaagaaactgactcccgatctcgaatcaaaagtgatcagccc 15840974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 6583237 - 6583298
Alignment:
Q  37 caaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaat 98  Q
    ||||||| ||||| | ||||||||||||||||||||||| ||  |||||| ||| |||||||    
T  6583237 caaagaattgactgccgatctcgaatcaaaagtgatcggtccaccagactttaggaccaaat 6583298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 30655615 - 30655579
Alignment:
Q  42 aactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    |||||||||| |||||||||||||||| |||||||||    
T  30655615 aactgactcccgatctcgaatcaaaagcgatcggccc 30655579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 38306347 - 38306037
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  38306347 cacaaagcccaaaaaccaacttgagtcaaagaactgactcccaatctcgaatcaaaagtgatcggcccaccagactatagtaccaaattagcagggcacc 38306248  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| |    
T  38306247 cctcgccccctgtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgttctcgaagccaaatgaaccggcccaccg 38306148  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcaccc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38306147 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctcaacacaacgttgcaagcaccc 38306048  T
Q  311 ttcaaactccg 321  Q
    | |||||||||    
T  38306047 tccaaactccg 38306037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 47325877 - 47326190
Alignment:
Q  8 cagcacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggc 107  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||||  ||||||||||||||||||||||  |||    
T  47325877 cagcacaaagcccaaaaaccaacttgagtcaaagagctgactcccgatctcaaatcaaaagcgatcggcccaccagactatagtaccaaattagcaaggc 47325976  T
Q  108 acccctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggccca 207  Q
    ||||||||||||| |||||||||||||||| |||||||||| ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  47325977 acccctcgcccccggtacaccagagaaaaaccaaatcaagttaaacaaagattgctgctagaccccgactcccgatctcgaagccaaatgaaccggccca 47326076  T
Q  208 ctgaaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagca 307  Q
      ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||  || |||    
T  47326077 tcgaaaaccagcacacaatatgtaagaagaaagacatggcatgcgaagtttgaacaacaaacaaatcaaaaggaaaaggctcaacacaacgtgacacgca 47326176  T
Q  308 cccttcaaactccg 321  Q
    |||| |||||||||    
T  47326177 ccctccaaactccg 47326190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 3419656 - 3419962
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||  || ||| ||||||||||||| | ||||||||||||    
T  3419656 agcccaaaaaccaacttgagtcaaagagctgactcccgatctcgaatcaaaagtgatcagcccaccacactttagtaccaaattaacagggcacccctcg 3419755  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | | ||||||    
T  3419756 cccccggtataccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaaccggctcgccgaaaac 3419855  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacac-aacgttgcaagcacccttca 314  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| |||||  || ||||||| ||    
T  3419856 cagcacacaatatgtaagacgaaagacatggcatgtgaagtttaaacaacaaacaaatcaaaaggaaagggctcaacacaaacgtgacacgcaccctcca 3419955  T
Q  315 aactccg 321  Q
    |||||||    
T  3419956 aactccg 3419962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 5860283 - 5860558
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||||||||||||||||| ||||||||| ||||||| |||||||||||||||| ||| |||||  | |||||||||||||||||||| |||||||    
T  5860283 cacaaagcccaaaaaccaacttgcgtcaaagaattgactcccgatctcgaatcaaaagcgataggcccaccggactatagtaccaaattagcagggcacc 5860382  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||| |||||  ||||||||| |||||  || ||||||||||||| || ||||||  ||||||||||||||||||||||||||||||||||  |    
T  5860383 cctcgcccccggtacagtagagaaaaaccaaattcagccaaacaaagattgcagatagacctcgactcccgatctcgaagccaaatgaaccggcccatcg 5860482  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaagg 286  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  5860483 aaaaccagcacacaatatgtaagacgaaagacatggcgagcgaagtttaaacaacaaacaaatcaaaaggagaagg 5860558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 10244260 - 10243985
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgccc 118  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| ||||| ||||||||||| ||||||||||| |||    
T  10244260 ccaaaaactaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagattatagcaccaaattagcagggcacccctctccc 10244161  T
Q  119 ccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccag 218  Q
    || |||||||||||||||| |||||| | |||||||||||||| | ||||| || |||||||||||||||||||||||||||| ||| || |||||||||    
T  10244160 ccggtacaccagagaaaaaccaaatcta-tcaaacaaagattgcaactagatcccgactcccgatctcgaagccaaatgaaccagccaaccgaaaaccag 10244062  T
Q  219 cacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgt 299  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||||||||   |||| ||||||||| || |||||||    
T  10244061 cacacaatatgtaagacgaaa-acatggcatgcgaagtttgaacaacaaacaa---aaaaagaaaaggctcaaaacaacgt 10243985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 3867197 - 3866926
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||  || | | ||||||||||||||| || ||||| |||    
T  3867197 agcccaaaaaccaacttgagtcaaagaactgactcccggtctcgaatcaaaagtgatcagcccaccatattttagtaccaaattagcaggccacccttcg 3867098  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||| | |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||  || || ||||| | ||||    
T  3867097 ccctcggtacaccagagaaaaaccatatcaagtcaaacaaagattgtagctagaccccgactctcgatctcgaagcaaaagtaatcgacccaccg-aaac 3866999  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggct 288  Q
    ||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||    
T  3866998 caggacacaatatgtaagacgaaagacgtggcatgtgaagtttaaacaacaaataaatcaaaaggaaaaggct 3866926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 37795075 - 37794777
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||  || |||||| |||||||||||| |||||||    
T  37795075 cacaaagcccaaaaaccaacttgactcaaagaactgactcccgatctcgaatcaaaactgaacggcccaccatactatattaccaaattagcagggcacc 37794976  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||| ||||||||           ||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||| |    
T  37794975 cctcgcccccggtacacca-----------aatcaagtcaaacaaagattgcagctagaccccaactcccgatctcgaagccaaatgaaccggcccaccg 37794887  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcaccc 310  Q
    |||||||||||||||||||||| |  |||| |  |||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||  ||  |||||    
T  37794886 aaaaccagcacacaatatgtaaaacaaaagtc-cggcatgcgaagtttgaacaacaaacaaatcaaaaggaaaatgctcaacacaatgtgacacacaccc 37794788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 25160896 - 25160630
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||||| | |  ||||  ||||| | ||||||||||||||||| ||||| ||  |||||||||| ||||||||||| ||||||||||||    
T  25160896 agcccaaaaaccaacttaatttcaagatttgacttccgatctcgaatcaaaagtaatcggtccaccagactatagaaccaaattagcagggcacccctcg 25160797  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||| | |||||||||||||||| |||| ||||||||||||| || | | |||||||| ||||||||||| | |||||||||||| |  ||||| ||||||    
T  25160796 ccctcggtacaccagagaaaaaccaaaccaagtcaaacaaaaatagcaactagaccccgactcccgatcccaaagccaaatgaatcatcccaccgaaaac 25160697  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaa 282  Q
    ||| |||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||    
T  25160696 cagtacacaatatgtaagacaaaagacatggcatgcgtagtttaaacaacaaacaaatcaaaaggaa 25160630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 33435189 - 33434909
Alignment:
Q  17 gcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgc 116  Q
    ||||| |||| |||||||| ||||||||||||||| |||||||||||||||||||||| | |  |||||| ||||||||||||| | |||||||||||||    
T  33435189 gcccacaaacgaacttgagacaaagaactgactcccgatctcgaatcaaaagtgatcgtctcaccagactttagtaccaaattaacagggcacccctcgc 33435090  T
Q  117 ccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaacc 216  Q
    |||| ||||||||||| |||| |||||||||  |||||||||||  | ||||||||||||| ||||||||||||| |||  || |||||||| | |||||    
T  33435089 ccccggtacaccagag-aaaaccaaatcaagctaaacaaagattacaactagacccggactaccgatctcgaagcaaaagtaatcggcccaccggaaacc 33434991  T
Q  217 agcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacg 298  Q
    | |||||||||||||| | ||| |||||||||||| ||||||||||||| |||  ||| |||||||||||||  ||||||||    
T  33434990 aacacacaatatgtaatacgaatgacatggcatgcaaagtttaaacaaccaacctatcgaaaggaaaaggctcgacacaacg 33434909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 41089752 - 41089918
Alignment:
Q  20 caaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccc 119  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||| ||  |||||| ||||||||||||||| | ||||||||||||||    
T  41089752 caaaaaccaacttgagtcaaagagctgactcccaatctcgaatcaaaagtgatcggtccaccagactttagtaccaaattagcagagcacccctcgcccc 41089851  T
Q  120 cagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctc 186  Q
    |  ||||||||||||||| ||||||||||||||||||||||||||||||||||  |||| |||||||    
T  41089852 cgatacaccagagaaaaaccaaatcaagtcaaacaaagattgtagctagaccccaactctcgatctc 41089918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 34390043 - 34389771
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||||| || |||||| |||||||| ||||||||||||||||||||||||||  |||||| ||  ||||||| ||| |||||| ||||     
T  34390043 agcccaaaaaccaacttaagccaaagagctgactcccgatctcgaatcaaaagtgatcggcccaccagactttaaaaccaaatcagcagggcactcctca 34389944  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||||||||||||||||| |  || |||||||||||  | ||||| | |||||| |  ||| | ||||||||||| |||  ||| ||||||    | ||    
T  34389943 cccccagtacaccagagaacac-catatcaagtcaaaacatgattgcaactagacaccaacttctgatctcgaagcaaaaataactggcccatcagacac 34389845  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcga--agtttaaacaacaaacaaatcaaaaggaaaaggc 287  Q
    |||||||||||||||| || || |||||||  ||||||   ||  ||||||||| ||||| |||||||||||||    
T  34389844 cagcacacaatatgtacgacgatagacatgatatgcgattggtgcaaacaacaagcaaatgaaaaggaaaaggc 34389771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 35745827 - 35746031
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||||||||||||||||||| ||||||  ||||| | ||||||||||||||||||||| |||| ||||||| ||| || |||||||  ||||||||||||    
T  35745827 agcccaaaaaccaacttgagccaaagagatgacttccgatctcgaatcaaaagtgatcagcccatcagactttagaacaaaattagtagggcacccctcg 35745926  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| ||||| ||||| || | || |||||||||||| |||||||  ||||| | |  ||| ||||||||||||| |||  |||||| |||| ||||||    
T  35745927 cccccggtacatcagag-aacaccatatcaagtcaaac-aagattgctgctagtcaccaacttccgatctcgaagcaaaagtaaccggtccaccgaaaac 35746024  T
Q  216 cagcaca 222  Q
    || ||||    
T  35746025 caacaca 35746031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 234
Target Start/End: Original strand, 6716748 - 6716953
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||   |||||| ||  |  |||| ||  ||||||||||| | | | ||||||    
T  6716748 aacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcggccaaccagactttatgattaaatcagaagggcacccctcactctcggtacac 6716847  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaata 227  Q
    |||||||| ||||||||||| |||| || ||||| |||||||| | ||||||||||||| |||  |||  ||| ||||||| |||||||||||| ||| |    
T  6716848 cagagaaacatcaaatcaagccaaataa-gattgcagctagacaccgactcccgatctcaaagtaaaagtaactggcccaccgaaaaccagcacgcaaaa 6716946  T
Q  228 tgtaaga 234  Q
     ||||||    
T  6716947 agtaaga 6716953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 6584990 - 6584877
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||||| || |||||| |||||||| ||||||||||||||||||||||||||  |||||| ||| ||||||| ||| ||||||||||||    
T  6584990 agcccaaaaaccaacttaagccaaagagctgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcagcagggcacccctcg 6584891  T
Q  116 cccccagtacacca 129  Q
    || || ||||||||    
T  6584890 cctccggtacacca 6584877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 8745234 - 8745026
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||| | |||||||  ||| ||||||| ||| ||||||||||||||||||||||||||  |||| | ||| ||||||| ||  || ||||||||     
T  8745234 agcccaaaaccaaacttgatccaacgaactgaatcccgatctcgaatcaaaagtgatcggcccaccagaatttaggaccaaatcagaaggccacccctca 8745135  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||| | || ||||||||||| | || ||||   ||||| || |||| |||||||| | | || ||||||||||||| |||  ||||||||||| ||||||    
T  8745134 ccctcggtgcaccagagaaacaccagatcacaccaaac-aacattgcagctagacaccgccttccgatctcgaagcaaaagtaaccggcccaccgaaaac 8745036  T
Q  216 cagcacacaa 225  Q
    ||||||||||    
T  8745035 cagcacacaa 8745026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 42533264 - 42533460
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    ||||| || ||||| | ||||||| ||||||||||||||||||||| ||||  |||||| ||| ||||||| ||  ||||||||||| |||||  | |||    
T  42533264 aacttaagccaaaggattgactcccgatctcgaatcaaaagtgatcagcccaccagactttaggaccaaatcaggagggcacccctcacccccgatgcac 42533363  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    |||||||| | || |||  | ||||  |||| || |||| ||| | |||||||||||||||||| |||  ||||||||||  | | ||||||||||||    
T  42533364 cagagaaacaccacatcgcgccaaa-taagaatgcagctggacacagactcccgatctcgaagcaaaagtaaccggcccatcggagaccagcacacaa 42533460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 44755663 - 44755500
Alignment:
Q  60 aatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagat 159  Q
    |||||||||||||||||||  |||||| ||| ||||||| ||  |||||||||||  || | |||||||||||||| | ||||||| |||||||||| ||    
T  44755663 aatcaaaagtgatcggcccaccagactttaggaccaaatcagaagggcacccctc-accacggtacaccagagaaacaccaaatcacgtcaaacaaa-at 44755566  T
Q  160 tgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
     | |||||||| | ||||||||| ||| |||| |||| ||  ||||||| |  |||||||||||||    
T  44755565 agcagctagacaccgactcccgacctcaaagcaaaattaatgggcccaccgctaaccagcacacaa 44755500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 44353559 - 44353623
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcgg 75  Q
    |||| ||||||||||||||| | |||||||||||||||||| |||||| ||||||||||||||||    
T  44353559 cacaaagcccaaaaaccaacataagtcaaagaactgactcccgatctcaaatcaaaagtgatcgg 44353623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 16954722 - 16954527
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    ||||||||||||||||||||||   ||||||||| ||||||||||||| |   |||||| ||| ||||||| ||  ||||||||||| || |   |||||    
T  16954722 aacttgagtcaaagaactgactttcgatctcgaaacaaaagtgatcggtcaaccagactttaggaccaaatcagaagggcacccctcacctctgatacac 16954623  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacaca 224  Q
    |||||||| | ||||||  | | ||| ||||||| |||||||| |  |||| |||||| ||||| |||  || |||||||  | |||||||||||||    
T  16954622 cagagaaagaccaaatcgcg-ccaaccaagattgcagctagacaccaactctcgatctggaagcaaaagtaatcggcccatcggaaaccagcacaca 16954527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 1320863 - 1320701
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    |||||||| ||||||||||||| | ||| | ||||||||||||||||||||  |||||| ||  ||||||| |   ||||||||||| |||||  ||||     
T  1320863 aacttgagccaaagaactgacttccgattttgaatcaaaagtgatcggcccaccagactttatgaccaaatcaaaagggcacccctcacccccgatacat 1320764  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagc 191  Q
    |||||||| | |||||   | |||||||| |||  |||||||| |  |||||||||||||||||    
T  1320763 cagagaaacaccaaattgcgccaaacaaa-attacagctagacaccaactcccgatctcgaagc 1320701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 13311908 - 13311849
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagacta 87  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  13311908 aacttgaaccaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagacta 13311849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 3478419 - 3478329
Alignment:
Q  30 cttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgccccc 120  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||||  || ||| ||| ||||||  ||  ||||||||||| |||||    
T  3478419 cttgagccaaagaactaactcccgatctcgaatcaaaagtgatcggcccaccaaactttaggaccaaaacagaagggcacccctcaccccc 3478329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 24324810 - 24324927
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    |||||||| ||||||| ||||||| ||||||||||||||| ||||||||||  || ||| ||  ||||||| ||  ||||||||||   |||| ||||||    
T  24324810 aacttgagccaaagaattgactcccgatctcgaatcaaaattgatcggcccaccaaactttaagaccaaatcagaagggcacccctaaaccccggtacac 24324909  T
Q  128 cagagaaaaatcaaatca 145  Q
    || ||||| | |||||||    
T  24324910 caaagaaacaccaaatca 24324927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 12480965 - 12480905
Alignment:
Q  19 ccaaaaaccaa-cttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||||| |||||  ||||||||||||||| |||||||||||||||| |||||||||    
T  12480965 ccaaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatcggccc 12480905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 16828948 - 16829064
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    ||||||||||||||||||||||   ||||||||| ||||||||||| |||   |||||| ||| ||||||| ||  ||||||||||| ||||   |||||    
T  16828948 aacttgagtcaaagaactgactttcgatctcgaaacaaaagtgatcagccaaccagactttaggaccaaatcagaagggcacccctcacccctgatacac 16829047  T
Q  128 cagagaaaaatcaaatc 144  Q
     ||||||| | ||||||    
T  16829048 tagagaaacaccaaatc 16829064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 38485610 - 38485518
Alignment:
Q  43 actgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaa 135  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||  || || || | ||  ||||||||||  |||||||| |||||||||||    
T  38485610 actgactcccgatctcgaatcaaaagtgatcggcccaccagacttcagaacaaattcagaagggcaccccttacccccagtccaccagagaaa 38485518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 9428128 - 9428186
Alignment:
Q  39 aagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaa 97  Q
    ||||||||||| |||||||||||||||||||||||||| |  ||||||| || ||||||    
T  9428128 aagaactgacttctgatctcgaatcaaaagtgatcggctcaccagactacaggaccaaa 9428186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 11379139 - 11379335
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    |||||||  ||||| ||||||||| |||||||||||||||| ||||||| |  ||||||| |  ||||||||||  |||||||||   ||| | || |||    
T  11379139 aacttgaaccaaagtactgactcccgatctcgaatcaaaagcgatcggctcaccagactacatgaccaaattagaagggcaccccaaaccctcggtccac 11379238  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    |||||||| | |  |   || ||||| |||||||||||||||| |  ||||||||||| ||| | |||  ||||| ||||||  || |||||||||||    
T  11379239 cagagaaacaccgtagtcagccaaac-aagattgtagctagacaccaactcccgatcttgaatcaaaaataaccgacccactagaatccagcacacaa 11379335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 9349806 - 9349768
Alignment:
Q  40 agaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  9349806 agaattgactcccgatctcgaatcaaaagtgatcggccc 9349768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 47457034 - 47457092
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagact 86  Q
    |||||||| |||||||||||||||  ||||| ||||||||| |||||| || |||||||    
T  47457034 aacttgagccaaagaactgactcccaatctcaaatcaaaagcgatcggtccatcagact 47457092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 46133277 - 46133338
Alignment:
Q  16 agcccaaaaaccaa-cttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggc 76  Q
    |||||||||||||| |||||  || |||||||||||| |||||| ||||||||| |||||||    
T  46133277 agcccaaaaaccaaacttgaaccagagaactgactcccgatctcaaatcaaaagcgatcggc 46133338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 9519585 - 9519297
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||   ||||||||||||||||||||| |||||||    
T  9519585 cacaaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaactgatcggcccactagactatagtaccaaattagcagggcacc 9519486  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  9519485 cctcacccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaaccggcctactg 9519386  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgt 299  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  9519385 aaaaccagcacacaatatgtaagacgaaagaaatggcatgcgaagtttaaacaacaaacaaataaaaaggaaaaggctcaacacaacgt 9519297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 34389000 - 34389288
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  34389000 cacaaagcccaaaaaccaacttgagtcaaagaactgactcttgatctcgaatcaaaagtgatcggcccaccagactatagtaccaaattagcagggcacc 34389099  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| |  |    
T  34389100 cctcgcccctggtacaccagagaaaaaccaaatcaagtcaaacaaaaattgcagctagaccccgactcccgatctcgaagccaaatgaaccggcctatcg 34389199  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgt 299  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34389200 aaaaccagcacacaatatgtaagacgaaagacatggcatgtgaagtttaaacaacaaacaaatcaaaaggaaaaggctcaacacaacgt 34389288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 24995390 - 24995700
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||  | ||||    
T  24995390 cacaaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactatagtaccaaattagcaagacacc 24995489  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |    
T  24995490 cctcgcccccagtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaaccggcccaccg 24995589  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcaccc 310  Q
    |||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||| ||||||||||||||| ||| ||||||| ||  ||| ||||     
T  24995590 aaaaccagcacacaatatgtaagacgaaaaacatagcatacgaagtttaaacaacaaataaatcaaaaggaaaatgctcaacacaatgtgacaaccaccg 24995689  T
Q  311 ttcaaactccg 321  Q
    | |||||||||    
T  24995690 tccaaactccg 24995700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 32066290 - 32066576
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||||||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  32066290 cacaaagcccaaaaaccaactggagtcaaagagctgactcccgatttcgaatcaaaagtgatcggcccaccagactatagcaccaaattagcagggcacc 32066389  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||||| | |||||||| || |||||||||| ||||||||||||||||||||| |    
T  32066390 cctcgcccccggtacactagagaaaaaccaaatcaagtcaaacaaagattgcaactagaccccgaatcccgatctcaaagccaaatgaaccggcccaccg 32066489  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaac 297  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  32066490 aaaaccagcacacaatatgtaagacgaaagacatggcatgcgaagtttgaacaacaaacaaatcaaaaagaaaaggctcaacacaac 32066576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 37986853 - 37987164
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||  |||||||||  ||||||||||| |||||||    
T  37986853 cacaaagcacaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaaatgattggcccaccagactataacaccaaattagcagggcacc 37986952  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||| |||||||||||||||| |||||||||||||| ||||| || | |||||||| |||| |||||||||||||||||||||||||||||| |    
T  37986953 cctcgcccccggtacaccagagaaaaaccaaatcaagtcaaataaagaatgcaactagaccccgactaccgatctcgaagccaaatgaaccggcccaccg 37987052  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggct-gaacacaacgttgcaagcacc 309  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||  ||||||||||  || |||||    
T  37987053 aaaaccagcacacaatatgtaagacgaaagacatggcatgcgaagtttgaacaacaaacaaatcaaaaagaaaaggctcaaacacaacgtgacacgcacc 37987152  T
Q  310 cttcaaactccg 321  Q
    || | |||||||    
T  37987153 ctcctaactccg 37987164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 36630918 - 36630638
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||| |||| |||||||||||||||| || |||||||||| |||||||||||||||  |||||| ||| ||||||||||| ||||||||||||    
T  36630918 agcccaaaaacaaactagagtcaaagaactgacacccgatctcgaattaaaagtgatcggcccaccagactttagaaccaaattagcagggcacccctcg 36630819  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||  | |||||||||||||||||||||||||||||| || ||||||    
T  36630818 cccccggtacaccaaagaaaaaccaaatcaagtcaaacaaagattgcagctagacctcgtctcccgatctcgaagccaaatgaaccggcctaccgaaaac 36630719  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaa 296  Q
    || |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| | |||||||    
T  36630718 caacacacaatatgtaagacgaaagacatggcatgcgaagtttaaccaacaaacaaatcacaaggaaaaggttcaacacaa 36630638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 145 - 321
Target Start/End: Original strand, 31210319 - 31210496
Alignment:
Q  145 aagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa-tatgtaagatgaaagaca 243  Q
    ||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||    
T  31210319 aagtcaaacaaagattgcagctagaccctgactcccgatcttgaagccaaatgaaccggcccaccgaaaaccagcgcacaaatatgtaagacgaaagaca 31210418  T
Q  244 tggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcacccttcaaactccg 321  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||  || ||||||| | |||||||    
T  31210419 tggcatgcgaagtttgaacaacaaacaaatcaaaaggaaaaggctcaacacaacgtgacacgcaccctccgaactccg 31210496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 31207364 - 31207494
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcc 117  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||| ||||| ||||||||    
T  31207364 cccaaaatccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactatagtaccaaattagcagggca-ccctcgcc 31207462  T
Q  118 cccagtacaccagagaaaaatcaaatcaagtc 149  Q
    ||  |||||||||||||||| |||||||||||    
T  31207463 cctggtacaccagagaaaaaccaaatcaagtc 31207494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 10248565 - 10248761
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||| ||  || | | ||| || |||||||  || |||||||| ||||| ||||||    
T  10248565 aacttgagccaaagaactgactcccgatcttgaatcaaaagtgatcggtccaccaaattttaggacaaaattagaaggacacccctcacccccggtacac 10248664  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    |||||||| | ||||||||| |||||||| |||| |||||||| | |||||||||||||||||| |||  ||| ||||||| | |||||| |||||||    
T  10248665 cagagaaacaccaaatcaagccaaacaaa-attgcagctagacaccgactcccgatctcgaagcaaaagtaactggcccaccggaaaccaccacacaa 10248761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 15821379 - 15821606
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||||| ||||  |||||| ||| ||||||| ||| ||||||||||||    
T  15821379 agcccaaaaaccaacataagtcaaagagctgactcccgatctcgaatcaaaagtgatcagcccaccagactttagaaccaaatcagcagggcacccctcg 15821478  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||| | ||||||||||||| |  || |||||| ||||||  |||||||||||| | |  ||| |||||||| |||  |||  || ||||||||   | ||    
T  15821479 ccctcggtacaccagagaacac-catatcaagccaaacag-gattgtagctaggcaccaacttccgatctcaaagaaaaaataatcggcccaccagatac 15821576  T
Q  216 cagcacacaatatgtaagatgaaagacatg 245  Q
    || |||||||||||||||| || |||||||    
T  15821577 caacacacaatatgtaagacgatagacatg 15821606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 16457456 - 16457562
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  || ||||||||| ||||||||| || ||||    
T  16457456 cacaaagcctaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcgg-ccaccaaactatagtatcaaattagcaggacacc 16457554  T
Q  111 cctcgccc 118  Q
    ||||||||    
T  16457555 cctcgccc 16457562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 17657005 - 17657209
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgccc 118  Q
    |||||| | |||||||| ||||||||||||||| |||||||||||||||||||||| |||  || ||| |||  |||| ||||  |||||||||||   |    
T  17657005 ccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcgacccaccatactttaggtccaacttagaagggcacccctc-atc 17657103  T
Q  119 ccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccag 218  Q
    || ||||| |||||||| | ||||||| | ||||  |||||||||||||| | | |||||||||||||||||| |||| ||||||||||  | ||||||     
T  17657104 ccggtacatcagagaaacaccaaatcacgccaaa-taagattgtagctagccaccgactcccgatctcgaagcaaaattaaccggcccatcggaaaccaa 17657202  T
Q  219 cacacaa 225  Q
    |||||||    
T  17657203 cacacaa 17657209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 12898269 - 12898378
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| ||||| ||||||||||||||| | | |||||||||| |||||||||||||||||||||||  |  ||||||||| ||||||||||   |||||||    
T  12898269 cacaaagccccaaaaccaacttgagttagataactgactccggatctcgaatcaaaagtgatcgggtcaccagactatattaccaaattaatagggcacc 12898368  T
Q  111 cctcgccccc 120  Q
    ||||||||||    
T  12898369 cctcgccccc 12898378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 20138512 - 20138448
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcgg 75  Q
    |||| ||||||||||||||| | |||||||||||||||||| |||||| ||||||||||||||||    
T  20138512 cacaaagcccaaaaaccaacataagtcaaagaactgactcccgatctcaaatcaaaagtgatcgg 20138448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 41893396 - 41893474
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatag 90  Q
    |||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| | |||||  ||||||||||    
T  41893396 cacaaagcccaaaaac-aacttgagacaaagaactgactcccgatctcgaatcaaaagtggttggcccaccagactatag 41893474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 30236128 - 30236247
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||| | |||||||  ||||||||||||||| |||||||||||||||| ||||| |||  ||||||  |  ||||||| ||  ||||||||||      
T  30236128 agcccaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatcgtcccaccagacttcaaaaccaaatcagaagggcacccctta 30236227  T
Q  116 cccccagtacaccagagaaa 135  Q
    ||||| || |||||||||||    
T  30236228 cccccggtccaccagagaaa 30236247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 15906767 - 15906705
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | |||||||  ||||||||||||||| |||||||||||||| |||||||||||    
T  15906767 agcccaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaatgtgatcggccc 15906705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 32945703 - 32945765
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | ||||||| |||||||| ||||||| ||||||||||||||||||||| ||||    
T  32945703 agcccaaaaccaaacttgaatcaaagaattgactcccgatctcgaatcaaaagtgatcagccc 32945765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 33967375 - 33967345
Alignment:
Q  48 ctcctgatctcgaatcaaaagtgatcggccc 78  Q
    |||||||||||||||||||||||||||||||    
T  33967375 ctcctgatctcgaatcaaaagtgatcggccc 33967345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 40531281 - 40531243
Alignment:
Q  48 ctcctgatctcgaatcaaaagtgatcggcccttcagact 86  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  40531281 ctcccgatctcgaatcaaaagtgatcggcccatcagact 40531243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 3679515 - 3679471
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgat 72  Q
    ||||||| |||||| || |||||| ||||||||||||||||||||    
T  3679515 aacttgaatcaaagcaccgactcccgatctcgaatcaaaagtgat 3679471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 12883533 - 12883497
Alignment:
Q  42 aactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    |||| |||||||||||||||||||||| |||||||||    
T  12883533 aactaactcctgatctcgaatcaaaagcgatcggccc 12883497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 39338860 - 39339148
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||  |||||||||||||||||||||| |||||||    
T  39338860 cacaaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagactatagtaccaaattagcagggcacc 39338959  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||| |||||||| ||||||| |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||| |    
T  39338960 cctcgcccccggtacaccaaagaaaaaccaaatcaagtcaaacaaatattgcagctagaccccgactcccgatctcgaagccaaatgaactggcccaccg 39339059  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgt 299  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  39339060 aaaaccagcacacaatatgtaagacgaaagacatggcatgcgaagtttgaacaataaacaaatcaaaaggaaaaggctcaacacaacgt 39339148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 10524187 - 10523873
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaac----tgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctggg 106  Q
    |||| ||||||||||||||||||||||||||||     ||||||| ||||||||||||||||||||||||||  |||||||||| |||||||| || |||    
T  10524187 cacaaagcccaaaaaccaacttgagtcaaagaatatattgactcccgatctcgaatcaaaagtgatcggcccaccagactatagcaccaaattggcaggg 10524088  T
Q  107 cacccctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggccc 206  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| | ||||| || |||||||||||||||||||||||||||||| ||    
T  10524087 cacctctcgcccccagtagaccagagaaaaaccaaatcaagtcaaacaaagattgcaactagagcccgactcccgatctcgaagccaaatgaaccggtcc 10523988  T
Q  207 actgaaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagc 306  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||  || ||    
T  10523987 accgaaaaccagcacacaatatgtaagatgaaagacatggcatgcgaaatttgaacaacaaacaaatcaaaaagaaaaggctcaacacaacgtgacacgc 10523888  T
Q  307 acccttcaaactccg 321  Q
    ||||| |||||||||    
T  10523887 accctacaaactccg 10523873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 7874372 - 7874145
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||  |||||| ||| ||||||| ||| |||||||| |||    
T  7874372 agcccaaaaaccaacttgagtcaaagagctgactcccgatctcgaatcaaaagtgatcgacccaccagactttagaaccaaatcagcagggcacccatcg 7874273  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||| | |||||| |||| || | || |||||||||| | | ||||| |||||||| |  ||||||||||||||||| |||  ||||||||||| | | ||    
T  7874272 ccctcggtacactagag-aacaccatatcaagtcaagc-aggattgcagctagacaccaactcccgatctcgaagcaaaaaaaaccggcccaccggacac 7874175  T
Q  216 cagcacacaatatgtaagatgaaagacatg 245  Q
    ||||||||||||| ||||| || |||||||    
T  7874174 cagcacacaatatttaagacgatagacatg 7874145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 53 - 311
Target Start/End: Complemental strand, 17105456 - 17105197
Alignment:
Q  53 gatctcgaatcaaaa-gtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaaatcaaatcaagtcaa 151  Q
    ||||||||||||||| ||||||||||| |||||||  |||||||||| ||  ||||||||||| ||||  |||||||| ||||| | | ||| |||||||    
T  17105456 gatctcgaatcaaaaagtgatcggcccatcagacttcagtaccaaatcagtagggcacccctcacccctggtacaccaaagaaacacctaattaagtcaa 17105357  T
Q  152 acaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaatatgtaagatgaaagacatggcatgc 251  Q
    |||| | ||| |||||||| | ||||||  ||||| |||| |||  ||||| ||||| | ||||||||||||||||||||||||||||||||||  |||     
T  17105356 acaagg-ttgcagctagacgccgactccttatctccaagcaaaagtaaccgacccaccggaaaccagcacacaatatgtaagatgaaagacatgatatga 17105258  T
Q  252 ga-agtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcaccct 311  Q
    ||  ||  ||||| |||||||||||||||||||||||| | |||||||   ||||||||||    
T  17105257 gatggtgcaaacaccaaacaaatcaaaaggaaaaggctcatcacaacgggacaagcaccct 17105197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 387250 - 387151
Alignment:
Q  20 caaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccc 119  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||  |||||| ||||||||||||||| ||||||||||||||||    
T  387250 caaaaaccaacttgagtcaaagaattgactcccgatctcaaatcaaaagtgatcagcccaccagactttagtaccaaattagcagggcacccctcgcccc 387151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 14405279 - 14405162
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||  |||||| ||| ||||||| | |   ||||||||||    
T  14405279 agcccaaaaaccaacttgagccaaagagctgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcatc-aagcacccctcg 14405181  T
Q  116 cccccagtacaccagagaa 134  Q
    ||||| |||||||||||||    
T  14405180 cccccggtacaccagagaa 14405162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 1269562 - 1269373
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcc 117  Q
    ||||||| | |||||||| ||||||||||||| | ||||||||||||||||||||||||||  |||||| ||| || |||| ||  ||||||||||| ||    
T  1269562 cccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttaggactaaatcagaagggcacccctcacc 1269463  T
Q  118 cccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggccca 207  Q
        ||| |||||||||| ||||||| ||| ||||  |||| || ||||||||   |||||||||||||||||| |||| ||||| ||||    
T  1269462 tttggtataccagagaaacatcaaattaagccaaaacaagaatgcagctagacatcgactcccgatctcgaagcaaaattaaccgaccca 1269373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 227
Target Start/End: Original strand, 14106546 - 14106734
Alignment:
Q  38 aaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaaa 137  Q
    ||||| |||||||| ||||| ||||||||||||||||||||  |||||| ||| ||||||| ||| |||||||||||||||   |||||  |||| || |    
T  14106546 aaagagctgactcccgatcttgaatcaaaagtgatcggcccaccagactttaggaccaaatcagcagggcacccctcgccctgggtacatgagaggaaca 14106645  T
Q  138 tcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaata 227  Q
     ||||||||||||||| | ||||| |||||| | | |||||||  ||||||||| |||  ||||||||||| | |||||| |||||||||    
T  14106646 ccaaatcaagtcaaac-aggattgcagctagtcaccgactccctgtctcgaagcaaaagtaaccggcccaccggaaaccaacacacaata 14106734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 13337352 - 13337285
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagact 86  Q
    |||||| | |||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||    
T  13337352 ccaaaacctaacttgagtcaaagaactgacttccgatttcgaatcaaaagtgatcggcccatcagact 13337285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 225
Target Start/End: Original strand, 37770663 - 37770849
Alignment:
Q  38 aaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaaa 137  Q
    |||||| ||||||||||||  ||||||||||||||||||||  || ||  ||| ||||||| || |||||||||||| ||| | |||||||||||||| |    
T  37770663 aaagaattgactcctgatccagaatcaaaagtgatcggcccaccaaaccttaggaccaaatcagatgggcacccctcaccctcggtacaccagagaaaca 37770762  T
Q  138 tcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
      |||||  | ||||   | ||||  ||||||| |  ||||||||||||||||| |||  ||||||||||| || |||||||| ||||    
T  37770763 ctaaatcgcgccaaatcga-attgctgctagacaccaactcccgatctcgaagcaaaagtaaccggcccaccgataaccagcaaacaa 37770849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 4472004 - 4471942
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||||| | |||||||||    
T  4472004 agcccaaaaacaaacttgaatcaaagaactgactcccgatctcgaatcaaaggcgatcggccc 4471942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 22885135 - 22885195
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||| | |||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  22885135 cccaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaaagtgatcggccc 22885195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 16960063 - 16960001
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | |||||||| ||||||||||||||  |||||||||||||||| |||||||||    
T  16960063 agcccaaaaccaaacttgagccaaagaactgactctcgatctcgaatcaaaagcgatcggccc 16960001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 34230282 - 34230220
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | |||||||  |||||||||||||||||||||||||| |||| ||||||||||    
T  34230282 agcccaaaatcaaacttgatccaaagaactgactcctgatctcgaataaaaaatgatcggccc 34230220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 7696044 - 7695985
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcgg 75  Q
    ||||||||| | |||||||| ||||||||||||||| | | |||||||||||||||||||    
T  7696044 agcccaaaacctaacttgagccaaagaactgactcccggtatcgaatcaaaagtgatcgg 7695985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 2062970 - 2062908
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | |||||||| |||||| |||||||| ||||||||||||||||  ||||||||    
T  2062970 agcccaaaaccaaacttgagccaaagagctgactcccgatctcgaatcaaaagcaatcggccc 2062908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 10173578 - 10173640
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | |||||||| |||| |||| ||| | ||||||||||||||||||||||||||    
T  10173578 agcccaaaaccaaacttgagccaaataacttacttccgatctcgaatcaaaagtgatcggccc 10173640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 15126410 - 15126472
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | ||| |||| |||||||| |||||| ||||||||||||||| ||||||||||    
T  15126410 agcccaaaaccaaacatgagccaaagaaccgactcccgatctcgaatcaaaaatgatcggccc 15126472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 41086823 - 41086994
Alignment:
Q  51 ctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaaatcaaatcaagtca 150  Q
    |||||||||||||||||||||| | |||  |||||||||  ||||||| ||  ||||| ||||| ||||  ||||||||||| || | ||||||| | ||    
T  41086823 ctgatctcgaatcaaaagtgattgacccaccagactatatgaccaaatcagaagggca-ccctcacccctggtacaccagag-aacaccaaatcacgcca 41086920  T
Q  151 aacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    |||||| ||||||||| ||| | || |||||||||| |||| |||  || ||| |||| | ||||| ||||||||    
T  41086921 aacaaa-attgtagctggacaccgattcccgatctcaaagcaaaagtaatcggtccaccggaaacctgcacacaa 41086994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 5254337 - 5254275
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||| |||||||||||||  |||||| | |||||| |||||| ||| |||||||||||||||    
T  5254337 agcccgaaaaccaacttgaaccaaagagcagactcccgatctcaaattaaaagtgatcggccc 5254275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 7695906 - 7695869
Alignment:
Q  259 aaacaacaaacaaatcaaaaggaaaaggctgaacacaa 296  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  7695906 aaacaacaaacatatcaaaaggaaaaggctcaacacaa 7695869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 16952386 - 16952443
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggc 76  Q
    |||||| | |||||||| |||||||||| |||| |||||||||||||||  |||||||    
T  16952386 ccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaaaagatcggc 16952443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 17023051 - 17023108
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggc 76  Q
    |||||| | |||||||| |||||||||| |||| |||||||||||||||  |||||||    
T  17023051 ccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaaaagatcggc 17023108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 17060357 - 17060414
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggc 76  Q
    |||||| | |||||||| |||||||||| |||| |||||||||||||||  |||||||    
T  17060357 ccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaaaagatcggc 17060414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 17079247 - 17079190
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggc 76  Q
    |||||| | |||||||| |||||||||| |||| |||||||||||||||  |||||||    
T  17079247 ccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaaaagatcggc 17079190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 27740029 - 27739936
Alignment:
Q  43 actgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaa 136  Q
    ||||||||  ||||| |||||||||| |||||||||  ||||||  || |||||   || |||||||||||  |||||||| ||||||||||||    
T  27740029 actgactctcgatcttgaatcaaaagcgatcggcccaccagacttcaggaccaatccagatgggcacccctaacccccagtccaccagagaaaa 27739936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 33788653 - 33788694
Alignment:
Q  37 caaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    |||||||||||||||  ||||||||||||||| |||||||||    
T  33788653 caaagaactgactcccaatctcgaatcaaaagcgatcggccc 33788694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 42048229 - 42048278
Alignment:
Q  29 acttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    |||||||||||| ||||| |||| | ||||||||||||||||||| ||||    
T  42048229 acttgagtcaaaaaactggctcccggtctcgaatcaaaagtgatcagccc 42048278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 23650444 - 23650384
Alignment:
Q  38 aaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaat 98  Q
    |||||| ||||||| |||||||||||||||| |||| ||||  |||||| ||| |||||||    
T  23650444 aaagaaatgactcccgatctcgaatcaaaagcgatcagcccaccagactctagaaccaaat 23650384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 37831072 - 37831024
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggc 76  Q
    ||||||||||||  |||||||| | ||| ||||||||||||||||||||    
T  37831072 aacttgagtcaagaaactgacttcagatttcgaatcaaaagtgatcggc 37831024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 30964520 - 30964217
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcc 117  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  30964520 cccaaaaaccaacttgagtcaaagaacggactcccgatcacgaatcaaaagtgatcggcccatcagattatagtaccaaattagcagggcacccctcgcc 30964421  T
Q  118 cccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaacca 217  Q
    | | |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||  ||||||||    
T  30964420 ctcggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgacttccgatctcgaagccaaatgaaccggcccatcgaaaacca 30964321  T
Q  218 gcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcacccttcaaac 317  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||  || ||||||| |||||    
T  30964320 gcacacaataagtaagacgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggttcaacacaacgtgacacgcaccctccaaac 30964221  T
Q  318 tccg 321  Q
    ||||    
T  30964220 tccg 30964217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 8255108 - 8254805
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||    
T  8255108 agcccaaaaaccaacttgagtcaaagaactgacttctgatctcggatcaaaagtgatcggcccaccagactttagtaccaaattagcagggcacccctcg 8255009  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||  |||||||||  |||||||||||||||||||||| |||||||||||| ||||||    
T  8255008 cccccggtacaccagagaaaaaccaaatcaagtgaaacaaagattacagctagacctcgactcccgatctcgaagccaaaagaaccggcccaccgaaaac 8254909  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcacccttcaa 315  Q
    || |||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||| |   || |||||||||||    
T  8254908 caacacacaatatgtaagacgaaagacatggcatgcaaagtttaaacaacaaacgaatcaaaaggaaaaggctcaacacaaagcgacacgcacccttcaa 8254809  T
Q  316 actc 319  Q
    ||||    
T  8254808 actc 8254805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 8268526 - 8268223
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||    
T  8268526 agcccaaaaaccaacttgagtcaaagaactgacttctgatctcggatcaaaagtgatcggcccaccagactttagtaccaaattagcagggcacccctcg 8268427  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||  |||||||||  |||||||||||||||||||||| |||||||||||| ||||||    
T  8268426 cccccggtacaccagagaaaaaccaaatcaagtgaaacaaagattacagctagacctcgactcccgatctcgaagccaaaagaaccggcccaccgaaaac 8268327  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcacccttcaa 315  Q
    || |||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||| |   || |||||||||||    
T  8268326 caacacacaatatgtaagacgaaagacatggcatgcaaagtttaaacaacaaacgaatcaaaaggaaaaggctcaacacaaagcgacacgcacccttcaa 8268227  T
Q  316 actc 319  Q
    ||||    
T  8268226 actc 8268223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 4305811 - 4305523
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||| ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| |||  |||||||||||||||||||||| |||||||    
T  4305811 cacaaagcctaaaaaccaacttgagacaaagaactaactcccgatctcgaatcaaaagtgatcgccccaccagactatagtaccaaattagcagggcacc 4305712  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
     || |||||| ||||||||||||||||  ||||| |||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||| |    
T  4305711 gcttgcccccggtacaccagagaaaaacgaaatccagtcaaacaaagattgcaactagcccccgactcccgatctcgaagccaaatgaaccggcccaccg 4305612  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgt 299  Q
    |||||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  4305611 aaaaccagtacacaatatgtaagacaaaagacatggcaagcgaagtttaaacaacaaacaaaactaaaggaaaaggctcaacacaacgt 4305523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 30167566 - 30167736
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcc 117  Q
    |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||| |||    ||||||| ||||||||  || ||||||||||| ||    
T  30167566 cccaaaaatcaacttgagtcaaagaaccgactcccgatctcgaatcaaaagtgatcgacccacttgactataataccaaataggcagggcacccctcacc 30167665  T
Q  118 cccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaa 189  Q
    ||  | ||| || ||||||   ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  30167666 ccg-gcacatcaaagaaaacctaaatcaaatcaaacaaagattgtagctagaccccgactcccgatctcgaa 30167736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 25753253 - 25753045
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||| |||  |||||| ||| ||||||| ||  |||||| ||||     
T  25753253 agcccaaaatcaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcgccccaccagactttaggaccaaataagacgggcactcctca 25753154  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    || || |||||||||||||| | || |||| | ||||| ||||||| |||||||| | |||||||||||||||||| |||| || | |||||  | ||||    
T  25753153 cctccggtacaccagagaaacaccacatcacgccaaac-aagattgcagctagacaccgactcccgatctcgaagcaaaattaagctgcccatcggaaac 25753055  T
Q  216 cagcacacaa 225  Q
    ||||| ||||    
T  25753054 cagcaaacaa 25753045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 53823423 - 53823612
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcc 117  Q
    ||||||| | |||||||| ||||||||||||||| |||||||||||||||||||| || ||  |||||| ||  ||||||| ||  ||||||||||| ||    
T  53823423 cccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgattggtccaccagactttatgaccaaatcagaagggcacccctcacc 53823522  T
Q  118 cccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccac 208  Q
     || |||||||||||||| | ||| ||||| ||| | ||||||| || ||||| | |||||||||||||||||| |||  |||||||||||    
T  53823523 tccggtacaccagagaaacaccaagtcaagccaagc-aagattgcagttagacaccgactcccgatctcgaagcaaaagtaaccggcccac 53823612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 31050662 - 31050871
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||||  |  |||||| || ||| | ||||||||||||||||||||||||||  |||||| ||| ||||||| ||  ||||||||||||    
T  31050662 agcccaaaaaccaactcaaaccaaagacctaacttccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcagtagggcacccctcg 31050761  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| ||||| || || || | || |||||||||||| | ||||| |||||| | | |||||||| ||||||||| |||  ||||||||||| | ||||    
T  31050762 cccccggtacatcaaag-aacaccatatcaagtcaaac-aggattgcagctagtcaccgactcccggtctcgaagcaaaagtaaccggcccaccggaaac 31050859  T
Q  216 cagcacacaata 227  Q
    || |||| ||||    
T  31050860 caacacataata 31050871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 19673169 - 19672989
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||  || ||  |||||| ||| ||||||  ||  ||||||||||| |||||  |  ||    
T  19673169 aacttgagccaaagaactgactcctgatctcgaat-aaaagggaatggtccaccagactttaggaccaaaacagaagggcacccctcacccccgatcaac 19673071  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||| |||| |||||| ||||||| ||||| |||||||| | |||||||||||||||||| |||  |||||||||||||    
T  19673070 cagagaaatatcatatcaagccaaacaa-gattgcagctagacactgactcccgatctcgaagcaaaagtaaccggcccactg 19672989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 22811172 - 22811367
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    |||||||| ||||||||||||||| |||||||||| |||| ||||||||||  |||||| ||  ||||||| ||  |||||| |||| |||| | |||||    
T  22811172 aacttgagccaaagaactgactcccgatctcgaataaaaaatgatcggcccaccagactttaagaccaaatcagaagggcactcctcaccccga-tacac 22811270  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    |||||||| | |||||||   |||||||| |||| | |||||| |  | | ||||||||||||| |||  ||||| ||||| ||||||||||||||||    
T  22811271 cagagaaacaccaaatcacaccaaacaaa-attgcaactagacaccaagttccgatctcgaagcaaaagtaaccgacccaccgaaaaccagcacacaa 22811367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 19815236 - 19815415
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    |||||||| |||||||||||||||||||||||||| |||||| ||||| ||  |||||| ||| ||||||  ||  ||||||||||| ||||| ||  ||    
T  19815236 aacttgagccaaagaactgactcctgatctcgaataaaaagtaatcggtccaccagactttaggaccaaaacagaagggcacccctcacccccggtcaac 19815335  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccac 208  Q
    |||| ||| |  | |||||| ||||| ||||||| |||||||| | ||||| |||||||||||| |||  ||| |||||||    
T  19815336 cagaaaaatacaatatcaagccaaac-aagattgcagctagacaccgactctcgatctcgaagcaaaagtaactggcccac 19815415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 39421042 - 39421187
Alignment:
Q  45 tgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaaatcaaatc 144  Q
    ||||||| ||||||||||||||||||||||||||  ||| |||||  |||| || ||  ||||||||||| ||| |||||||  ||||||| | ||||||    
T  39421042 tgactcccgatctcgaatcaaaagtgatcggcccaccaggctataagaccatatcagaagggcacccctcaccctcagtacattagagaaacaccaaatc 39421141  T
Q  145 aagtcaaacaaagattgtagctagacccggactcccgatctcgaagc 191  Q
    | | ||||| ||||||| |||||||| | || |||||||||||||||    
T  39421142 acgccaaac-aagattgcagctagacaccgattcccgatctcgaagc 39421187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 2825864 - 2825691
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||||||||||||  ||||| ||||||  ||| ||| ||||||||||||||| ||||||||||  | |||| ||| ||||||| ||| | ||||||||||    
T  2825864 agcccaaaaaccacattgagccaaagaggtgattcccgatctcgaatcaaaaatgatcggcccaccggactttagaaccaaatcagcagagcacccctcg 2825765  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagc 191  Q
    ||| | ||||||||||| || | || |||||||||||| | ||||| |||||||| |  |||| | ||||||||||    
T  2825764 ccctcggtacaccagag-aacaccatatcaagtcaaac-atgattgcagctagacaccaactctcaatctcgaagc 2825691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 38929908 - 38929846
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  38929908 agcccaaaatcaaacttgagccaaagaactgactcttgatctcgaatcaaaagtgatcggccc 38929846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 36962626 - 36962677
Alignment:
Q  26 ccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  36962626 ccaacttgagtcaaaga-ctgactcctgatctcgaatcaaaagtaatcggccc 36962677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 38637238 - 38637305
Alignment:
Q  22 aaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactata 89  Q
    |||||| |||| || ||||||| ||||||| ||||||||||||||||||||||||||  |||||||||    
T  38637238 aaaacctacttaagccaaagaattgactcccgatctcgaatcaaaagtgatcggcccgccagactata 38637305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 39041285 - 39041336
Alignment:
Q  27 caacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||||    
T  39041285 caacttgagtctagaaactgactcctgatctcgaatcaaaagtgatcggccc 39041336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 46698784 - 46698881
Alignment:
Q  16 agcccaaaaaccaa-cttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccc 112  Q
    ||||||||||| || |||||  ||||||||||||||| ||||||||||||||||  ||||||||  ||||||| || ||||||| ||  |||||||||    
T  46698784 agcccaaaaacaaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcaatcggcccaccagactacaggaccaaatcagaagggcacccc 46698881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 2792286 - 2792335
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcc 77  Q
    ||||||||||||  |||||||| | |||||||||||||||||||||||||    
T  2792286 aacttgagtcaagaaactgacttccgatctcgaatcaaaagtgatcggcc 2792335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 41117967 - 41118040
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactata 89  Q
    ||||||||| | || ||||| ||||||||| ||| | |||||||||||||||||||||  |||| |||||||||    
T  41117967 agcccaaaacctaatttgagccaaagaacttacttccgatctcgaatcaaaagtgatcttccctccagactata 41118040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 21387216 - 21387263
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcgg 75  Q
    ||||||| || ||||||||||| | |||||||||||||||||||||||    
T  21387216 aacttgaatcgaagaactgacttccgatctcgaatcaaaagtgatcgg 21387263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 28966948 - 28966897
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaa 67  Q
    ||||||||| | |||||||| |||||||||||||||  ||||||||||||||    
T  28966948 agcccaaaaccaaacttgagccaaagaactgactcccaatctcgaatcaaaa 28966897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 35800570 - 35800511
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcgg 75  Q
    ||||||||| | |||| || |||||||||||||| | |||||||||||||||| ||||||    
T  35800570 agcccaaaaccaaactggaatcaaagaactgacttccgatctcgaatcaaaagcgatcgg 35800511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 16501812 - 16501750
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | |||| ||  |||||| |||||||| |||||||||||||||| |||||||||    
T  16501812 agcccaaaaccaaactagaaccaaagagctgactcccgatctcgaatcaaaagcgatcggccc 16501750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 78
Target Start/End: Original strand, 17416541 - 17416571
Alignment:
Q  48 ctcctgatctcgaatcaaaagtgatcggccc 78  Q
    |||||||||||||||||||||||||||||||    
T  17416541 ctcctgatctcgaatcaaaagtgatcggccc 17416571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 35341341 - 35341391
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagt 69  Q
    ||||||||||||||||| |||||| |||||| | ||||||| |||||||||    
T  35341341 ccaaaaaccaacttgagccaaagagctgacttccgatctcggatcaaaagt 35341391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 40813797 - 40813843
Alignment:
Q  32 tgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| || || |||| ||||||||||||||||||||||||||    
T  40813797 tgagtcaaaaaattggctcccgatctcgaatcaaaagtgatcggccc 40813843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 37707388 - 37707417
Alignment:
Q  49 tcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||||||||||||||||||||||||    
T  37707388 tcctgatctcgaatcaaaagtgatcggccc 37707417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 12296256 - 12296204
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaag 68  Q
    ||||||||| | |||||||  |||||||||||||  |||||||||||||||||    
T  12296256 agcccaaaatcaaacttgaaccaaagaactgacttttgatctcgaatcaaaag 12296204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 49747586 - 49747526
Alignment:
Q  38 aaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaat 98  Q
    |||||||||||||  |||||| ||||||||||||||||| |  |||||| ||| |||||||    
T  49747586 aaagaactgactctcgatctcaaatcaaaagtgatcggctcaccagactttagaaccaaat 49747526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 698447 - 698137
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||||||||||||||||||||||||||  ||||||| |||||||||||||||| |||||| ||  |||||||||| ||||||||||| |||||||    
T  698447 cacaaagcccaaaaaccaacttgagtcaaagagttgactcccgatctcgaatcaaaagagatcggtccaccagactatagcaccaaattagcagggcacc 698348  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||     
T  698347 cctcgcccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcaactagaccctgactcccgatctcgaagccaaatgaaccggcccacta 698248  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcaccc 310  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||| |||||  ||  |||||    
T  698247 aaaaccagcacacaatatgtaagacgaaagacatggcatgcgaagtttgaacaacaaacatatcaaaaagaaaaggctcaacataacgtgacacacaccc 698148  T
Q  311 ttcaaactccg 321  Q
    | |||||||||    
T  698147 tccaaactccg 698137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 18593324 - 18593019
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||   | ||||||| ||||||||||| ||||| ||||||    
T  18593324 agcccaaaaaccaacttgagtcaaagaactaactcccgatctcgaatcaaaagtgatctgcccactaaactatagcaccaaattagcagggcatccctcg 18593225  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||     
T  18593224 cccccggtacacgagagaaaaaccaaatcaagtcaaacaaagattgcaactagaccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaat 18593125  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcacccttcaa 315  Q
    ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||  || ||||||| |||    
T  18593124 cagcacacaatatgtaaaacgaaagacatggcatgcgaagtttgaacaacaaacaaatcaaaaagaaaaggctcaacataacgtgacatgcaccctccaa 18593025  T
Q  316 actccg 321  Q
    ||||||    
T  18593024 actccg 18593019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 34378179 - 34377907
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||  |||||| ||||||||||||||| |||||| ||| |    
T  34378179 agcccaaaaaccaacttgtgtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactttagtaccaaattagcagggcactccttg 34378080  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||| || ||||||    
T  34378079 cccccggtacaccagagaaaacccaaatcaagtcaaacaaagattgcagctagacctcgactcccgatctcgaagccaaatgaaccggcctaccgaaaac 34377980  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggct 288  Q
    |||||||| |||| ||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||    
T  34377979 cagcacacgatatataagacgaaagatatggcatacgaagtttaaacaacaaacgaatcaaaaggaaaaggct 34377907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 29087562 - 29087364
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||||| ||||||| |||| ||||||||||||||||||||||||||||||||| |||| | ||  |||||| ||| |||||| |||| | ||||||||||    
T  29087562 agcccagaaaccaatttgattcaaagaactgactcctgatctcgaatcaaaagggatcagtccaccagactttagaaccaaaatagcagagcacccctcg 29087463  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaa 214  Q
    ||||| ||||| |||||||  | |||| |||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  29087462 cccccggtacaacagagaattaccaaaacaagtcaaacaaagattgcagctagactccgactcccgatctcgaagccaaatgaaccggcccaccgaaaa 29087364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 13954234 - 13954441
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||| | |||||||| ||||| | ||||||| ||||||||||||||||||||||||||  |||||| ||| ||||||| ||   ||||||||||     
T  13954234 agcccaaaaccaaacttgagccaaagtaatgactcccgatctcgaatcaaaagtgatcggcccaccagactttaggaccaaatcag-aaggcacccctca 13954332  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||  | |||||||||||||| |  |||||||||||||  ||||||| |||||||| | |||||  ||||||||||| |||  ||||||||||| ||||||    
T  13954333 ccttcggtacaccagagaaacacaaaatcaagtcaaa-taagattgcagctagacaccgactcttgatctcgaagcaaaagtaaccggcccaccgaaaac 13954431  T
Q  216 cagcacacaa 225  Q
    ||||| ||||    
T  13954432 cagcatacaa 13954441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 7392052 - 7392205
Alignment:
Q  37 caaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaa 136  Q
    ||||||||||||||| ||||||||||||||||||||||| ||  |||||| ||| ||||||| ||  ||||||||||| ||| | ||||| ||||||||     
T  7392052 caaagaactgactcccgatctcgaatcaaaagtgatcggtccaccagactttaggaccaaatcagaagggcacccctcaccctcggtacatcagagaaac 7392151  T
Q  137 atcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagc 191  Q
    | ||||||||| ||||| ||||||| |||||||| |  |||||||||||||||||    
T  7392152 accaaatcaagccaaac-aagattgcagctagacaccaactcccgatctcgaagc 7392205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 8297546 - 8297347
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgccc 118  Q
    |||||| | |||||||| ||||||||||||||| ||||||||||||||| | ||  ||||  ||  || ||| ||||||| ||  ||||||||||| |||    
T  8297546 ccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaaattattagcccaccatgctttagaaccaaatcagaagggcacccctcaccc 8297447  T
Q  119 ccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccag 218  Q
     | |||||| ||||||| | |||||||||  ||||||| |||| |||||||| |  |||| |||||||||||| |||  || ||||||||||||||||||    
T  8297446 tcggtacactagagaaacaccaaatcaagcaaaacaaa-attgcagctagacaccaactctcgatctcgaagcaaaagtaatcggcccactgaaaaccag 8297348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 7195251 - 7195447
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| |  |||||| ||   |||||| ||  |||||||||||  |||  ||||||    
T  7195251 aacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcggctcaccagactttatggccaaatcagaagggcacccctc-accctggtacac 7195349  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccact-gaaaaccagcacacaa 225  Q
    |||||||| |  |||||| | ||||| || |||| |||||| | | |||||||||||||||||| |||  ||| |||||||| |||||||| |||||||    
T  7195350 cagagaaacactaaatcacgccaaac-aatattgcagctagccaccgactcccgatctcgaagcaaaagtaactggcccactggaaaaccaacacacaa 7195447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 33258903 - 33259050
Alignment:
Q  37 caaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaa 136  Q
    ||||||||| ||||||||||||||||||||||||||||||||  |||||| ||| ||||||  ||  || |||||||| ||  | ||||||||||||||     
T  33258903 caaagaactaactcctgatctcgaatcaaaagtgatcggcccaccagactttagcaccaaaacagaaggacacccctcaccttcggtacaccagagaaac 33259002  T
Q  137 atcaaatcaagtcaaacaaagattgtagctagacccggactcccgatct 185  Q
    | ||||||  | ||||| |||||||||||||||  | ||||||||||||    
T  33259003 accaaatcgcgccaaac-aagattgtagctagataccgactcccgatct 33259050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 14302430 - 14302604
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||| | ||||||   |||||||||||||||  |||||||| ||||||||||| | ||  |||||| ||| ||||||  ||  ||||| |||||     
T  14302430 agcccaaaaccaaacttgctccaaagaactgactcccaatctcgaaccaaaagtgatcagtccaccagactttaggaccaaaacagaagggcatccctca 14302529  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagc 191  Q
    ||| |  ||||||||||||| | || |||| | |||||  || ||| |||||||| ||||||||||||||||||||    
T  14302530 ccctcgatacaccagagaaacaccagatcacgccaaac-tagcttgcagctagacacggactcccgatctcgaagc 14302604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 22675324 - 22675375
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaa 67  Q
    ||||||||| | |||||||| ||||||||||||||| |||||||||||||||    
T  22675324 agcccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaa 22675375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 25992066 - 25991936
Alignment:
Q  38 aaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaaa 137  Q
    |||||||||||||  |||||||||||||||| ||| |||||  |||||| ||| |||||| |||  |||||| ||||  |  | |||||||||| ||| |    
T  25992066 aaagaactgactctcgatctcgaatcaaaagcgattggcccaccagactttagcaccaaaatagaagggcactcctcatcttcggtacaccagaaaaaca 25991967  T
Q  138 tcaaatcaagtcaaacaaagattgtagctaga 169  Q
    |||||||  ||||||| ||||||| |||||||    
T  25991966 tcaaatcgtgtcaaac-aagattgcagctaga 25991936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 31721734 - 31721639
Alignment:
Q  40 agaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaa 135  Q
    |||||||||||| |||||||||||||||| ||||||||| | |||||  || |||| || ||  ||||||||||  ||||| || |||||||||||    
T  31721734 agaactgactcccgatctcgaatcaaaagcgatcggcccattagacttcagaaccacatcagaagggcaccccttacccccggtccaccagagaaa 31721639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 21402853 - 21402899
Alignment:
Q  32 tgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    |||||||||||||||||||| |||||||||  |||||||||||||||    
T  21402853 tgagtcaaagaactgactcccgatctcgaactaaaagtgatcggccc 21402899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 27713150 - 27713088
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | |||||||| ||||||||||| ||| |||||||||||||||  |||||||||    
T  27713150 agcccaaaaccaaacttgagccaaagaactgattcccgatctcgaatcaaaaacgatcggccc 27713088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 7162319 - 7162352
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcc 51  Q
    ||||||||||||||||||||||||||||||||||    
T  7162319 cccaaaaaccaacttgagtcaaagaactgactcc 7162352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 39184208 - 39184249
Alignment:
Q  37 caaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  39184208 caaagaactgacttccgatctcgaatcaaaagtgatcggccc 39184249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 26045967 - 26046023
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcgg 75  Q
    |||||| | |||||||| ||||  ||| ||||| |||||||||||||||||||||||    
T  26045967 ccaaaaccaaacttgagccaaaacactaactcccgatctcgaatcaaaagtgatcgg 26046023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 20611864 - 20611562
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||  || |||||||||| |||||||| ||||||||||||    
T  20611864 agcccaaaaaccaacttaagtcaaagaactgactcccgatctcgaatcaaaaatgatcggcccaacaaactatagtacgaaattagcagggcacccctcg 20611765  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||||||| |||||||||||| ||||| ||||||    
T  20611764 cccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctagaccccgactcctgatctcgaaaccaaatgaaccgacccaccgaaaac 20611665  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcacccttcaa 315  Q
    ||||||||||||||||||| |||| |||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||  || ||||||| |||    
T  20611664 cagcacacaatatgtaagacgaaaaacatagcatgcgaagtttgaacaataaacaaatcaaaaggaaaaggctcaacacaacgtgacacgcaccctccaa 20611565  T
Q  316 act 318  Q
    |||    
T  20611564 act 20611562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 2392501 - 2392771
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| ||||||||||||||||| || ||||||||||||| |  |||||||||||||||||||||| ||  ||| |||||||||||||||||| |||||||    
T  2392501 cacaaagcccaaaaaccaacttaagacaaagaactgacttccaatctcgaatcaaaagtgatcggtccaccaggctatagtaccaaattagcagggcacc 2392600  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||| ||||||||||| |||| |||| |||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||  |    
T  2392601 cctcgcccccggtacaccagagtaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatcttgaagccaaatgaaccgtcccatcg 2392700  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaagga 281  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||    
T  2392701 aaaaccagcacacaatatgtaagacgaaagacatggcgtgcgaagtttaaataacaaacaaatcaaaagga 2392771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 34475749 - 34476058
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||||||||| |||||| | || ||||  ||||||| ||||||||||||||||||||||||||  |||||||||| | ||||||||| |||||||    
T  34475749 cacaaagcccaaaaatcaacttaattccaagatttgactcccgatctcgaatcaaaagtgatcggcccaccagactatagaaacaaattagcagggcacc 34475848  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactg 210  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||| |||||||  |    
T  34475849 cctcgcccccggtacaccagagaaaaatcaaaccaagtcaaacaaaaattgcagctagaccccgactcccgatctcgaagccaaatgaatcggcccatcg 34475948  T
Q  211 aaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcaccc 310  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||||||||| ||||||||||||| || |||||||  ||  |||||    
T  34475949 aaaaccagcacacgatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaacaaatccaaaggaaaaggctcaa-acaacgtgacacccaccc 34476047  T
Q  311 ttcaaactccg 321  Q
    | |||||||||    
T  34476048 tccaaactccg 34476058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 2394255 - 2394518
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcc 117  Q
    ||||||||||||||| || ||||||||||||| |  |||||||||||||||||||||| ||  ||| |||||||||||||||||| ||||||||||||||    
T  2394255 cccaaaaaccaacttaagacaaagaactgacttccaatctcgaatcaaaagtgatcggtccaccaggctatagtaccaaattagcagggcacccctcgcc 2394354  T
Q  118 cccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaacca 217  Q
    ||| ||||||||||| |||| |||| |||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||  ||||||||    
T  2394355 cccggtacaccagagtaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatcttgaagccaaatgaaccgtcccatcgaaaacca 2394454  T
Q  218 gcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaagga 281  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||    
T  2394455 gcacacaatatgtaagacgaaagacatggcgtgcgaagtttaaataacaaacaaatcaaaagga 2394518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 19176583 - 19176316
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||| ||| ||||||||||| |||||||| ||     
T  19176583 agcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaattagcagggcaccc-tca 19176485  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    | ||| ||||| |||||||||| ||||| ||||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||| |||||| ||||||    
T  19176484 ctcccggtacatcagagaaaaaccaaattaagtcaaacaaagattgcagctagaccccgactcctgatctcgaagccaaaggaaccagcccaccgaaaac 19176385  T
Q  216 cagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaa 284  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||    
T  19176384 cagcacacaataagtaagaggaaagacatggcatgtgaagtttaaccaacaaacaaatcacaaggaaaa 19176316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 84 - 321
Target Start/End: Complemental strand, 47235729 - 47235492
Alignment:
Q  84 actatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgat 183  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||  |||||||| |||| |||||||||||||||||| |||||||||| ||||||||||    
T  47235729 actatagtcccaaattagcagggcacccctcgcccccggtacactggagaaaaaccaaaccaagtcaaacaaagattgcagctagaccctgactcccgat 47235630  T
Q  184 ctcgaagccaaatgaaccggcccactgaaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaa 283  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  47235629 ctcgaagccaaatgaaccggcccatcgaaaaccagcacacattatgtaagacgaaagacatggcgtgcgaagtttaaacaacaaacaaatcaaaaggaaa 47235530  T
Q  284 aggctgaacacaacgttgcaagcacccttcaaactccg 321  Q
    ||||| ||||||||||  || ||||||| |||||||||    
T  47235529 aggctcaacacaacgtgacacgcaccctccaaactccg 47235492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 45163941 - 45163651
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttc--agactatagtaccaaattagctgggca 108  Q
    |||| ||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||     ||||||||||||||||||||| |||||    
T  45163941 cacaaagcccaaaaaccaacttaagacaaaaaactgacttctgatctcgaatcaaaagtgatcggcccacacaagactatagtaccaaattagcagggca 45163842  T
Q  109 cccctcgcccccagtaca----ccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggc 204  Q
    |||||||||| | |||||    | |||||||||||||| |||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||||    
T  45163841 cccctcgccctcggtacatgcactagagaaaaatcaaaccaagtcaaacaaagattgcagctagaccccgacttccgatcttgaagccaaatgaaccggc 45163742  T
Q  205 ccactgaaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacaca 295  Q
    | |   |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||| ||| || ||||||    
T  45163741 ctatcaaaaaccagcacacaatatgtaagacgaaagacatggcgtgcgaagtttaaataacaaacaaataaaaaggacaagactcaacaca 45163651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 23328354 - 23328564
Alignment:
Q  20 caaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccc 119  Q
    |||||||||||||||| |||| | || ||||| ||||||||||||||||||||||| ||  || ||| ||| ||||||| | | ||||||||||||||||    
T  23328354 caaaaaccaacttgagccaaaaagctaactcccgatctcgaatcaaaagtgatcggtccaccaaactttagaaccaaatcaacagggcacccctcgcccc 23328453  T
Q  120 cagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagc 219  Q
    | ||||||||||| || | || ||||||||||||||| |||| |||||||| |  ||||||||||||||||| |||  ||||||||||  | | ||||||    
T  23328454 cggtacaccagag-aacaccatatcaagtcaaacaaa-attgcagctagacaccaactcccgatctcgaagcaaaa--aaccggcccatcggacaccagc 23328549  T
Q  220 acacaatatgtaaga 234  Q
    |||||||||||||||    
T  23328550 acacaatatgtaaga 23328564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 17551043 - 17550965
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactata 89  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  17551043 cacaaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactata 17550965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 25647753 - 25647557
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    ||||| || ||||||||  ||||| |||||||||||||||||||| ||||| ||||||| ||| ||||||| ||  |||||||| || | ||| ||||||    
T  25647753 aacttaagccaaagaaccaactcccgatctcgaatcaaaagtgataggcccgtcagactttaggaccaaatcagaagggcacccttcactcccggtacac 25647654  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    |||||||| | ||||||| | |||||| | |||| |||||||| | |||||||| ||||||||| |||  ||||||||||  | |||||| |||||||    
T  25647653 cagagaaacaccaaatcacgccaaacaga-attgcagctagacaccgactcccgttctcgaagcaaaagtaaccggcccatcggaaaccaacacacaa 25647557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 40023572 - 40023799
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||||| || |||||||  |||||| ||||||||||||||||||||||| ||  |||||| ||  || |||| ||| ||||| ||||||    
T  40023572 agcccaaaaaccaacttaagccaaagaatcgactcccgatctcgaatcaaaagtgatcggtccaccagactttaaaacaaaatcagcagggca-ccctcg 40023670  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| |||||| |||| || | || |||||||||||  | ||||| |||||||| |  ||| ||||||||||||| |||  |||||| |||| | | ||    
T  40023671 cccccggtacactagag-aacaccatatcaagtcaaaacatgattgcagctagacaccaacttccgatctcgaagcaaaaataaccggtccaccggacac 40023769  T
Q  216 cagcacacaatatgtaagatgaaagacatg 245  Q
    ||  ||||||||||||||| || |||||||    
T  40023770 caatacacaatatgtaagacgatagacatg 40023799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 9584053 - 9584173
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcaccc-ctc 114  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||  ||  |||||| ||||| ||||||||| |||||||| |||    
T  9584053 agcccaaaaaccatcttgagacaaagaactgactcccgatctcgaatcaaaagtgatcgatccaccagactttagtatcaaattagcagggcaccctctc 9584152  T
Q  115 gcccccagtacaccagagaaaa 136  Q
     ||||| |||||| ||||||||    
T  9584153 -cccccggtacacaagagaaaa 9584173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 43012452 - 43012372
Alignment:
Q  20 caaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaatta 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  |||||| ||| |||||||||    
T  43012452 caaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcgggccaccagactttagaaccaaatta 43012372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 14194009 - 14193846
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    |||||||| |||||||| ||||||  |||||||||||||||||||||| ||  |||||| ||| ||||||| ||  ||||||||||| | ||| ||||||    
T  14194009 aacttgagccaaagaaccgactcccaatctcgaatcaaaagtgatcggtccgccagactttaggaccaaatcagaagggcacccctcactcccggtacac 14193910  T
Q  128 cagagaa-aaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagc 191  Q
    || |||| | | ||||||| | ||| || | ||||||||||||| | |||||||||| |||||||    
T  14193909 caaagaacacaccaaatcacgccaagcaga-attgtagctagacaccgactcccgatatcgaagc 14193846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 37123463 - 37123289
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||| | || ||||  |||||||||||||||  |||||||||||||||||||||||||  || | | ||| ||||||  |   |||||||||||     
T  37123463 agcccaaaaccaaatttgatccaaagaactgactcccaatctcgaatcaaaagtgatcggcccaccaaaatttaggaccaaaacataagggcacccctct 37123364  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagc 191  Q
    ||  | ||||| |||||||| | ||||||| | |||||||| |||| |||||||| | ||||||||||||||||||    
T  37123363 ccttcggtacatcagagaaacaccaaatcacgccaaacaaa-attgcagctagacaccgactcccgatctcgaagc 37123289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 45398877 - 45398776
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||||| | ||||||| |||||||  ||||||||||||||||||||||| ||  |||||| ||   |||||| ||| ||||||||||||    
T  45398877 agcccaaaaaccaacttaaatcaaagagctgactctcgatctcgaatcaaaagtgatcggtccaccagactttaaatccaaatcagcagggcacccctcg 45398778  T
Q  116 cc 117  Q
    ||    
T  45398777 cc 45398776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 1652886 - 1652948
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | |||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  1652886 agcccaaaaccaaacttgaaccaaagaactaactcctgatctcgaatcaaaagtgatcggccc 1652948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 47945787 - 47945725
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| | |||||||| |||| |||||||||| ||||||||||||||||||||||||||    
T  47945787 agcccaaaatcaaacttgagccaaataactgactcccgatctcgaatcaaaagtgatcggccc 47945725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 225
Target Start/End: Original strand, 14755286 - 14755471
Alignment:
Q  37 caaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaa 136  Q
    ||||||||||||||| ||||| ||||||||||||||||||||  |||||| ||| || |||  |   ||||||||||| ||  | ||||||||||||||     
T  14755286 caaagaactgactcccgatcttgaatcaaaagtgatcggcccaccagactttagcacaaaa--aaaagggcacccctcaccttcggtacaccagagaaac 14755383  T
Q  137 atcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    | |||| |  |  |||| ||||||| |||||||  | |||||||||||||||||| |||  ||||||||||  | ||| ||||||||||    
T  14755384 accaaaacgcgcgaaac-aagattgcagctagataccgactcccgatctcgaagcaaaagtaaccggcccatcggaaatcagcacacaa 14755471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 33143948 - 33144007
Alignment:
Q  16 agcccaaaaaccaa-cttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcg 74  Q
    ||||||||||| || |||||  ||||||||||||||| ||||||||||||||||||||||    
T  33143948 agcccaaaaactaatcttgatccaaagaactgactcccgatctcgaatcaaaagtgatcg 33144007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 47235784 - 47235729
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaa 66  Q
    |||| ||||||||||||||||| ||||||||||| |||||  ||||||||||||||    
T  47235784 cacaaagcccaaaaaccaacttaagtcaaagaaccgactctcgatctcgaatcaaa 47235729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 31482970 - 31482880
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattag 101  Q
    |||| |||||||||| |||||| | |  ||||  ||| ||| ||||||||||||||||||||| ||||  |||||||||| ||||||||||    
T  31482970 cacaaagcccaaaaatcaacttaattttaagatttgattcccgatctcgaatcaaaagtgatccgcccgccagactatagaaccaaattag 31482880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 39021276 - 39021338
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||| |  ||||||  ||||||||||||||| || |||||||||||||||||||||||    
T  39021276 agcccaaaaccagacttgatccaaagaactgactcccgacctcgaatcaaaagtgatcggccc 39021338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 30127332 - 30127283
Alignment:
Q  28 aacttgagtcaa-agaactgactcctgatctcgaatcaaaagtgatcggc 76  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  30127332 aacttgagtcaagagaactgactcccgatctcgaatcaaaagcgatcggc 30127283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 5556639 - 5556580
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagacta 87  Q
    |||||||  ||||||||||||||| |||||||||||||||| ||||| |||  |||||||    
T  5556639 aacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatcgccccaccagacta 5556580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 14879504 - 14879421
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcaccc 111  Q
    |||||||  ||| |||| |||||| ||||||||||||||||||||||||||  |||||| ||| ||| ||| ||  ||||||||    
T  14879504 aacttgatccaacgaacagactcccgatctcgaatcaaaagtgatcggcccaccagactttaggacccaatcagaagggcaccc 14879421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 823447 - 823497
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||| | ||| |||||||||  ||||||||||||||||||||||||||    
T  823447 aacttgaatgaaacaactgactctcgatctcgaatcaaaagtgatcggccc 823497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 4464024 - 4464132
Alignment:
Q  104 gggcacccctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccgg 203  Q
    ||||||||||| ||| | |||||| ||||||| | ||||||| | || |||| ||||| | |||||| | |||||||||||||||||| |||  ||||||    
T  4464024 gggcacccctcaccctcggtacac-agagaaacaccaaatcacgccacacaa-gattgcaactagacaccgactcccgatctcgaagcaaaagtaaccgg 4464121  T
Q  204 cccactgaaaa 214  Q
    ||||| |||||    
T  4464122 cccaccgaaaa 4464132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 31424304 - 31424256
Alignment:
Q  29 acttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcc 77  Q
    |||||| |||||| ||||||||| |||||||||||||||| || |||||    
T  31424304 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgaccggcc 31424256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 35772 - 36075
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||   ||||||||  |||||||||||| |||||||||||    
T  35772 agcccaaaaaccaacttaagtcaaagaa-tgactcccgatctcgaatcaaaagtgatcggcccactagactatataaccaaattagctaggcacccctcg 35870  T
Q  116 cccccagtacaccagagaaaaatcaaa-tcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaa 214  Q
    ||||| |||||||||||||||| |||| | ||||||||||||||||| | |||||||  ||||||||||||||||||||||||||||||||||| ||||     
T  35871 cccccggtacaccagagaaaaaccaaaattaagtcaaacaaagattgcaactagacctcgactcccgatctcgaagccaaatgaaccggcccaccgaaag 35970  T
Q  215 ccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcacccttca 314  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||  |||||||||    
T  35971 ccagcacacaatatgtaagacgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctcaacacaacgtgacactcacccttca 36070  T
Q  315 aactc 319  Q
    |||||    
T  36071 aactc 36075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 3117579 - 3117304
Alignment:
Q  11 cacagagcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacc 110  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  || ||||||  | ||||||||| |||||||    
T  3117579 cacaaagcccaaaaaccaacttgagtcaaagaactgactcccgatcttgaatcaaaagtgatcggcccaccatactatatcaacaaattagcagggcacc 3117480  T
Q  111 cctcgcccccagtacaccagagaaaaatcaaatcaagtcaaa-caaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccact 209  Q
    |||||||||| | |||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||||    
T  3117479 cctcgcccccggaacaccagagaaaaaccaaatcaagtcaaaacaaagattgcaactagaccccgactcccaatctcgaagccaaatgaaccggcccact 3117380  T
Q  210 gaaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaag 285  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||| |||||    
T  3117379 gaaaaccaacacacaatatgtaagatgaaagacatggcatgcaaagattgaacaacaaacaaataaaaagaaaaag 3117304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 16510304 - 16510597
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgccc 118  Q
    |||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||   ||||| ||| ||||||||||| |||||||||| ||||    
T  16510304 ccaaaaaccaacttgagtaaaagaactgactctcaatctcgaatcaaaagtgatcggcccactagactttagaaccaaattagcagggcaccccttgccc 16510403  T
Q  119 ccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccag 218  Q
     | |||||||||||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||||| |||  ||||||||||  ||||||       
T  16510404 tcggtacaccagagaaaaaccatatcaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagcaaaagtaaccggcccaacgaaaac--- 16510500  T
Q  219 cacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctgaacacaacgttgcaagcacccttcaaact 318  Q
        || |||||||||  ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||   || ||||||| ||||||    
T  16510501 ----cattatgtaagacaaaagacatggcatgcgaag-taaaacaacaaacaaatcaaaaggaaaaggctcaacacaacggaacacgcaccctccaaact 16510595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 20701803 - 20702011
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||| | ||||| || ||||||||| ||||| |||||||||||||||||||||||| |  ||| ||| |  ||||||| ||  |||||||||||     
T  20701803 agcccaaaaccaaacttaagccaaagaactaactcccgatctcgaatcaaaagtgatcggcacaccagtctaaatgaccaaatcagaagggcacccctca 20701902  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaac 215  Q
    ||||| |||||||||||||||| ||||||| | ||||||||  ||| |||||||| | || |||||||||| |||| |||  ||||||||||  | ||||    
T  20701903 cccccggtacaccagagaaaaaccaaatcacgccaaacaaa-tttgcagctagacaccgaatcccgatctcaaagcaaaagtaaccggcccatcggaaac 20702001  T
Q  216 cagcacacaa 225  Q
    || |||||||    
T  20702002 catcacacaa 20702011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 15132611 - 15132732
Alignment:
Q  104 gggcacccctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccgg 203  Q
    ||||||||||||||||||||||| ||||||| |  || |||||||||||||  ||||| |||||| | | |||||||||||||||||| |||  ||||||    
T  15132611 gggcacccctcgcccccagtacatcagagaacac-catatcaagtcaaacag-gattgcagctagtcaccgactcccgatctcgaagcaaaagtaaccgg 15132708  T
Q  204 cccactgaaaaccagcacacaata 227  Q
    ||||| |||||||| |||||||||    
T  15132709 cccaccgaaaaccatcacacaata 15132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 32935342 - 32935558
Alignment:
Q  19 ccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgccc 118  Q
    |||||| | |||||||||| ||||||||||||| |||||||||||||||| |||||||||  ||||||  || ||||||| ||  ||| ||||||| |||    
T  32935342 ccaaaatcaaacttgagtccaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagacttcaggaccaaatcagaagggaacccctcaccc 32935441  T
Q  119 ccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccag 218  Q
    ||  | || || ||||| | || | |||| ||||  ||||||| |||||||| |  ||| | |||||| |||| |||  ||||| ||||| | || ||||    
T  32935442 ccgatccatcatagaaacaccataacaagccaaa-gaagattgcagctagacaccaacttctgatctcaaagcaaaagtaaccgacccaccggaatccag 32935540  T
Q  219 cacacaatatgtaagatg 236  Q
    ||||||||||||||||||    
T  32935541 cacacaatatgtaagatg 32935558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 3880623 - 3880791
Alignment:
Q  56 ctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaaatcaaatcaagtcaaacaa 155  Q
    |||||||||||||||||||||||  || ||| ||| ||||||| ||  ||||||| ||| ||| | ||| |||||||||| | ||||||| | ||||| |    
T  3880623 ctcgaatcaaaagtgatcggcccaccaaactttaggaccaaatcagaagggcacctctcaccctcggtaaaccagagaaacaccaaatcatgccaaac-a 3880721  T
Q  156 agattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    |||| | |||||||| | ||||||||||||| |||| |||  ||| ||||||| | ||||||||| ||||    
T  3880722 agatagcagctagacaccgactcccgatctcaaagcaaaagtaactggcccaccggaaaccagcaaacaa 3880791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 26216042 - 26216081
Alignment:
Q  39 aagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  26216042 aagaactgactcccgatctcgaatcaaaagtgatcggccc 26216081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 34105479 - 34105432
Alignment:
Q  31 ttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||||    
T  34105479 ttgagtcaagaaactgactcccgatctcgaatcaaaagtgatcggccc 34105432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 12794173 - 12794133
Alignment:
Q  39 aagaactgactcctgatctcgaatcaaaag-tgatcggccc 78  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  12794173 aagaactgactcctgatctcgaatcaaaagttgatcggccc 12794133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 9224101 - 9224042
Alignment:
Q  37 caaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaa 96  Q
    ||||||||||||||| |||||||||||||||| |||| ||||  |||||| ||| |||||    
T  9224101 caaagaactgactcccgatctcgaatcaaaagcgatcagcccaccagactttaggaccaa 9224042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 13423535 - 13423488
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcgg 75  Q
    |||||||| |||||||| |||||  |||||||||||||||||||||||    
T  13423535 aacttgagccaaagaaccgactctcgatctcgaatcaaaagtgatcgg 13423488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 26534742 - 26534781
Alignment:
Q  39 aagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  26534742 aagaactgactcccaatctcgaatcaaaagtgatcggccc 26534781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 33968625 - 33968670
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatc 73  Q
    |||||||  ||||||||||||||| |||||||||||||||| ||||    
T  33968625 aacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatc 33968670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 32316437 - 32316393
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgat 72  Q
    ||||||| |||||||||| ||| | ||||||||||||||||||||    
T  32316437 aacttgaatcaaagaacttactaccgatctcgaatcaaaagtgat 32316393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 19464 - 19273
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcg 115  Q
    ||||||||| | |||||||| ||||||||||||| | ||||||||||||||||||||||||||  |||||| ||| ||||||| ||  |||||||||||     
T  19464 agcccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttaggaccaaatcagaagggcacccctca 19365  T
Q  116 cccccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggccca 207  Q
    ||    ||| |||||||||| ||||||| ||| ||||  |||| || |||||||| | |||||||||||||||||| |||| ||||| ||||    
T  19364 cctttggtataccagagaaacatcaaattaagccaaaacaagaatgcagctagacaccgactcccgatctcgaagcaaaattaaccgaccca 19273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 36773 - 36580
Alignment:
Q  31 ttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccag 130  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| ||||  |||||| ||| ||||||| ||  ||||||||||| | | | |||||||||    
T  36773 ttgagacaaagaactgactcccgatctcgaatcaaaagtgatcagcccgccagactttaggaccaaatcagaagggcacccctcactctcggtacaccag 36674  T
Q  131 agaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    ||||| | ||||||| | |||||||| |||| |||||||| | |||||| ||||||||| | |||| || |||||||| | |||||| |||||||    
T  36673 agaaacaccaaatcacgccaaacaaa-attgcagctagacaccgactcctgatctcgaatcaaaattaatcggcccaccggaaaccaacacacaa 36580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 42140 - 42329
Alignment:
Q  18 cccaaaaaccaacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcc 117  Q
    ||||||| | |||||||| ||||||||||||| | ||||||||||||||||||||||||||  |||||| ||| || |||| ||  ||||||||||| ||    
T  42140 cccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttaggactaaatcagaagggcacccctcacc 42239  T
Q  118 cccagtacaccagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggccca 207  Q
        ||| |||||||||| ||||||| ||| ||||  |||| || ||||||||   |||||||||||||||||| |||| ||||| ||||    
T  42240 tttggtataccagagaaacatcaaattaagccaaaacaagaatgcagctagacatcgactcccgatctcgaagcaaaattaaccgaccca 42329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 37 - 234
Target Start/End: Original strand, 1038 - 1233
Alignment:
Q  37 caaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacaccagagaaaa 136  Q
    ||||||||||||||| |||||||||||||||| |||||||||  ||||||  |  ||||||| ||  ||| |||||||   |||||| |||||||||||     
T  1038 caaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagacttcatgaccaaatcagaaggg-acccctcattcccagtccaccagagaaac 1136  T
Q  137 atc-aaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaatatgtaaga 234  Q
    | | ||||||| |||||| ||||||| |||||||| |  |||||| |||||||||| |||  || |||||||||  || ||||||||||||||||||||    
T  1137 accaaaatcaa-tcaaac-aagattgcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacacaatatgtaaga 1233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 58196 - 58000
Alignment:
Q  28 aacttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccagtacac 127  Q
    |||||||  |||| || ||||| | ||||| ||||||||||||||||||||  || ||| ||| |||||||  |  |||||||   | |||   ||||||    
T  58196 aacttgatccaaacaattgacttccgatcttgaatcaaaagtgatcggcccaccaaactttaggaccaaatctgaagggcaccatacaccctaggtacac 58097  T
Q  128 cagagaaaaatcaaatcaagtcaaacaaagattgtagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaa 225  Q
    |||||||| | ||||||| | ||||||| ||||| ||||||||   |||||||||||||||||| |||  |||||||| | || ||| ||||||||||    
T  58096 cagagaaacaccaaatcacgccaaacaa-gattgcagctagacaacgactcccgatctcgaagcaaaagtaaccggcctaatggaaatcagcacacaa 58000  T

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Target: scaffold0620 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 3896 - 3849
Alignment:
Q  31 ttgagtcaaagaactgactcctgatctcgaatcaaaagtgatcggccc 78  Q
    |||||||||  |||||||||| ||||||||||||||| ||||||||||    
T  3896 ttgagtcaagaaactgactcccgatctcgaatcaaaattgatcggccc 3849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 5786 - 5751
Alignment:
Q  16 agcccaaaaaccaacttgagtcaaagaactgactcc 51  Q
    ||||||||||||||| ||||||||||||||||||||    
T  5786 agcccaaaaaccaacctgagtcaaagaactgactcc 5751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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