View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5559-Insertion-6 (Length: 150)

Name: NF5559-Insertion-6
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5559-Insertion-6
NF5559-Insertion-6
[»] chr7 (3 HSPs)
chr7 (8-150)||(44871845-44871987)
chr7 (52-150)||(44872090-44872188)
chr7 (9-150)||(44871978-44872122)
[»] chr3 (6 HSPs)
chr3 (9-150)||(47527766-47527907)
chr3 (12-150)||(47527898-47528036)
chr3 (39-123)||(47527661-47527745)
chr3 (51-150)||(47527430-47527529)
chr3 (15-123)||(47522196-47522304)
chr3 (65-116)||(47527599-47527650)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 1e-70; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 44871845 - 44871987
Alignment:
Q  8 ctcctcagattctctgggttgctctttgaaatgtaattgagaagaataaattgatgctgctgcttcttccttggattctttcagtcgctctttcgactgt 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44871845 ctcctcagattctctgggttgctctttcaaatgtaattgagaagaataaattgatgctgctgcttcttccttggattctttcagtctctctttcgactgt 44871944  T
Q  108 aatggagacaaagaaaatgctctagctactgcttcctcggatt 150  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44871945 aatggagacaaagaaaatgctctagctactgcttcctcggatt 44871987  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 44872090 - 44872188
Alignment:
Q  52 aataaattgatgctgctgcttcttccttggattctttcagtcgctctttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggatt 150  Q
    |||||||||||| |||||||  ||||| |||||||  | ||||||| ||||||||||||| |||||||| ||||||||| ||||||||||||| |||||    
T  44872090 aataaattgatgttgctgctgtttcctcggattctcccggtcgctccttcgactgtaatgcagacaaagtaaatgctcttgctactgcttccttggatt 44872188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 44871978 - 44872122
Alignment:
Q  9 tcctcagattctctgggttgctctttgaaatgtaattgagaagaataaattgatgctgctg---cttcttccttggattctttcagtcgctctttcgact 105  Q
    ||||| |||||||| |||||| |||| || |||||| |||||||| |||||| || || ||   || |||||| ||||| | ||||| ||||||||||||    
T  44871978 tcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctctttcgact 44872077  T
Q  106 gtaatggagacaaagaaaatgctctagctactgcttcctcggatt 150  Q
    |||| |||| |||| ||| || | | ||| ||| |||||||||||    
T  44872078 gtaaaggaggcaaataaattgatgttgctgctgtttcctcggatt 44872122  T

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Target: chr3 (Bit Score: 58; Significance: 9e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 47527907 - 47527766
Alignment:
Q  9 tcctcagattctctgggttgctctttgaaatgtaattgagaagaataaattgatgctgctgcttcttccttggattctttcagtcgctctttcgactgta 108  Q
    |||||||||||||| ||||||||||| || |||||| |||| ||| |||||| || ||||||| |||| |  ||| || ||||||||||  ||||||| |    
T  47527907 tcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctcagtcgctcaatcgactgaa 47527808  T
Q  109 atggagacaaagaaaatgctctagctactgcttcctcggatt 150  Q
    ||||||||||||||||| |||| ||||||| | |||||||||    
T  47527807 atggagacaaagaaaatcctcttgctactgatacctcggatt 47527766  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 47528036 - 47527898
Alignment:
Q  12 tcagattctctgggttgctctttgaaatgtaattgagaagaataaattgatgctgctgcttcttccttggattctttcagtcgctctttcgactgtaatg 111  Q
    |||||||||||   ||||||||| |  |||||| || | ||||||||| ||| ||||||| |||||| | |||||  |||||||||||||||||||||||    
T  47528036 tcagattctctccattgctcttttatctgtaatggaaacgaataaattaatgttgctgctgcttcctcgcattctcgcagtcgctctttcgactgtaatg 47527937  T
Q  112 gagacaaagaaaatgctctagctactgcttcctcggatt 150  Q
    |||||||  ||||||||||  ||| ||||||||| ||||    
T  47527936 gagacaagtaaaatgctcttactaatgcttcctcagatt 47527898  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 47527745 - 47527661
Alignment:
Q  39 tgtaattgagaagaataaattgatgctgctgcttcttccttggattctttcagtcgctctttcgactgtaatggagacaaagaaa 123  Q
    |||||| |||| ||||| ||||||  ||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  47527745 tgtaatggagatgaatatattgatattgctgctgcttcctcagattctctcagtcgctctttcgactgtaatggagacaaagaaa 47527661  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 47527529 - 47527430
Alignment:
Q  51 gaataaattgatgctgctgcttcttccttggattctttcagtcgctctttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggatt 150  Q
    ||||||||||||| |||||||  |||||  |||| | || |||||||  ||| ||||| | |||| |||||||||||||||||| | |||||||||||||    
T  47527529 gaataaattgatgttgctgctgtttcctcagattttctctgtcgctccgtcggctgtagttgagaaaaagaaaatgctctagctccagcttcctcggatt 47527430  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 47522304 - 47522196
Alignment:
Q  15 gattctctgggttgctctttgaaatgtaattgagaagaataaattgatgctgctgcttcttccttggattctttcagtcgctctttcgactgtaatggag 114  Q
    |||||||| ||| |||||||  | |||||  |||| ||||||||||||  |||||||  |||||  |||||| || ||| || ||||||||| |||||||    
T  47522304 gattctctcggtagctctttcgattgtaaaggagacgaataaattgatattgctgctgtttcctcagattctctcggtctctttttcgactgcaatggag 47522205  T
Q  115 acaaagaaa 123  Q
    ||| |||||    
T  47522204 acagagaaa 47522196  T

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Target: chr3; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 47527650 - 47527599
Alignment:
Q  65 tgctgcttcttccttggattctttcagtcgctctttcgactgtaatggagac 116  Q
    ||||||| |||||  ||||||| ||||| |||| ||||||||||||||||||    
T  47527650 tgctgctgcttccacggattctctcagttgctcattcgactgtaatggagac 47527599  T

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