View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5559_low_2 (Length: 482)
Name: NF5559_low_2
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 27714474 - 27714000
Alignment:
| Q |
1 |
aaggcttgtagatcaagccgacgactaatgcaacatcttagaacttcaaagctcaagtgttgtgtttgttaaacgtaatttaaatgttgtagctcgtagc |
100 |
Q |
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| T |
27714474 |
aaggcttgtagatcaagccgacgactaatgcaacatcttagaacttcaaagctcaagtgttgtgtttgttaaacgtaatttaaatgttgtagctcgtagc |
27714375 |
T |
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| Q |
101 |
ttagttaaattgtcaatactggctagttgtagaacttggttgcgggttgggacttggtacaactctgtctaactagtctgctgtaattgctacctctgtt |
200 |
Q |
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| T |
27714374 |
ttagttaaattgtcaatactggctggttgtagaacttggttgcgggttgggacttggtacaactcggtctaactattctgctgtaattgctacctctgtt |
27714275 |
T |
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| Q |
201 |
tcttaatgcaattgtgtttcacttatnnnnnnnnnnnnnnnnnnnctatagtttttggacataggatgattatgcaaacccaatcatgttaatttgtaca |
300 |
Q |
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| T |
27714274 |
tcttaatgcaattgtgtttcacttataaaaataaaaaataaaaaactatagtttttggacatagggtgattatgcaaacccaatcatgttggtttgtaaa |
27714175 |
T |
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| Q |
301 |
ttcattgggagtgttggaatgccggttcgtcaaataagaagattaagaggggtctaaggcttatttggcacgcc---------acaatttggaaagctag |
391 |
Q |
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| T |
27714174 |
ttcattgggagtgttggaatgccggttcgtcaaataagaagattaagagggttctaaggcttatttggcacaccgcaatttggacaatttggaaagctag |
27714075 |
T |
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| Q |
392 |
aaatgataaaatcttcaatgctaaggattcggaggtgatggaattggtggatgaaattaaggtgttgtcttggtg |
466 |
Q |
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| T |
27714074 |
aaatgataaaatcttcaatgctaaggattcggaggtgatggaattggtggatgaaattaagatgttgtcttggtg |
27714000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 27707061 - 27706868
Alignment:
| Q |
38 |
ttagaacttcaaagctcaagtgttgtgtttgttaaacgtaatttaaatgttgtagctcgtagcttagttaaattgtcaatactgg------ctagttgta |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||||||||||||||||| || || ||| |
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| T |
27707061 |
ttagaacttcaaagctcaagtgttgtgtttgttaaacgtgatttatatgttgtagctcatagtttagttaaattgtcaatactggccggtactggtagta |
27706962 |
T |
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| Q |
132 |
gaacttggttgcgggttggg---acttggtacaactctgtctaactagtctgctgtaattgctacctctgtttcttaatgcaattgtgtttcactt |
224 |
Q |
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| T |
27706961 |
gaacatggttgggggttgggacaactcagtctaacac--tcaaactattctactgtaattgctacctctgtttcttaatgcaattgtgtttcactt |
27706868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 27706850 - 27706799
Alignment:
| Q |
246 |
ctatagtttttggacataggatgattatgcaaacccaatcatgttaatttgt |
297 |
Q |
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| T |
27706850 |
ctatagttgttggacgtaggatgattatgcaaacgcaatcatgttgatttgt |
27706799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 6495411 - 6495481
Alignment:
| Q |
381 |
tggaaagctagaaatgataaaatcttcaatgctaaggattcggaggtgatggaattggtggatgaaattaa |
451 |
Q |
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| T |
6495411 |
tggaatgctaggaatgataaaattttcaatgctaaggagacgggggtgatggagttggtggatgatattaa |
6495481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 464
Target Start/End: Complemental strand, 30683220 - 30683192
Alignment:
| Q |
436 |
tggtggatgaaattaaggtgttgtcttgg |
464 |
Q |
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| T |
30683220 |
tggtggatgaaattaaggtgttgtcttgg |
30683192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 393 - 460
Target Start/End: Complemental strand, 30421857 - 30421790
Alignment:
| Q |
393 |
aatgataaaatcttcaatgctaaggattcggaggtgatggaattggtggatgaaattaaggtgttgtc |
460 |
Q |
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| T |
30421857 |
aatgataaaattttcaatgctaaggagacgggggtgatggagttggtggatgatattaaagttttgtc |
30421790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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