View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5559_low_6 (Length: 333)
Name: NF5559_low_6
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 102 - 315
Target Start/End: Complemental strand, 43800159 - 43799946
Alignment:
| Q |
102 |
attttaggtttaatttcgttcggttcaagttgcaaccttggtattattgcagttgtttttcctttttatttctccacattatttaatcaattatgctaca |
201 |
Q |
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| T |
43800159 |
attttaagtttaatttcgttcggttcaagttgcaaccttggtattattgcagttgtttttcctttttatttctccacattatttaatcaattatgctaca |
43800060 |
T |
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| Q |
202 |
ctattatatttaatcgatccattgatgctaattgtttctattacagctgtggttaattagatacactactataatagttgaagttcatgtttagattgaa |
301 |
Q |
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| T |
43800059 |
ctattatatttaatcgatccattgatgctaattgtttctattacagctgtggttaattagatacactactataatagtttaagttcatgtttagattgaa |
43799960 |
T |
|
| Q |
302 |
taggattaagctaa |
315 |
Q |
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|||||||||||||| |
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| T |
43799959 |
taggattaagctaa |
43799946 |
T |
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