View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5560-Insertion-4 (Length: 402)
Name: NF5560-Insertion-4
Description: NF5560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5560-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Original strand, 45165851 - 45166245
Alignment:
| Q |
8 |
ataatatgtcctcagatcaatatcaatctctggttacatgggtatgtattattattacataatggagaaaatggatgaaaatttaagttttgctgtactt |
107 |
Q |
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| T |
45165851 |
ataatatgtcctcagatcaatatcaatctctggttacatgggtatgtattattattacataatggagaatatggatgaaaatttaagttttgctgtactt |
45165950 |
T |
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| Q |
108 |
tatggtttaagactttcaaattcaatatgtaggccatgcctcagctaaccgacagatcaaagcttccaagtattctagatcctgttatccaaaatacaat |
207 |
Q |
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| T |
45165951 |
tatggtttaagactttcaaattcaatatgtaggccatgcctcagctaaccgacagatcaaagcttccaagtattctagatcctgttatccaaaatacaat |
45166050 |
T |
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| Q |
208 |
ggatttgaagcatttatatcaggttcattgaatagaagtactgtaatcacatgttttaatgctgagtgttaaatgctagtacttcttaattcatctcaac |
307 |
Q |
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| T |
45166051 |
ggatttgaagcatttatatcaggttcattgaatagaagtactgtaatcacatgttttaatgctgagtgttaaatgctagtacttcttaattcatctcaac |
45166150 |
T |
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| Q |
308 |
attctactctacaggtagctgcagtggctgtgctatgtgtgcaagctgaaccaagttacaggccacttataacagatgttctacactctctcatc |
402 |
Q |
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| T |
45166151 |
attctactctacaggtagctgcagtggctgtgctatgtgtgcaagctgaaccaagttataggccacttataacagatgttctacactctctcatc |
45166245 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 395
Target Start/End: Complemental strand, 49121063 - 49120988
Alignment:
| Q |
320 |
aggtagctgcagtggctgtgctatgtgtgcaagctgaaccaagttacaggccacttataacagatgttctacactc |
395 |
Q |
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| T |
49121063 |
aggttgctgcggtagctgtgctatgtgtgcaaccagagccaagttaccggccactaatcacagatgttcttcactc |
49120988 |
T |
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