View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5558_low_8 (Length: 415)

Name: NF5558_low_8
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5558_low_8
NF5558_low_8
[»] chr2 (3 HSPs)
chr2 (225-403)||(26661745-26661923)
chr2 (19-126)||(26661539-26661646)
chr2 (37-118)||(6049962-6050043)
[»] chr6 (3 HSPs)
chr6 (226-401)||(21481663-21481840)
chr6 (18-126)||(21481456-21481564)
chr6 (31-126)||(19701203-19701298)
[»] scaffold0586 (1 HSPs)
scaffold0586 (31-126)||(9636-9731)
[»] chr8 (2 HSPs)
chr8 (31-126)||(32717808-32717903)
chr8 (31-126)||(10637691-10637786)
[»] chr1 (2 HSPs)
chr1 (31-126)||(22893846-22893941)
chr1 (37-118)||(44306179-44306259)
[»] chr7 (2 HSPs)
chr7 (31-112)||(13331531-13331612)
chr7 (31-112)||(13342446-13342527)
[»] chr5 (1 HSPs)
chr5 (31-112)||(5672002-5672083)
[»] chr4 (1 HSPs)
chr4 (37-118)||(13893697-13893778)
[»] chr3 (1 HSPs)
chr3 (33-112)||(15761973-15762052)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 225 - 403
Target Start/End: Original strand, 26661745 - 26661923
Alignment:
Q  225 cccactgtttggcaattcttgttttttcccaatcatgaatcaatgcnnnnnnnggttagagacaacttgtttttattaacccaccttcttctaacttttc 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||||     
T  26661745 cccactgtttggcaattcttgttttttcccaatcatgaatcaatgaaaaaaaaggttagagacaacttgtttttattaaaccaccttcttctaacttttt 26661844  T
Q  325 ccaaaatatgttaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagcct 403  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661845 ccaaaatatgctaataaccataacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagcct 26661923  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 26661539 - 26661646
Alignment:
Q  19 cttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatca 118  Q
    |||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661539 cttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattgatatca 26661638  T
Q  119 attctctg 126  Q
    ||||||||    
T  26661639 attctctg 26661646  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 6049962 - 6050043
Alignment:
Q  37 gatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatca 118  Q
    ||||||||||||||  ||||||||||||| |||||| |   |||||||||||||||||||||||||||||||||||||||||    
T  6049962 gatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttggtgattgatatca 6050043  T

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Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 226 - 401
Target Start/End: Original strand, 21481663 - 21481840
Alignment:
Q  226 ccactgtttggcaattcttgtttttt-cccaatcatgaatcaatgcnnnnnnnggtt-agagacaacttgtttttattaacccaccttcttctaactttt 323  Q
    |||||||||||||||||||||||||| |||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||||||||    
T  21481663 ccactgtttggcaattcttgtttttttcccaatcatgaatcaatgcaaaaaaaagtttagagacaacttgtttttattaacccaccttcttctaactttt 21481762  T
Q  324 cccaaaatatgttaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagc 401  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481763 cccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagc 21481840  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 21481456 - 21481564
Alignment:
Q  18 acttgtcaattaggtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatc 117  Q
    ||||| ||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481456 acttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccattactcaacatagatttggtgattgatatc 21481555  T
Q  118 aattctctg 126  Q
    |||||||||    
T  21481556 aattctctg 21481564  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 19701203 - 19701298
Alignment:
Q  31 gtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 126  Q
    ||||| ||||||||| ||||  ||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  19701203 gttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagatttgttgatttatatcatttctctg 19701298  T

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Target: scaffold0586 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 9636 - 9731
Alignment:
Q  31 gtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 126  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  9636 gttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 9731  T

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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 32717903 - 32717808
Alignment:
Q  31 gtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 126  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  32717903 gttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 32717808  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 10637691 - 10637786
Alignment:
Q  31 gtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 126  Q
    ||||| ||||||||||||||  |||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  10637691 gttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 10637786  T

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Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 22893846 - 22893941
Alignment:
Q  31 gtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 126  Q
    ||||| ||||||||||||||  |||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  22893846 gttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 22893941  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 44306179 - 44306259
Alignment:
Q  37 gatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatca 118  Q
    ||||||||||||||  ||||||||||||| |||| | |   |||||||||||||||||||||||||||||| ||||||||||    
T  44306179 gatttcactcttctcttcaaggtaccatcaaatt-cttttcaattcttccattactcaacatagatttggtcattgatatca 44306259  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 13331612 - 13331531
Alignment:
Q  31 gtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 112  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13331612 gtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13331531  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 13342527 - 13342446
Alignment:
Q  31 gtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 112  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13342527 gtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13342446  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 5672083 - 5672002
Alignment:
Q  31 gtttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 112  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5672083 gtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 5672002  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 13893778 - 13893697
Alignment:
Q  37 gatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatca 118  Q
    ||||||||||||||  ||||||||||||| |||||| |   |||||||||||||||||||||||||||||||||||||||||    
T  13893778 gatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttggtgattgatatca 13893697  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 15762052 - 15761973
Alignment:
Q  33 ttttgatttcactcttctgctcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 112  Q
    ||||||||||||| ||||  |||| ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  15762052 ttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagatttggtgattg 15761973  T

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