View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5559_low_4 (Length: 440)
Name: NF5559_low_4
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 426
Target Start/End: Original strand, 39863665 - 39864071
Alignment:
| Q |
20 |
gaacagaatgttgaaattgtaatgaaatggtattcccttcggataaaactttgtcgattgcagcaataacatcctcatctatcatagcatcaatatcttt |
119 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39863665 |
gaacagaatgctgaaattgtaatgaaatggtattcccttcggataaaactttgtcgattgcagcaataacatcctcacctatcatagcatcaatatcttt |
39863764 |
T |
|
| Q |
120 |
caagtctaggctgattttttgtgaagagctggctttgctggaaccttcattgtgagtggtctctatgtccactttttccggttgacctttagcgcttttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863765 |
caagtctaggctgattttttgtgaagagctggctttgctggaaccttcattgtgagtggtctctatgtccactttttccggttgacctttagcgcttttg |
39863864 |
T |
|
| Q |
220 |
tcaacattggtttgttgcagcaatgatattctcaactcctcaagtatcatatcattaattttttcaaagtctatgccgacgaattttgaattgttggctt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863865 |
tcaacattggtttgttgcagcaatgatattctcaactcctcaagtatcatatcattaattttttcaaagtctatgccgacgaattttgaattgttggctt |
39863964 |
T |
|
| Q |
320 |
tgctggtaccttcatcattagtggtctctacgtccacttttgactgttgagcttcatttttatcaacatttgtttcttcggctaaactgtttttgttttg |
419 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863965 |
tgctggtaccttcatcattagtggtctctaagtccacttttgactgttgagcttcatttttatcaacatttgtttcttcggctaaactgtttttgttttg |
39864064 |
T |
|
| Q |
420 |
ctcctcc |
426 |
Q |
| |
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||||||| |
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| T |
39864065 |
ctcctcc |
39864071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 39897070 - 39897150
Alignment:
| Q |
53 |
tcccttcggataaaactttgtcgattgcagcaataacatcctcatctatcatagcatcaatatctttcaagtctaggctga |
133 |
Q |
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||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| ||||| |
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| T |
39897070 |
tcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagcatcaatttcttccaagtctatgctga |
39897150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 39856463 - 39856638
Alignment:
| Q |
20 |
gaacagaatgttgaaattgtaatgaaatggtattcccttcggataaaactttgtcgattgcagcaataacatcctcatctatcatagcatcaatatcttt |
119 |
Q |
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|||||||||| ||| ||| ||| |||| ||| ||||||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||||||||| ||||| |
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| T |
39856463 |
gaacagaatggtgagattttaaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcatcaatttcttt |
39856562 |
T |
|
| Q |
120 |
caagtctaggctgattttttgtgaagagctggctttgctggaaccttcattgtgagtggtctctatgtccactttt |
195 |
Q |
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||||||| ||||| || | ||| | |||||||| ||| |||||||| | |||||||||||| ||||||||| |
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| T |
39856563 |
caagtctttgctgacaaattttaaagtgttggctttgttggtaccttcatcataagtggtctctatatccactttt |
39856638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 375
Target Start/End: Original strand, 39856542 - 39856653
Alignment:
| Q |
264 |
tatcatatcattaattttttcaaagtctatgccgacgaattttgaattgttggctttgctggtaccttcatcattagtggtctctacgtccacttttgac |
363 |
Q |
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||||||| ||| ||||| || |||||| ||| ||| |||||| || ||||||||||| ||||||||||||||| ||||||||||| |||||||||||| |
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| T |
39856542 |
tatcatagcatcaatttctttcaagtctttgctgacaaattttaaagtgttggctttgttggtaccttcatcataagtggtctctatatccacttttgac |
39856641 |
T |
|
| Q |
364 |
tgttgagcttca |
375 |
Q |
| |
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|||||||||||| |
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| T |
39856642 |
tgttgagcttca |
39856653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 38980477 - 38980373
Alignment:
| Q |
22 |
acagaatgttgaaattgtaatgaaatggtattcccttcggataaaactttgtcgattgcagcaataacatcctcatctatcatagcatcaatatctttca |
121 |
Q |
| |
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|||||||| ||| ||| || ||||||||| ||||||| ||||||||| ||| ||| | |||||| ||||||||||||||||||||||||| ||||||| |
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| T |
38980477 |
acagaatgctgagattttacggaaatggtaatcccttctgataaaactctgttgatagaagcaatgacatcctcatctatcatagcatcaacttctttca |
38980378 |
T |
|
| Q |
122 |
agtct |
126 |
Q |
| |
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||||| |
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| T |
38980377 |
agtct |
38980373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 39737600 - 39737483
Alignment:
| Q |
53 |
tcccttcggataaaactttgtcgattgcagcaataacatcctcatctatcatagcatcaatatctttcaagtctaggctgattttttgtgaagagctggc |
152 |
Q |
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|
||||||| ||||||||| |||| ||||| ||||| ||||||||||||| ||||||||||| |||| |||||| ||||| | || ||||| | ||| |
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| T |
39737600 |
tcccttccgataaaactctgtcaattgccgcaatgacatcctcatctaccatagcatcaaattcttcagagtctatgctgactaattttgaagtgttgga |
39737501 |
T |
|
| Q |
153 |
tttgctggaaccttcatt |
170 |
Q |
| |
|
|||||||| ||||||||| |
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| T |
39737500 |
tttgctggtaccttcatt |
39737483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 39846749 - 39846812
Alignment:
| Q |
54 |
cccttcggataaaactttgtcgattgcagcaataacatcctcatctatcatagcatcaatatct |
117 |
Q |
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|||||| |||| |||||||||||||||| ||||||||||| |||||| |||| |||||| |||| |
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| T |
39846749 |
cccttctgatataactttgtcgattgcaccaataacatccacatctaccatatcatcaagatct |
39846812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 39737536 - 39737484
Alignment:
| Q |
282 |
ttcaaagtctatgccgacgaattttgaattgttggctttgctggtaccttcat |
334 |
Q |
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|||| ||||||||| ||| ||||||||| |||||| ||||||||||||||||| |
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| T |
39737536 |
ttcagagtctatgctgactaattttgaagtgttggatttgctggtaccttcat |
39737484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 39737477 - 39737405
Alignment:
| Q |
356 |
cttttgactgttgagcttca---tttttatcaacatttgtttcttcggctaaactgtttttgttttgctcctc |
425 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||| || | | |||| ||||| |||||| |
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|
| T |
39737477 |
cttttgactgttgagcttcaatgtttttgtcaacatttgtttcttcggatataatattttcgtttttctcctc |
39737405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 39862082 - 39862049
Alignment:
| Q |
84 |
aataacatcctcatctatcatagcatcaatatct |
117 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
39862082 |
aataacatcctcatctatcatagtatcaatatct |
39862049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 32826978 - 32827043
Alignment:
| Q |
53 |
tcccttcggataaaactttgtcgattgcagcaataacatcctcatctatcatagcatcaatatctt |
118 |
Q |
| |
|
||||||| |||||||| |||| |||||||||| ||| ||||||||||||||||||||||| |||| |
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|
| T |
32826978 |
tcccttctaataaaactctgtcaattgcagcaacaacgtcctcatctatcatagcatcaatttctt |
32827043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 32827024 - 32827097
Alignment:
| Q |
264 |
tatcatatcattaattttttcaaagtctatgccgacgaattttgaattgttggctttgctggtaccttcatcat |
337 |
Q |
| |
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||||||| ||| ||||| |||||||||| ||| ||| || |||||| ||||| ||||||||||||||| ||||| |
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| T |
32827024 |
tatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttgctggtaccttaatcat |
32827097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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