View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5559_low_9 (Length: 241)
Name: NF5559_low_9
Description: NF5559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5559_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 38003092 - 38003299
Alignment:
| Q |
15 |
tcttatttatctagctgtgaaagtaacgacaaagtggaaccaacgtagagtaaatggtattccatgattatgtcacattcnnnnnnnnnnnnnnnnattt |
114 |
Q |
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| T |
38003092 |
tcttacttatctagctgtgaaagtaacgacaaagtggaaccaacgtagagtaaatggtattccatgattatgtcacattcttttgttttttcttttattt |
38003191 |
T |
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| Q |
115 |
atctccaaaaccactagacatagcctctgttttctccaaaccatgtgtgnnnnnnnnatcttgctagcacctggtatcttgttccactgatcaatcttgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38003192 |
atctccaaaaccactagacatagcctctgttttctccaaaccatgtgt---ttttttatcttgctagctcctggtatcttgttccactgatcaatcttgg |
38003288 |
T |
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| Q |
215 |
aatgtccatat |
225 |
Q |
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||||||||||| |
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| T |
38003289 |
aatgtccatat |
38003299 |
T |
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