View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5560-Insertion-6 (Length: 240)
Name: NF5560-Insertion-6
Description: NF5560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5560-Insertion-6 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 52052205 - 52051973
Alignment:
| Q |
8 |
ggtaattagtgtcatgggttgttgatgttagtgctgcagtgttatgatcagaatcaagactactatttttggtaattgataagattgttgaagtagcagc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52052205 |
ggtaattagtgtcatgggttgttgatgttagtgctgcagtgttatgatcagaatcaagactactatttttagtaattgataagattgttgaagtagcagc |
52052106 |
T |
|
| Q |
108 |
aggagcatctgtgtttgttgttttcaaaacttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgtatctggatat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52052105 |
aggagcatctgtgtttgttgttttcaaaacttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgaatctggatat |
52052006 |
T |
|
| Q |
208 |
gcttcttttgaacatctccatttctttccatct |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
52052005 |
gcttcttttgaacatctccatttctttccatct |
52051973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 18199789 - 18199903
Alignment:
| Q |
126 |
tgttttcaaaacttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgtatctggatatgcttcttttgaacatctc |
225 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || | ||||||||||||||||||||| |||||| |
|
|
| T |
18199789 |
tgttttaacaacttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctc |
18199888 |
T |
|
| Q |
226 |
catttctttccatct |
240 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
18199889 |
catttttttccatct |
18199903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 7246548 - 7246650
Alignment:
| Q |
138 |
ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgtatctggatatgcttcttttgaacatctccatttctttcca |
237 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||| |
|
|
| T |
7246548 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
7246647 |
T |
|
| Q |
238 |
tct |
240 |
Q |
| |
|
||| |
|
|
| T |
7246648 |
tct |
7246650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 42092014 - 42091957
Alignment:
| Q |
138 |
ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtacttt |
195 |
Q |
| |
|
||||||||||||||||||||||||| | || | ||||||||| ||||||||||||||| |
|
|
| T |
42092014 |
ttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttt |
42091957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University