View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5560_high_4 (Length: 311)

Name: NF5560_high_4
Description: NF5560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5560_high_4
NF5560_high_4
[»] chr5 (2 HSPs)
chr5 (17-311)||(26352679-26352972)
chr5 (200-297)||(9817039-9817136)
[»] chr3 (9 HSPs)
chr3 (17-270)||(20014010-20014255)
chr3 (157-305)||(26649142-26649289)
chr3 (228-306)||(19836063-19836141)
chr3 (203-272)||(19904678-19904747)
chr3 (230-305)||(19958393-19958468)
chr3 (230-305)||(20032281-20032356)
chr3 (230-305)||(20034450-20034525)
chr3 (230-272)||(20004305-20004347)
chr3 (243-311)||(19877609-19877677)
[»] chr1 (2 HSPs)
chr1 (200-305)||(1719151-1719256)
chr1 (91-169)||(25999282-25999361)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 26352679 - 26352972
Alignment:
Q  17 agtgagactgcagaatcatctgtcagttttcattcccaacacggcaaatgtgatgctacatccattagcagttaaaagaaagtgaaaaataatgtagaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26352679 agtgagactgcagaatcatctgtcagttttcattcccaacacggcaaatgtgatgctacatccattagcagttaaaagaaagtgaaaaataatgtagaat 26352778  T
Q  117 aaccctaacttctaatgcacaagatcttggttagaaccagtgcaaaatatgctcctaaaattattttagtcaacagnnnnnnngtgatactctagattat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  26352779 aaccctaacttctaatgcacaagatcttggttagaaccagtgcaaaatatgctcctaaaattattttagtcaacagaaaaaaagtgatactctagattat 26352878  T
Q  217 gctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacatttacccacc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  26352879 gctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatcta-ctaaaagactcaagttcggtcccttcacatttactcacc 26352972  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 9817136 - 9817039
Alignment:
Q  200 gtgatactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtccctt 297  Q
    |||||||||||||||| |||||||  ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||  |||| ||| |||||||    
T  9817136 gtgatactctagattaagctcttcatatctcaaaatcaatattttcactgacttcaatattgccatgatctacataatagcttcaacttcagtccctt 9817039  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 20014010 - 20014255
Alignment:
Q  17 agtgagactgcagaatcatctgtcagttttcattcccaacacggcaaatgtgatgctacatccattagcagttaaaagaaagtgaaaaataatgtagaat 116  Q
    ||||| |||||||||| |||| |||  |||||||| |||||| ||||||| ||| ||||||||||||||||| |||||||||||| || ||||  |||      
T  20014010 agtgatactgcagaattatctatcatctttcattcacaacactgcaaatgcgatactacatccattagcagtgaaaagaaagtgataagtaattcagagg 20014109  T
Q  117 aaccctaacttctaatgcacaagatcttggttagaaccagtgcaaaatatgctcctaaaattattttagtcaacagnnnnnnngtgatactctagattat 216  Q
    ||||||||||||||||     |||   ||||||| | || ||||||||||||||||||||||||||||||||||||       ||||||||||| | |||    
T  20014110 aaccctaacttctaat-----aga--atggttagcaacaatgcaaaatatgctcctaaaattattttagtcaacag-aataaagtgatactctaaactat 20014201  T
Q  217 gctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatct 270  Q
    ||| |||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  20014202 gcttttcatataacaaaatcaatatcttcattgacttcaatatttccatgatct 20014255  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 305
Target Start/End: Complemental strand, 26649289 - 26649142
Alignment:
Q  157 tgcaaaatatgctcctaaaattattttagtcaacagnnnnnnngtgatactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaa 256  Q
    |||||||||||||||||||| |||||||||||||||       ||||||||| ||||||||||||||  ||||||||||| ||||| |||||| ||||||    
T  26649289 tgcaaaatatgctcctaaaactattttagtcaacagaaaaaa-gtgatactccagattatgctcttcatataacaaaatcgatatcgtcattggcttcaa 26649191  T
Q  257 tattgccatgatctacctaaaagactcaagttcggtcccttcacattta 305  Q
    |||||||||||||| | ||| |||||| ||||| |||||||||| ||||    
T  26649190 tattgccatgatctgcataacagactctagttcagtcccttcacgttta 26649142  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 19836141 - 19836063
Alignment:
Q  228 aacaaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacatttac 306  Q
    ||||||||||| | ||||| |||||||||||||| |||||||| | ||| || ||||| ||| ||||||||||||||||    
T  19836141 aacaaaatcaacaacttcactgacttcaatattgtcatgatcttcataataggctcaacttcagtcccttcacatttac 19836063  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 19904678 - 19904747
Alignment:
Q  203 atactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctac 272  Q
    |||||||||||||||||||||  ||||||||||||||||| | | ||| |||||||| | ||||||||||    
T  19904678 atactctagattatgctcttcatataacaaaatcaatatcataaatgaattcaatatcgtcatgatctac 19904747  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 19958468 - 19958393
Alignment:
Q  230 caaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacattta 305  Q
    |||||||| |||||||||||||||||||||||||||||| | | | | || ||||| |||  ||||||||||||||    
T  19958468 caaaatcagtatcttcattgacttcaatattgccatgatttgcatcatagcctcaaattcaatcccttcacattta 19958393  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 20032281 - 20032356
Alignment:
Q  230 caaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacattta 305  Q
    ||||||||  ||||||||||||||||||||||||||||| | | ||| || ||||| |||  ||||||||||||||    
T  20032281 caaaatcagcatcttcattgacttcaatattgccatgatttgcataatagtctcaacttcaatcccttcacattta 20032356  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 20034450 - 20034525
Alignment:
Q  230 caaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacattta 305  Q
    ||||||||  ||||||||||||||||||||||||||||| | | ||| || ||||| |||  ||||||||||||||    
T  20034450 caaaatcagcatcttcattgacttcaatattgccatgatttgcataatagtctcaacttcaatcccttcacattta 20034525  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 20004305 - 20004347
Alignment:
Q  230 caaaatcaatatcttcattgacttcaatattgccatgatctac 272  Q
    ||||||||||||   ||||||||||||||||||||||||||||    
T  20004305 caaaatcaatataaccattgacttcaatattgccatgatctac 20004347  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 19877609 - 19877677
Alignment:
Q  243 ttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttcacatttacccacc 311  Q
    ||||||||||| |||||||||||||| ||| ||| ||  | ||  ||||||||||||||||||| ||||    
T  19877609 ttcattgacttgaatattgccatgatatacataatagcgttaaactcggtcccttcacatttactcacc 19877677  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 1719256 - 1719151
Alignment:
Q  200 gtgatactctagattatgctcttcgaataacaaaatcaatatcttcattgacttcaatattgccatgatctacctaaaagactcaagttcggtcccttca 299  Q
    |||||||||| |||||  ||||||  ||||||||||||||||||||| ||||||||||||||||||||||| | ||| || ||| ||||| |||||||||    
T  1719256 gtgatactctcgattacactcttcatataacaaaatcaatatcttcaatgacttcaatattgccatgatctgcataacagcctctagttcagtcccttca 1719157  T
Q  300 cattta 305  Q
    ||||||    
T  1719156 cattta 1719151  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 25999282 - 25999361
Alignment:
Q  91 aaagaaagtgaa-aaataatgtagaataaccctaacttctaatgcacaagatcttggttagaaccagtgcaaaatatgct 169  Q
    |||||||||||| |||||||| |||||| |  |||||||||||||||||  |||||||||| |||||| |||||| ||||    
T  25999282 aaagaaagtgaacaaataatgcagaatatctgtaacttctaatgcacaaattcttggttagcaccagtccaaaatttgct 25999361  T

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