View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5559_high_6 (Length: 296)
Name: NF5559_high_6
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 62 - 278
Target Start/End: Complemental strand, 39802108 - 39801892
Alignment:
| Q |
62 |
actcttaatatatacctttgggacggagggtttgggagttatctgctgcttatgtgaaagacaaactaggcggaactaaaaatcgacgtctaattacata |
161 |
Q |
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| T |
39802108 |
actcttaatatatacctttgggacggagggtttgggagttatctgctgcttatgtgaaagacaaactaggcggaactaaaaatcgacgtctaattacata |
39802009 |
T |
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| Q |
162 |
aaagtattggaatatatgagagggtagtcttaatcatcatcaattgaatttgtaaagaaaatttcctggaatattaaatgaatgnnnnnnnggtaaaaga |
261 |
Q |
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| T |
39802008 |
aaagtattggaatatatgagagggtagtcttaatcatcatcaattgaatttgtaaagaaaatttcctggaatattaaatgaatgtttttttggtacaaga |
39801909 |
T |
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| Q |
262 |
attctaaatgaatttga |
278 |
Q |
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| T |
39801908 |
attctaaatgaatttga |
39801892 |
T |
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