View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5559_high_5 (Length: 357)
Name: NF5559_high_5
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 341
Target Start/End: Original strand, 48099940 - 48100270
Alignment:
| Q |
11 |
cataggaaacataccttgttttcactttttccttcttacattttttgtatgcttttgggcggcggaaattatttcttattgcatttccattcaaccaatt |
110 |
Q |
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| T |
48099940 |
cataggaaacataccttgttttcactttttccttcttacattttttgtatgcttttgggcggcggaaattatttcttattgcatttccattcaaccaatt |
48100039 |
T |
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| Q |
111 |
tcacatgtcatgcactttcaaaactagaaaacatgcaacttgaaacaattcatttcaattaaataccaccaaaaagttcattctacctaaaattcactct |
210 |
Q |
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| T |
48100040 |
tcacatgtcatgcactttcaaaactagaaaacatgcaacttgaaacaattcatttcaattaaataccaccaaaaagttcattctacctaaaattcactct |
48100139 |
T |
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| Q |
211 |
tttattgtttnnnnnnnngtggctataaaaaggcat-gaattgatgtatccaatacacatattgaaaaaggttaattcttttcaactaactcaaggcaaa |
309 |
Q |
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| T |
48100140 |
tttattgttt-aaaaaaagtggctataaaaaggcatcaaattgatgtatccaatacacatattgaaaaaggttaattcttttcaactaactcaaggcaaa |
48100238 |
T |
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| Q |
310 |
tggcaattccttcatcttttgttcctttgatg |
341 |
Q |
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| T |
48100239 |
tggcaaatccttcatcttttgttcctttgatg |
48100270 |
T |
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