View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5560-Insertion-3 (Length: 685)

Name: NF5560-Insertion-3
Description: NF5560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5560-Insertion-3
NF5560-Insertion-3
[»] chr7 (1 HSPs)
chr7 (7-685)||(37659661-37660339)


Alignment Details
Target: chr7 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 7 - 685
Target Start/End: Complemental strand, 37660339 - 37659661
Alignment:
Q  7 acatcatctttatgtcattctgtagagtaatggagttgctcattgcaggccatctgtaaagtctgttattcaaggatttctgccagggctagcattaaag 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37660339 acatcatctttatgtcattctgtagagtaatggagttactcattgcaggccatctgtaaagtctgttattcaaggatttctgccagggctagcattaaag 37660240  T
Q  107 ttatttctcatattgcttccaagtgtcctcatggcaatgtccaaaattgaaggttactcatcgctttctgttttggaacggagatcagcttcaaaatatt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  37660239 ttatttctcatattgcttccaagtgtcctcatggcaatgtccaaaattgaaggttattcatcgctctctgttttggaacggagatcagcttcaaaatatt 37660140  T
Q  207 acttgtttgttctcatcaatgtgttccttgggagcattgtaacaggatcggcatttcagcaactcgagcatcttatcaatgagccctcttcagagtaggc 306  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37660139 acttgtttgttctcattaatgtgttccttgggagcattgtaacaggatcggcatttcagcaactcgagcatcttatcaatgagccctcttcagagtaggc 37660040  T
Q  307 tctgagcttgatgagtttagacagctttcatttcggcactgatattgacaacaactgacatgatgtttctattaataatatttgcaggttcacaaaaact 406  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37660039 tctgagcttgacgagtttagacagctttcatttcggcactgatattgacaacaactgacatgatgtttctattaataatttttgcaggttcacaaaaact 37659940  T
Q  407 gttggcagtacaatccccatgaaagccacatttttcatgacatacattatgatagacgggtgggctggaatagccggagaaatcctcaggttatcttcgt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  37659939 gttggcagtacaatccccatgaaagccacatttttcatgacatacattatgatagacgggtgggctggaattgctggagaaattctcaggttatcttcgt 37659840  T
Q  507 taatcacgttccaccttaaaaacacatttttagtgaaaacggagcaagacagacagaatgctatggatcctggtagcttgaattttgctacatctgaacc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37659839 taatcacgttccaccttaaaaacacatttttagtgaaaacggagcaagacagacagaatgctatggatcctggtagcttgaattttgctacatctgaacc 37659740  T
Q  607 tcgaatccagttatatttcatgctggggcatgtctatgctccagtcacacctttacttcttcccttcatcgtagtcttc 685  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37659739 tcgaatccagttatatttcatgctggggcatgtctatgctccagtcacacctttacttcttcccttcatcgtagtcttc 37659661  T

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