View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5560-Insertion-2 (Length: 785)

Name: NF5560-Insertion-2
Description: NF5560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5560-Insertion-2
NF5560-Insertion-2
[»] chr1 (6 HSPs)
chr1 (142-437)||(41164895-41165188)
chr1 (689-785)||(41164800-41164897)
chr1 (205-452)||(49350060-49350307)
chr1 (593-784)||(49349703-49349898)
chr1 (597-635)||(36209258-36209296)
chr1 (594-635)||(52502733-52502774)
[»] chr2 (11 HSPs)
chr2 (39-128)||(35887515-35887610)
chr2 (272-453)||(45329241-45329423)
chr2 (593-784)||(8178589-8178783)
chr2 (8-77)||(35542306-35542375)
chr2 (8-77)||(35559644-35559713)
chr2 (12-66)||(35918943-35918997)
chr2 (594-635)||(24247862-24247903)
chr2 (715-784)||(45328908-45328977)
chr2 (205-452)||(16291004-16291251)
chr2 (593-635)||(16291413-16291455)
chr2 (594-635)||(27511405-27511446)
[»] chr6 (5 HSPs)
chr6 (593-784)||(6080245-6080439)
chr6 (143-452)||(6079774-6080083)
chr6 (521-635)||(20430107-20430221)
chr6 (594-635)||(15335336-15335377)
chr6 (594-635)||(30883348-30883389)
[»] chr5 (9 HSPs)
chr5 (593-784)||(1289821-1290016)
chr5 (315-453)||(25482-25622)
chr5 (594-635)||(10027024-10027065)
chr5 (594-635)||(24628095-24628136)
chr5 (271-452)||(2078123-2078305)
chr5 (594-635)||(3691981-3692022)
chr5 (594-635)||(3874765-3874806)
chr5 (259-308)||(21912698-21912747)
chr5 (594-635)||(25540931-25540972)
[»] chr3 (6 HSPs)
chr3 (593-784)||(52136986-52137181)
chr3 (593-784)||(51449995-51450190)
chr3 (259-452)||(52136630-52136824)
chr3 (594-635)||(10112640-10112681)
chr3 (594-635)||(10249734-10249775)
chr3 (594-635)||(10013035-10013077)
[»] chr7 (1 HSPs)
chr7 (594-635)||(22845826-22845867)
[»] chr4 (3 HSPs)
chr4 (313-453)||(27452752-27452894)
chr4 (594-635)||(55557260-55557301)
chr4 (594-635)||(14145782-14145823)
[»] scaffold0262 (1 HSPs)
scaffold0262 (594-635)||(21046-21087)
[»] scaffold0134 (2 HSPs)
scaffold0134 (594-635)||(3804-3845)
scaffold0134 (338-453)||(3502-3617)
[»] scaffold0118 (2 HSPs)
scaffold0118 (594-635)||(23661-23702)
scaffold0118 (594-635)||(26616-26657)
[»] scaffold0029 (1 HSPs)
scaffold0029 (594-635)||(140401-140442)
[»] scaffold0002 (1 HSPs)
scaffold0002 (594-635)||(317868-317909)
[»] chr8 (1 HSPs)
chr8 (715-784)||(15217529-15217598)
[»] scaffold0003 (1 HSPs)
scaffold0003 (594-635)||(184816-184857)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 142 - 437
Target Start/End: Complemental strand, 41165188 - 41164895
Alignment:
Q  142 ctggatgcagtgaaaaatacgcaagggttgcaacctttttgtggatcggtgtgggcaaggaatctagttcatgagattaggactcattttaggacattga 241  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  41165188 ctggatgcagtgaaaaataagcaagggttgcaacatttttgtggattggtgtgggcaaggaatctagttcatgagattaggactcattttagaacatcga 41165089  T
Q  242 atataggcatgcttaaaaggaaaacctacggaaatagtggacacaatgattacgaggaggatcaattgtggtgtgcatacaagaaactaagtgag--tgt 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||    
T  41165088 atataggcatgcttaaaaggaaaacctacggaaatagtggacacaatgattacgaggaggatcaattgtggtgtccatacaagaaactaagtgagtgtgt 41164989  T
Q  340 gaaaaggcaaaagaattggacagttcaaattgtaagctttaatacactggcaatgtaagatcgataaatggggtaggcattactgttggtaagaagtg 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||| |||||||||||||||    
T  41164988 gaaaaggcaaaagaattggacagttcaaattgtaagctttaatacactgacaatgtaagatcgata----gggtaggcattattgttggtaagaagtg 41164895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 689 - 785
Target Start/End: Complemental strand, 41164897 - 41164800
Alignment:
Q  689 gtgaatgtggaggtaaatccatcataattttt-cgtcgccttttgatctagctatagctaatacgtgctttaagaaaagggaggggcatcttatcaca 785  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41164897 gtgaatgtggaggtaaatccatcataattttttcgtcgcctttttatctagctatagctaatacgtgctttaagaaaagggaggggcatcttatcaca 41164800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 452
Target Start/End: Complemental strand, 49350307 - 49350060
Alignment:
Q  205 ctagttcatgagattaggactcattttaggacattgaatataggcatgcttaaaaggaaaacctacggaaatagtggacacaatgattacgaggaggatc 304  Q
    ||||||||||||| ||||| || |||| | || | ||||||||| |  |||| | |||||| ||| |||| |||| |||||||||| || ||||||||||    
T  49350307 ctagttcatgagaataggattcgttttggaacttggaatataggtacacttaca-ggaaaatctatggaagtagtagacacaatgactaggaggaggatc 49350209  T
Q  305 aattgtggtgtgcatacaagaaactaagtgagtgtg--aaaaggcaaaagaattggacagttcaaattgtaagctttaatacactggcaatgtaagatcg 402  Q
    |||| |  ||||| |||||||||||||||| ||| |  ||||||| |||||||| || ||||||   | ||||||||  || |||||  | || ||||||    
T  49350208 aatt-tcatgtgcctacaagaaactaagtgggtggggaaaaaggcgaaagaattagatagttcaggatttaagctttggtatactggtgaagttagatcg 49350110  T
Q  403 ataaatggggtaggcattactgttggtaagaagtggaagaaggatattgt 452  Q
    | ||||||||||||||| | ||| | |||| |||||||||| ||||||||    
T  49350109 agaaatggggtaggcatcattgtggataaggagtggaagaaagatattgt 49350060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 593 - 784
Target Start/End: Complemental strand, 49349898 - 49349703
Alignment:
Q  593 taggagaaaatatttttctaggagtggatctaaatgggcatgt-cagactgtattgagaggttatgaggggttccatggggg-tatgccctcggagaggt 690  Q
    |||||||||| ||||||||||||| |||| |||||||||||||   || ||| | ||||||||  ||||| || |||||||| ||||  ||||| ||| |    
T  49349898 taggagaaaagatttttctaggaggggatttaaatgggcatgtagggagtgtttcgagaggtttcgagggtttgcatgggggatatggtctcggggagat 49349799  T
Q  691 gaatgtgga-ggtaaatccatcata-atttttcgtcgccttttgatctagctatagctaatacgtgctttaagaaaagggaggggcatcttatcac 784  Q
     |||| ||| |||||||||||| || ||||||| ||| ||||||||||  ||||||||||||| || || | |||||  || | ||||||||||||    
T  49349798 taatgcggagggtaaatccatcttagatttttcatcggcttttgatcttactatagctaatacttgtttcaggaaaatagatgagcatcttatcac 49349703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 597 - 635
Target Start/End: Complemental strand, 36209296 - 36209258
Alignment:
Q  597 agaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36209296 agaaaatatttttctaggaggggatctaaatgggcatgt 36209258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 52502774 - 52502733
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  52502774 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 52502733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 35887610 - 35887515
Alignment:
Q  39 cttttcttttcttggaagaagtttctgcagaagttgtttcagtttc---aggtc---cttttctcttctttgatggcaatgttgaagaatcactac 128  Q
    |||||||||||||||||||||||||| |||||||||||||||||||   |||||   ||||||||||||| |||||||||||||||||||||||||    
T  35887610 cttttcttttcttggaagaagtttcttcagaagttgtttcagtttcagaaggtccttcttttctcttcttggatggcaatgttgaagaatcactac 35887515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 272 - 453
Target Start/End: Complemental strand, 45329423 - 45329241
Alignment:
Q  272 gaaatagtggacacaatgattacgaggaggatcaattgtggtgtgcatacaagaaactaagtgagtgtg--aaaaggcaaaagaattggacagttcaaat 369  Q
    |||||||| ||||| ||||||| |||||||||||||| |  ||||| ||||||| |||||||| ||| |  ||||||| |||||||| || ||||||       
T  45329423 gaaatagtagacactatgattaggaggaggatcaatttta-tgtgcctacaagagactaagtgggtgaggaaaaaggcgaaagaattagatagttcagga 45329325  T
Q  370 tgtaagctttaatacactggcaatgtaagatcgataaatggggtaggcattactgttggtaagaagtggaagaaggatattgtg 453  Q
    | ||||||||  ||||| ||| | || ||||||| ||||||||||||||| | ||| | |||| |||||||||| |||||||||    
T  45329324 tttaagctttggtacacgggcgaagttagatcgagaaatggggtaggcataattgtggataaggagtggaagaaagatattgtg 45329241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 593 - 784
Target Start/End: Original strand, 8178589 - 8178783
Alignment:
Q  593 taggagaaaatatttttctaggagtggatctaaatgggcatgt-cagactgtattgagaggttatgaggggttccatgggggtatgccctcggagaggtg 691  Q
    |||||||||||||||||||||||| |||| |||||||||||||   || ||| | ||||||||  ||||| || ||||||||||||  ||||| ||| |     
T  8178589 taggagaaaatatttttctaggaggggatttaaatgggcatgtagggagtgtttcgagaggtttcgagggtttgcatgggggtatggtctcggggagatt 8178688  T
Q  692 aatgtgga-ggtaaatccatcata-atttttcgtcgccttttgatctagctatagctaatacgtgctttaagaaaagggaggggcatcttatcac 784  Q
    |||| ||| |||||||||||| || ||||||| ||  ||||||||||  ||||||||||||| || || | |||||  |||| |||| |||||||    
T  8178689 aatgcggagggtaaatccatcttagatttttcatcagcttttgatcttactatagctaatacttgtttcaggaaaatagaggagcattttatcac 8178783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 35542306 - 35542375
Alignment:
Q  8 aatcttccctcaacggaaccaggagggtgttcttttcttttcttggaagaagtttctgcagaagttgttt 77  Q
    ||||||||| || |||||||||||||| || |||||||||||| ||||||||||||||||||||| ||||    
T  35542306 aatcttcccccaccggaaccaggagggcgtccttttcttttctgggaagaagtttctgcagaagtagttt 35542375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 35559644 - 35559713
Alignment:
Q  8 aatcttccctcaacggaaccaggagggtgttcttttcttttcttggaagaagtttctgcagaagttgttt 77  Q
    ||||||||| || |||||||||||||| || |||||||||||| ||||||||||||||||||||| ||||    
T  35559644 aatcttcccccaccggaaccaggagggcgtccttttcttttctgggaagaagtttctgcagaagtagttt 35559713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 35918997 - 35918943
Alignment:
Q  12 ttccctcaacggaaccaggagggtgttcttttcttttcttggaagaagtttctgc 66  Q
    ||||| || ||||||||||||||||  ||||||||||||||||||||||||||||    
T  35918997 ttcccccaccggaaccaggagggtgcccttttcttttcttggaagaagtttctgc 35918943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 24247903 - 24247862
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  24247903 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 24247862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 715 - 784
Target Start/End: Complemental strand, 45328977 - 45328908
Alignment:
Q  715 atttttcgtcgccttttgatctagctatagctaatacgtgctttaagaaaagggaggggcatcttatcac 784  Q
    ||||||| ||||||||||||||  |||| ||||||||||| |||| |||||| |||| |||||| |||||    
T  45328977 atttttcatcgccttttgatcttactatcgctaatacgtgttttaggaaaagagaggagcatctcatcac 45328908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 205 - 452
Target Start/End: Original strand, 16291004 - 16291251
Alignment:
Q  205 ctagttcatgagattaggactcattttaggacattgaatataggcatgcttaaaaggaaaacctacggaaatagtggacacaatgattacgaggaggatc 304  Q
    ||||||||||||| ||||| || |||| | || | ||||||||| |  |||| | |||||| ||| |||| |||| |||||||||| || ||||||||||    
T  16291004 ctagttcatgagaataggattcgttttggaacttggaatataggtacacttaca-ggaaaatctatggaagtagtagacacaatgactaggaggaggatc 16291102  T
Q  305 aattgtggtgtgcatacaagaaactaagtgagtgtg--aaaaggcaaaagaattggacagttcaaattgtaagctttaatacactggcaatgtaagatcg 402  Q
    |||| |  | ||| |||||||||||||||| ||| |  |||| || ||||| || || |||| |   | ||||||||  || |||||  | || ||||||    
T  16291103 aatt-tcatatgcctacaagaaactaagtgggtggggaaaaatgcgaaagagttagatagtttaggatttaagctttggtatactggtgaagttagatcg 16291201  T
Q  403 ataaatggggtaggcattactgttggtaagaagtggaagaaggatattgt 452  Q
    | |||||||||||||||   ||| | |||| |||||||||| ||||||||    
T  16291202 agaaatggggtaggcatcgttgtggataaggagtggaagaaagatattgt 16291251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 635
Target Start/End: Original strand, 16291413 - 16291455
Alignment:
Q  593 taggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| ||||||||||||| |||| |||||||||||||    
T  16291413 taggagaaaagatttttctaggaggggatttaaatgggcatgt 16291455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 27511446 - 27511405
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||| ||||    
T  27511446 aggagaaaatgtttttctaggaggggatctaaatgggaatgt 27511405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 593 - 784
Target Start/End: Original strand, 6080245 - 6080439
Alignment:
Q  593 taggagaaaatatttttctaggagtggatctaaatgggcatgt-cagactgtattgagaggttatgaggggttccatgggggtatgccctcggagaggtg 691  Q
    |||||||||| |||||||||  || |||| ||||||||||||| | || ||| | |||||||| |||||| || ||||||||||||   |||| ||| |     
T  6080245 taggagaaaagatttttctaaaaggggatttaaatgggcatgtacggagtgtttcgagaggttttgagggtttgcatgggggtatggtatcggggagatt 6080344  T
Q  692 aatgtggagg-taaatccatcata-atttttcgtcgccttttgatctagctatagctaatacgtgctttaagaaaagggaggggcatcttatcac 784  Q
    |||||||||| |||||||||| || ||||||| ||| ||||||||||  ||||||||||||| || ||   |||||| |||| ||||||||||||    
T  6080345 aatgtggagggtaaatccatcttagatttttcatcggcttttgatcttactatagctaatacttgtttcgggaaaagagaggagcatcttatcac 6080439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 143 - 452
Target Start/End: Original strand, 6079774 - 6080083
Alignment:
Q  143 tggatgcagtgaaaaatacgcaagggttgcaacctttttgtggatcggtgtgggcaaggaatctagttcatgagattaggactcattttaggacattgaa 242  Q
    |||||| ||||||||||| ||||||||| |  | | || ||| |  |||| ||| || ||| ||||||||||||| ||||| || |||| | || | |||    
T  6079774 tggatgtagtgaaaaataagcaagggttcccgcatcttcgtgaacgggtgcgggtaaagaagctagttcatgagaataggattcgttttggaacctggaa 6079873  T
Q  243 tataggcatgcttaaaaggaaaacctacggaaatagtggacacaatgattacgaggaggatcaattgtggtgtgcatacaagaaactaagtgagtgtgaa 342  Q
    |||||| |  |||| | |||||| ||| |||| |||  |||||||||| || |||||||||||||| |  ||||| |||||||||||||||| ||| |||    
T  6079874 tataggtacacttaca-ggaaaatctatggaagtagaagacacaatgactaggaggaggatcaatt-tcatgtgcctacaagaaactaagtgggtgggaa 6079971  T
Q  343 aa--ggcaaaagaattggacagttcaaattgtaagctttaatacactggcaatgtaagatcgataaatggggtaggcattactgttggtaagaagtggaa 440  Q
    ||  ||| |||||||| || ||||||   | ||||||||  || |||||  | || ||||||| ||||||||||||||| | ||| | |||| |||||||    
T  6079972 aaaaggcgaaagaattagatagttcaggatttaagctttggtatactggtcaagttagatcgagaaatggggtaggcatcattgtggataaggagtggaa 6080071  T
Q  441 gaaggatattgt 452  Q
    ||| ||||||||    
T  6080072 gaaagatattgt 6080083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 521 - 635
Target Start/End: Complemental strand, 20430221 - 20430107
Alignment:
Q  521 aagtatggttataagaacaccataaagcaaattttttggtggatttagaatgcttaacttaggaaatatcagtaggagaaaatatttttctaggagtgga 620  Q
    ||||| ||||| ||||||||| ||||| ||| |||| || |||| ||||| |||||| |||||| |   || |||||||||| ||||||||||||| |||    
T  20430221 aagtagggttagaagaacaccttaaagtaaagttttgggaggatctagaaggcttaatttaggatagcccattaggagaaaagatttttctaggagggga 20430122  T
Q  621 tctaaatgggcatgt 635  Q
    | |||||||||||||    
T  20430121 tttaaatgggcatgt 20430107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 15335377 - 15335336
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  15335377 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 15335336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 30883389 - 30883348
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  30883389 aggagaaaatatttttctaggaggggaactaaatgggcatgt 30883348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 593 - 784
Target Start/End: Complemental strand, 1290016 - 1289821
Alignment:
Q  593 taggagaaaatatttttctaggagtggatctaaatgggcatgt-cagactgtattgagaggttatgaggggttccat-gggggtatgccctcggagaggt 690  Q
    |||||||||| ||||||||||||| |||| |||||||||||||   || ||| | |||||||| |||||| || ||| |||||||||  ||||| ||| |    
T  1290016 taggagaaaagatttttctaggaggggatttaaatgggcatgtagggagtgtttcgagaggttttgagggtttgcatggggggtatggtctcggggagat 1289917  T
Q  691 gaatgtgga-ggtaaatccatcata-atttttcgtcgccttttgatctagctatagctaatacgtgctttaagaaaagggaggggcatcttatcac 784  Q
     |||  ||| |||||||||||| || ||||| | ||| ||||||||||  ||||||||||||| || || | |||||| |||| ||||||||||||    
T  1289916 taatacggagggtaaatccatcttagattttacatcggcttttgatcttactatagctaatacttgtttcaggaaaagagaggagcatcttatcac 1289821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 315 - 453
Target Start/End: Original strand, 25482 - 25622
Alignment:
Q  315 tgcatacaagaaactaagtgagt--gtgaaaaggcaaaagaattggacagttcaaattgtaagctttaatacactggcaatgtaagatcgataaatgggg 412  Q
    ||||||||||||||| |||| ||  ||||||| || ||| |||| || ||||||   | ||||||||  ||||| || || || ||||| ||||||||||    
T  25482 tgcatacaagaaactgagtgggtaggtgaaaaagcgaaaaaatttgatagttcaggatttaagctttggtacacgggtaaagttagatccataaatgggg 25581  T
Q  413 taggcattactgttggtaagaagtggaagaaggatattgtg 453  Q
    ||||||||| ||| | |||| ||||||||||  ||||||||    
T  25582 taggcattattgtggataaggagtggaagaaatatattgtg 25622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 10027065 - 10027024
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  10027065 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 10027024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 24628095 - 24628136
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  24628095 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 24628136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 452
Target Start/End: Complemental strand, 2078305 - 2078123
Alignment:
Q  271 ggaaatagtggacacaatgattacgaggaggatcaattgtggtgtgcatacaagaaactaagtgagtgtg--aaaaggcaaaagaattggacagttcaaa 368  Q
    |||| |||| |||||||||| || ||||| |||||||| |  ||||| |||||||||||||| | ||| |  ||||||| |||||||| || ||||||      
T  2078305 ggaagtagtagacacaatgactaggaggaagatcaatt-tcatgtgcctacaagaaactaagcgggtggggaaaaaggcgaaagaattagatagttcagg 2078207  T
Q  369 ttgtaagctttaatacactggcaatgtaagatcgataaatggggtaggcattactgttggtaagaagtggaagaaggatattgt 452  Q
     | ||||||||  || |||||  | || ||||||| |||||||||||||||   ||| | |||| |||||||||| ||||||||    
T  2078206 atttaagctttggtatactggtgaagttagatcgagaaatggggtaggcatctttgtggataaggagtggaagaaagatattgt 2078123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 3692022 - 3691981
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| |||||||| |||||||||    
T  3692022 aggagaaaatgtttttctaggaggggatctaagtgggcatgt 3691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 3874765 - 3874806
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| |||||||| |||||||||    
T  3874765 aggagaaaatgtttttctaggaggggatctaagtgggcatgt 3874806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 21912698 - 21912747
Alignment:
Q  259 aggaaaacctacggaaatagtggacacaatgattacgaggaggatcaatt 308  Q
    ||||||| ||||||||| ||||||||  ||||||| ||||||||||||||    
T  21912698 aggaaaatctacggaaagagtggacagtatgattaggaggaggatcaatt 21912747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 25540931 - 25540972
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||| ||||||||||||||    
T  25540931 aggagaaaatgtttttctaggaggggaactaaatgggcatgt 25540972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 593 - 784
Target Start/End: Original strand, 52136986 - 52137181
Alignment:
Q  593 taggagaaaatatttttctaggagtggatctaaatgggcatgtcag-actgtattgagaggttatgaggggttccatggggg-tatgccctcggagaggt 690  Q
    |||||||||| ||||||||||||| |||| |||||||||||||  | | ||| |  ||||||| |||||| || |||||||| ||||  ||||| ||| |    
T  52136986 taggagaaaagatttttctaggaggggatttaaatgggcatgtagggagtgtttcaagaggttttgagggtttgcatggggggtatggtctcggggagat 52137085  T
Q  691 gaatgtggagg-taaatccatcata-atttttcgtcgccttttgatctagctatagctaatacgtgctttaagaaaagggaggggcatcttatcac 784  Q
     |||| ||||| |||||||||| || ||||||| ||| ||||||||||  ||||||||||||| || || | |||||| |||| ||||| ||||||    
T  52137086 taatgcggagggtaaatccatcttagatttttcatcgacttttgatcttactatagctaatacttgtttcaggaaaagagaggagcatcctatcac 52137181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 593 - 784
Target Start/End: Complemental strand, 51450190 - 51449995
Alignment:
Q  593 taggagaaaatatttttctaggagtggatctaaatgggcatgtcag-actgtattgagaggttatgaggggttccatggggg-tatgccctcggagaggt 690  Q
    |||||||||| |||| |||||||| |||| |||||||||||||  | | ||| | ||||||||  ||||| || |||||||| ||||  ||||| ||| |    
T  51450190 taggagaaaagatttctctaggaggggatttaaatgggcatgtagggagtgtttcgagaggtttcgagggtttgcatggggggtatggtctcggggagat 51450091  T
Q  691 gaatgtggagg-taaatccatcata-atttttcgtcgccttttgatctagctatagctaatacgtgctttaagaaaagggaggggcatcttatcac 784  Q
     |||| ||||| |||||||||| || ||||||| ||| ||||||||||  ||||||||||||| || || | |||||  |||| ||||||||||||    
T  51450090 taatgcggagggtaaatccatcttagatttttcatcggcttttgatcttactatagctaatacttgtttcaggaaaatagaggagcatcttatcac 51449995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 259 - 452
Target Start/End: Original strand, 52136630 - 52136824
Alignment:
Q  259 aggaaaacctacggaaatagtggacacaatgattacgaggaggatcaattgtggtgtgcatacaagaaactaagtgagtgtg--aaaaggcaaaagaatt 356  Q
    ||||||| ||| |||| |||| |||||||||| || |||||||||||||| |  | ||| |||||||||||||||| ||| |  |||| || ||||||||    
T  52136630 aggaaaatctatggaagtagtagacacaatgactaggaggaggatcaatt-tcatatgcctacaagaaactaagtgggtgggaaaaaaagcgaaagaatt 52136728  T
Q  357 ggacagttcaaattgtaagctttaatacactggcaatgtaagatcgataaatggggtaggcattactgttggtaagaagtggaagaaggatattgt 452  Q
     || |||| |   | ||||||||  || ||| | || || ||||||| ||||||||||||||| | ||| | |||| |||||||||| ||||||||    
T  52136729 agatagttaaggatttaagctttggtaaactagaaaagttagatcgagaaatggggtaggcatcattgtggataaggagtggaagaaagatattgt 52136824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 10112681 - 10112640
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  10112681 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 10112640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 10249775 - 10249734
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  10249775 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 10249734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 10013077 - 10013035
Alignment:
Q  594 aggagaaaatatttttctagga-gtggatctaaatgggcatgt 635  Q
    |||||||||||||||||||||| | ||||||||||||||||||    
T  10013077 aggagaaaatatttttctaggagggggatctaaatgggcatgt 10013035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 22845867 - 22845826
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  22845867 aggagaaaatatttttctaggaggggatctaaatgggcatgt 22845826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 313 - 453
Target Start/End: Complemental strand, 27452894 - 27452752
Alignment:
Q  313 tgtgcatacaagaaactaagtgagtgtg--aaaaggcaaaagaattggacagttcaaattgtaagctttaatacactggcaatgtaagatcgataaatgg 410  Q
    ||||| |||||||||||||||| ||| |  ||||||| |||||| | || ||||||   | |||||||| |||||| ||| | || ||||||| ||||||    
T  27452894 tgtgcctacaagaaactaagtgggtggggaaaaaggcgaaagaagtagatagttcaggatttaagctttgatacacaggcgaagttagatcgagaaatgg 27452795  T
Q  411 ggtaggcattactgttggtaagaagtggaagaaggatattgtg 453  Q
    ||||||||| | ||| | |||  |||||||||| |||||||||    
T  27452794 ggtaggcatcattgtggataacgagtggaagaaagatattgtg 27452752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 55557260 - 55557301
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  55557260 aggagaaaatatttttctaggagggggtctaaatgggcatgt 55557301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 14145782 - 14145823
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| || ||||||||| ||||||||||||||||||    
T  14145782 aggagaaaatgttcttctaggagaggatctaaatgggcatgt 14145823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 21087 - 21046
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  21087 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 21046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 3804 - 3845
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  3804 aggagaaaatatttttctaggaggggatctaaatgggtatgt 3845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 453
Target Start/End: Original strand, 3502 - 3617
Alignment:
Q  338 gtgaaaaggcaaaagaattggacagttcaaattgtaagctttaatacactggcaatgtaagatcgataaatggggtaggcattactgttggtaagaagtg 437  Q
    |||||||||| |||||||| || |||||||  | ||||| || ||| ||||| || || ||||||| |||||  |||||||||| ||| | |||||| |     
T  3502 gtgaaaaggcgaaagaattagatagttcaagatataagcattgataaactggaaaagttagatcgagaaatgatgtaggcattattgtggataagaaatt 3601  T
Q  438 gaagaaggatattgtg 453  Q
    ||| ||||||||||||    
T  3602 gaaaaaggatattgtg 3617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 23661 - 23702
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  23661 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 23702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 26616 - 26657
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  26616 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 26657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 140401 - 140442
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  140401 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 140442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 317868 - 317909
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  317868 aggagaaaatgtttttctaggaggggatctaaatgggcatgt 317909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 715 - 784
Target Start/End: Complemental strand, 15217598 - 15217529
Alignment:
Q  715 atttttcgtcgccttttgatctagctatagctaatacgtgctttaagaaaagggaggggcatcttatcac 784  Q
    ||||||| ||| ||||||||||  |||||||||||||||| |||| |||||| |||| |||||| |||||    
T  15217598 atttttcatcggcttttgatcttactatagctaatacgtgttttaggaaaagagaggagcatctcatcac 15217529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 184857 - 184816
Alignment:
Q  594 aggagaaaatatttttctaggagtggatctaaatgggcatgt 635  Q
    |||||||||| |||||||||||| |||||||| |||||||||    
T  184857 aggagaaaatgtttttctaggaggggatctaagtgggcatgt 184816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University