View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5559-Insertion-8 (Length: 64)
Name: NF5559-Insertion-8
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559-Insertion-8 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 53; Significance: 3e-22; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-22
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 2329923 - 2329979
Alignment:
| Q |
8 |
ccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactcctccg |
64 |
Q |
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| T |
2329923 |
ccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcctccg |
2329979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 2326208 - 2326256
Alignment:
| Q |
8 |
ccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
56 |
Q |
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| T |
2326208 |
ccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaa |
2326256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 2350223 - 2350274
Alignment:
| Q |
8 |
ccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
59 |
Q |
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|||||||||||||||||| | |||| |||||||||||||||||||||||||| |
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| T |
2350223 |
ccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactc |
2350274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 2302653 - 2302704
Alignment:
| Q |
8 |
ccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
59 |
Q |
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||||||||||| |||| ||||||||||||||| | ||||||||||||||| |
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| T |
2302653 |
ccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaactc |
2302704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 2309365 - 2309416
Alignment:
| Q |
8 |
ccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
59 |
Q |
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| T |
2309365 |
ccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactc |
2309416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 2320354 - 2320405
Alignment:
| Q |
8 |
ccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
59 |
Q |
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||||||||||| ||||| ||||||||| ||||| | ||||||||||||||| |
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| T |
2320354 |
ccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactc |
2320405 |
T |
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