View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5559-Insertion-4 (Length: 325)
Name: NF5559-Insertion-4
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559-Insertion-4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 47919957 - 47920253
Alignment:
| Q |
8 |
gatagcataccttaatgttggaatctatccattcactttccctcctctctggacagttcattgtccaaacactcaatgtcaactttttggtttacctctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47919957 |
gatagcataccttaatgttggaatctatccattcactttccctcctctctggacagttcattgta---------------------ttggtttacctctt |
47920035 |
T |
|
| Q |
108 |
ggctattaatgtgactttgtgcattcttgctacgcttgaaattaagtggtcaggaattgagctggaagaatggtggagaaaacatctagctgccgtgctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47920036 |
ggctattaatgtgactttgtgcattcttgctatgcttgaaattaagtggtcaggaattgagctggaagaatggtggagaaaacatctagctgccgtgctt |
47920135 |
T |
|
| Q |
208 |
caaggtttactcaaagtcattgcaggcgttgaaatatcattcaccttgacttcaaaatcttgcggtgatgatgttgacgacgagtttgctgatctatata |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47920136 |
caaggtttactcaaagtcattgcaggcgttgaaatctcattcaccttgacttcaaaatctggcggtgatgatgttgacgacgagtttgctgatctatata |
47920235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 41 - 188
Target Start/End: Complemental strand, 29917174 - 29917027
Alignment:
| Q |
41 |
cactttccctcctctctggacagttcattgtccaaacactcaatgtcaactttttggtttacctcttggctattaatgtgactttgtgcattcttgctac |
140 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29917174 |
cactctccctcttctctggacagttcattgtccaaacactcaatgtcacttttttggcttacctcttggctattactgtgactttgtgcattcttgctgt |
29917075 |
T |
|
| Q |
141 |
gcttgaaattaagtggtcaggaattgagctggaagaatggtggagaaa |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29917074 |
gcttgaaattaagtggtcaggaattgagctggaagaatggtggagaaa |
29917027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 189 - 325
Target Start/End: Complemental strand, 29916993 - 29916857
Alignment:
| Q |
189 |
acatctagctgccgtgcttcaaggtttactcaaagtcattgcaggcgttgaaatatcattcaccttgacttcaaaatcttgcggtgatgatgttgacgac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29916993 |
acatctagctgccgtgcttcaaggtttactcaaagttgttgcaggcattgaaatctcattcacattgacttcaaaatctggcggtgatgatgttgacgac |
29916894 |
T |
|
| Q |
289 |
gagtttgctgatctatatattgtcaaatggtcatccc |
325 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
29916893 |
gagtatgctgatctgtatattgtcaaatggtcatccc |
29916857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 29917245 - 29917208
Alignment:
| Q |
8 |
gatagcataccttaatgttggaatctatccattcactt |
45 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29917245 |
gatagcataccttaatgttggaatttatccattcactt |
29917208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University