View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5559_low_8 (Length: 252)
Name: NF5559_low_8
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 38002699 - 38002913
Alignment:
| Q |
8 |
gatcacagagagagtatttaatgccataaaaaatttaatttccaccaaccgctcctcagaaacacaaattactaaacgtgaatgtatccaaatataaatg |
107 |
Q |
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| T |
38002699 |
gatcacagagacagtatttaatgccataaaaaatttaatttccaccaaccgctcctcagaaacacaaattactaaacgtgaatgtatctaaacataaatg |
38002798 |
T |
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| Q |
108 |
actttatctacaattaacttttaa---------------tcaaaatcaattcttcgcaaaaagagaactaaacatttcattagcaaatcccaattcctaa |
192 |
Q |
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| T |
38002799 |
actttatctacaattaacttttaatcaaaatcaattcactcaaaatcaattcttcgc-aaaagagaactaaacatttcattagcaaatcccaattcctaa |
38002897 |
T |
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| Q |
193 |
tctaatgaagagaaac |
208 |
Q |
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|||||||||||||||| |
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| T |
38002898 |
tctaatgaagagaaac |
38002913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 38002908 - 38002945
Alignment:
| Q |
215 |
agaaacaataatgtcacctatttaatcctattttattt |
252 |
Q |
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| T |
38002908 |
agaaacaataatgtctcctatttaatccaattttattt |
38002945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 32523333 - 32523276
Alignment:
| Q |
86 |
tgaatgtatccaaatataaatgactttatctacaattaacttttaatcaaaatcaatt |
143 |
Q |
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| T |
32523333 |
tgaatgcatccaaacacaaatcactttatcttcaactaacttttaatcaaaatcaatt |
32523276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 40491664 - 40491721
Alignment:
| Q |
86 |
tgaatgtatccaaatataaatgactttatctacaattaacttttaatcaaaatcaatt |
143 |
Q |
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| T |
40491664 |
tgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaatt |
40491721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 2764471 - 2764423
Alignment:
| Q |
83 |
acgtgaatgtatccaaatataaatgactttatctacaattaacttttaa |
131 |
Q |
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| T |
2764471 |
acgtgaatgtatccaaatataaatcactttatattcaacttacttttaa |
2764423 |
T |
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