View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5559-Insertion-2 (Length: 610)
Name: NF5559-Insertion-2
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 178 - 610
Target Start/End: Original strand, 49693841 - 49694274
Alignment:
| Q |
178 |
ctataaatctattata-atagagtgagagcataacagagtctggggatggcgaagttgcagagattcaagctcttcgcgacacagtgcggtgttgaaaag |
276 |
Q |
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| T |
49693841 |
ctataaatctattatttacagggtgagagcataacagagtctagggatggcgaagttgcagagattcaagctcttcgcgacacaatgcggtgttgaaaag |
49693940 |
T |
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| Q |
277 |
agcccaacgttaagcccaagaacaagcccgctgattcagcttccaaggcccaaaacaacactccgtactctacttgggctaagcctgacgcgaccgcaac |
376 |
Q |
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| T |
49693941 |
agccctacgttaagcccaagaacaagcccgctgattcagcttccaaggcccaaaacaacactccgtactctacttgggctaagcctgacgcgaccgcaac |
49694040 |
T |
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| Q |
377 |
gaaggcagggacacgtatcggtgttagagaagaaggagaaagattcgatgcggagaagctcactcaaggatctgtttgtgtcgtcgccatcgagagagga |
476 |
Q |
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| T |
49694041 |
gaaggcagggacacgtgtcggtgttggagaagaaggataaagattcgatgcggagaagctcattgaaggatctgtttgtgtcctcgccatcgagagagga |
49694140 |
T |
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| Q |
477 |
agatgaagaaggacatgctagttctccgatgttgggaaacatgggtctttttcggtctgatgataccggtttaaataacccggtttggaccggttttcgt |
576 |
Q |
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| T |
49694141 |
agatgaagaaggacatgctagttctccgatgttgggaaacatgggtctttttcggtctgatgataccggtttaaataacccggtttggaccgcttttcgt |
49694240 |
T |
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| Q |
577 |
tgtaggtctttgctgaaaaggaaagcttggcgcc |
610 |
Q |
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| T |
49694241 |
tgtaggtctttgctgaaaaggaaagcttggcgcc |
49694274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 49693716 - 49693790
Alignment:
| Q |
18 |
attccattctatggtcatcggtcataaagaaaaagtaatgaagatgttggaggcattcccaaaatagatcccatg |
92 |
Q |
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| T |
49693716 |
attccattatatggtcatcggtcataaagaaaaagtaatgaagatgttggaggcattcccaaaatagatcccatg |
49693790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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