View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5560_high_5 (Length: 304)
Name: NF5560_high_5
Description: NF5560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5560_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 15550019 - 15550295
Alignment:
| Q |
15 |
agatgaacaa-ttgtcaatatagtcggattattatgaacatagtatttgtcactacctggcatatgacatcgattaaaacgaaaaattaccatattctat |
113 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15550019 |
agatgaacaaattgtcaatatagtcggtttattgtgaacctagtatttgtcactacctggcatatgacatcaattaaaacgaaaaattaccatattctat |
15550118 |
T |
|
| Q |
114 |
acaaaaattaggatacatatccaattaattgattttg--atatcatgaacattgctatttgtaaaatgacagaaaatctattaaaatggtagcattcaat |
211 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15550119 |
acaaaaattagcatacatatccaattaattgattttgatatatcatgaacctttgtatttgtgaaatgacagaaaatctattaaattggtagcattcaat |
15550218 |
T |
|
| Q |
212 |
aacttctagtaaatattcaactagtgaattaaaaaggcttataaatataatcatgtccataaaacttcatccaaatat |
289 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15550219 |
aacttcttgtaaatattcaactattgaattaaaaaggcttataaa-ataatcatgtccataaaacttcatccaaatat |
15550295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University