View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5559-Insertion-1 (Length: 910)
Name: NF5559-Insertion-1
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559-Insertion-1 |
 | |
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| [»] chr4 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 275 - 910
Target Start/End: Complemental strand, 14176986 - 14176344
Alignment:
| Q |
275 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttttc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14176986 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttattcttc |
14176887 |
T |
|
| Q |
375 |
aaggcttttctgccttcaggaagtttcacaggttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatccattggattttat |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176886 |
aaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatccattggattttat |
14176787 |
T |
|
| Q |
475 |
ccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta------tgatgatctct |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14176786 |
ccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctct |
14176687 |
T |
|
| Q |
569 |
gcttgatctcctgagctgagatgttggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccctagggtct |
668 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14176686 |
gcttgatctcctgagatgagatgttgtggattgctctccatcttgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccccagggtct |
14176587 |
T |
|
| Q |
669 |
tcatcaagatatcccccttctgtagcaactcttacaggaggggtggcaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatcgcagaat |
768 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14176586 |
tcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaat |
14176487 |
T |
|
| Q |
769 |
ctgacatagtttcttgctcatgaaacactacatctctgcttctaataattcttctcttctctggatcccataacctatagccaaattcctcatctccata |
868 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14176486 |
ctgacatagtttcttgctcatgaaacactacatctctgcttctaataattcttctcttctctggatcccataacctgtagccaaattcctcatctccata |
14176387 |
T |
|
| Q |
869 |
gcccacaaatatgc-aggaatggctttatcatcaagtttttgt |
910 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14176386 |
gcccacaaatatgcaaggaatggctttatcatcaagtttttgt |
14176344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 275 - 908
Target Start/End: Original strand, 28608889 - 28609530
Alignment:
| Q |
275 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttttc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28608889 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttattcttc |
28608988 |
T |
|
| Q |
375 |
aaggcttttctgccttcaggaagtttcacaggttcataagtatcattttt-ctgcaatgaatccatctcttcttgcattgctttcatccattggatttta |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608989 |
aaggcttttctgccttcaggaagtttcacaagttcataagtatcattttttctgcaatgaatccatctcttcttgcattgctttcatccattggatttta |
28609088 |
T |
|
| Q |
474 |
tccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta------tgatgatctc |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28609089 |
tccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctc |
28609188 |
T |
|
| Q |
568 |
tgcttgatctcctgagctgagatgttggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccctagggtc |
667 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28609189 |
tgcttaatctcctgagatgagatgttgtggattgctctccatcttgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccccagggtc |
28609288 |
T |
|
| Q |
668 |
ttcatcaagatatcccccttctgtagcaactcttacaggaggggtggcaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatcgcagaa |
767 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28609289 |
ttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaa |
28609388 |
T |
|
| Q |
768 |
tctgacatagtttcttgctcatgaaacactacatctctgcttctaataattcttctcttctctggatcccataacctatagccaaattcctcatctccat |
867 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28609389 |
tctgacatagtttcttgcttatgaaacactacatctctgcttctaataattcttctcttctctggatcccataacctgtagccaaattcctcatctccat |
28609488 |
T |
|
| Q |
868 |
agcccacaaatatgc-aggaatggctttatcatcaagttttt |
908 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28609489 |
agcccacaaatatgcaaggaatggctttatcatcaagttttt |
28609530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 275 - 910
Target Start/End: Complemental strand, 12933716 - 12933074
Alignment:
| Q |
275 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttttc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12933716 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttattcttc |
12933617 |
T |
|
| Q |
375 |
aaggcttttctgccttcaggaagtttcacaggttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatccattggattttat |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933616 |
aaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatccattggattttat |
12933517 |
T |
|
| Q |
475 |
ccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta------tgatgatctct |
568 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12933516 |
ctttatgagtttgaacttcatcgaaactgtccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctct |
12933417 |
T |
|
| Q |
569 |
gcttgatctcctgagctgagatgttggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccctagggtct |
668 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12933416 |
gcttgatctcctgagatgagatgttgtggattgctctccatcttgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccccagggtct |
12933317 |
T |
|
| Q |
669 |
tcatcaagatatcccccttctgtagcaactcttacaggaggggtggcaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatcgcagaat |
768 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
12933316 |
tcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagtagaat |
12933217 |
T |
|
| Q |
769 |
ctgacatagtttcttgctcatgaaacactacatctctgcttctaataattcttctcttctctggatcccataacctatagccaaattcctcatctccata |
868 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933216 |
ctgacatagtttcttgctcatgaaacactacatctctgcttctaataattcttctcttctctggatcccataacctatagccaaattcctcatctccata |
12933117 |
T |
|
| Q |
869 |
gcccacaaatatgc-aggaatggctttatcatcaagtttttgt |
910 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12933116 |
gcccacaaatatgcaaggaatggctttatcatcaagtttttgt |
12933074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 275 - 910
Target Start/End: Complemental strand, 15299506 - 15298864
Alignment:
| Q |
275 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttttc |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
15299506 |
tattcctcgcttttgtccaaaaccttttacgactaagagagctttgtatttcactagcttgtcactatctttcttgagcttgaacacccatttattcttt |
15299407 |
T |
|
| Q |
375 |
aaggcttttctgccttcaggaagtttcacaggttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttcatccattggattttat |
474 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15299406 |
aaggcttttctgatttcaggaagcttcacaagttcataagtatcatttttctgcaaggaatccatctcttcttacattgctttcatccattggattttat |
15299307 |
T |
|
| Q |
475 |
ccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta------tgatgatctct |
568 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15299306 |
ccttatgagtttgaacttcatcaaaacttttcggctccccctcaacagtgatgagaatgtactccaaactagggtacctggtagatggatgatgatctct |
15299207 |
T |
|
| Q |
569 |
gcttgatctcctgagctgagatgttggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccctagggtct |
668 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
15299206 |
gcttgatctcttgagctgagatgttgggcattgctctccatcctgaacatcttcctcatcaccatcttcaactactaactcaccattaaccccagggtct |
15299107 |
T |
|
| Q |
669 |
tcatcaagatatcccccttctgtagcaactcttacaggaggggtggcaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatcgcagaat |
768 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
15299106 |
tcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaactgtaagatcaaccttaccataacgtttaggtgtttctggaatagcagaat |
15299007 |
T |
|
| Q |
769 |
ctgacatagtttcttgctcatgaaacactacatctctgcttctaataattcttctcttctctggatcccataacctatagccaaattcctcatctccata |
868 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15299006 |
ctgacatagtttcttgctcatgaaacactacatctctgcttctaataattcttctcttctctggatcccataacctgtagccaaattcctcatctccata |
15298907 |
T |
|
| Q |
869 |
gcccacaaatatgc-aggaatggctttatcatcaagtttttgt |
910 |
Q |
| |
|
|||| || |||||| |||||||||||||||||||||||||||| |
|
|
| T |
15298906 |
gcccgcacatatgcaaggaatggctttatcatcaagtttttgt |
15298864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 595 - 908
Target Start/End: Original strand, 38994875 - 38995189
Alignment:
| Q |
595 |
gggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagc |
694 |
Q |
| |
|
|||||||||||||||||| | | ||| |||||||||||||||| | ||||||||||||||||||||||| || |||||||| |||||||||| | || |
|
|
| T |
38994875 |
gggattgctctccatcctatcctttttcgtcatcaccatcttcaattgttggctcaccatcaaccctagggttttaatcaagatctcccccttctttggc |
38994974 |
T |
|
| Q |
695 |
aactcttacaggaggggtggcaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatcgcagaatctgacatagtttcttgctcatgaaac |
794 |
Q |
| |
|
|||||||| |||||| |||| |||||||| |||||||||||| | ||||||||||| |||| | | ||| || |||||||||||||||||||||| |
|
|
| T |
38994975 |
aactcttataggaggagtggttagtgtaaggtcaaccttaccaccgtgcttaggtgtttcaggaatagta-aatttgtcatagtttcttgctcatgaaac |
38995073 |
T |
|
| Q |
795 |
actacatctctgcttctaataattcttctcttctct-ggatcccataacctatagccaaattcctcatctccatagcccacaaatatgc-aggaatggct |
892 |
Q |
| |
|
| ||| ||| | |||||||| ||||||||||| | | |||||||||||| | |||||||||||||||||||||| ||||||||||| | |||||||||| |
|
|
| T |
38995074 |
aatacgtctttacttctaatgattcttctcttattttggatcccataacgtgcagccaaattcctcatctccataccccacaaatatacaaggaatggct |
38995173 |
T |
|
| Q |
893 |
ttatcatcaagttttt |
908 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38995174 |
ttatcatcaagttttt |
38995189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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