View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5559_low_3 (Length: 446)
Name: NF5559_low_3
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 225 - 432
Target Start/End: Original strand, 32189691 - 32189900
Alignment:
| Q |
225 |
tatatatgaatacaattacataaaaatgaatcgagtaataaattttcatgtaaaaat--tgtttggatccaaagatatattaaatcctagtttttagtta |
322 |
Q |
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| T |
32189691 |
tatatatgaataaaattacataaaaatgaatcgagtaataaattttcatgtaaaaatcatgtttagatccaaagatataataaatcctagtttttagtta |
32189790 |
T |
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| Q |
323 |
aaattaattctaaagataaaattaattttactcataaacaaccaaacaactcaaaatcaattttacacttttaaaaacaatttgatggccatggtccaat |
422 |
Q |
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| T |
32189791 |
aaattaattctaaagataaaattaattttactcataaacaaccaaacaactcaaaatcaattttacacttttaaaagcaatttgatggtcatggtccaat |
32189890 |
T |
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| Q |
423 |
ccactcacat |
432 |
Q |
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|||||||||| |
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| T |
32189891 |
ccactcacat |
32189900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 32189485 - 32189635
Alignment:
| Q |
17 |
catcaaagtattaaaaccaaaatgcatattagcatgctgactcaattcacctataaaaaagtttgaaataattgaattagaccagagggaaagtgttgga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32189485 |
catcaaagtattaaaaccaaaatgcatattagcatgctgactcaattcacctataaaaaagtttgaaataattgaattaaaccagagggaaagtgttgga |
32189584 |
T |
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| Q |
117 |
tgaaactctacattagaaactggttaaaggtttatctgattttacggtaac |
167 |
Q |
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| T |
32189585 |
tgaaactctacattagaaactggttaaaggtttatctgattttacggtaac |
32189635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 18228173 - 18228105
Alignment:
| Q |
321 |
taaaattaattctaaagataaaattaattttactcataaacaaccaaacaactcaaaatcaattttaca |
389 |
Q |
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| T |
18228173 |
taaaatcaattctaaagtcaaaatcaattttacttaaaaacaaccaaacatttgaaaatcaattctaca |
18228105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 398
Target Start/End: Complemental strand, 36180211 - 36180132
Alignment:
| Q |
318 |
agttaaaattaattctaaagataaaattaattttactcataaacaaccaaacaactcaaaatcaattttacacttttaaaa |
398 |
Q |
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| T |
36180211 |
agttaaaatcaataatgaagataaaattaattttactcaagaataa-caaacacgtcaaaatcaattttacatttttaaaa |
36180132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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