View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5560-Insertion-7 (Length: 238)
Name: NF5560-Insertion-7
Description: NF5560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5560-Insertion-7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 43207011 - 43206780
Alignment:
| Q |
7 |
agctactacctcccttctccctctgccaaatcctcaccgttagatcagctgacccactcaccaacaaatcatcaacgttgactaaacaaagtattgcccc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43207011 |
agctactacctcccttctccctctgccaaatcctcaccgttagatcagctgacccactcgccaacaaatcatcaacgttgactaaacaaagtattgcccc |
43206912 |
T |
|
| Q |
107 |
actatgacccctcaacttttccttcaacacgatgtcgttttgtttatcctgccactgacaaatcgtcccgtcactcccacctgaaaacaacaccgttcca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43206911 |
actatgacccctcaacttttccttcaacacgatgtcgttttgtttatcctgccactgacaaatcgtcccgtcactcccacctgaaaacaacaccgttcca |
43206812 |
T |
|
| Q |
207 |
tcactgttcaatgccaacgcattaacggctgg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43206811 |
tcactgttcaatgccaacgcattaacggctgg |
43206780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 37303891 - 37303823
Alignment:
| Q |
32 |
ccaaatcctcaccgttagatcagctgacccactcaccaacaaatcatcaacgttgactaaacaaagtat |
100 |
Q |
| |
|
||||||||| ||||| ||||||| || ||||||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
37303891 |
ccaaatcctaaccgtccgatcagcagaaccactcagcaacaaatcagaaacgttgatcaaacaaagtat |
37303823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University