View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5560_high_9 (Length: 249)

Name: NF5560_high_9
Description: NF5560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5560_high_9
NF5560_high_9
[»] chr1 (29 HSPs)
chr1 (5-241)||(34066344-34066579)
chr1 (1-196)||(8435280-8435475)
chr1 (1-239)||(22456499-22456736)
chr1 (40-241)||(16190222-16190423)
chr1 (5-239)||(49147899-49148133)
chr1 (1-231)||(22453189-22453418)
chr1 (1-186)||(23990141-23990325)
chr1 (1-111)||(22447955-22448065)
chr1 (100-239)||(1936628-1936770)
chr1 (1-114)||(17618868-17618981)
chr1 (97-239)||(39546244-39546387)
chr1 (4-110)||(3087513-3087619)
chr1 (141-239)||(32506000-32506098)
chr1 (119-239)||(10764921-10765039)
chr1 (119-239)||(13493264-13493382)
chr1 (122-239)||(13495989-13496104)
chr1 (172-239)||(27282283-27282351)
chr1 (1-77)||(25662861-25662937)
chr1 (1-77)||(28138614-28138690)
chr1 (1-77)||(28141864-28141940)
chr1 (19-77)||(14159085-14159144)
chr1 (100-233)||(15297339-15297469)
chr1 (1-77)||(21911050-21911126)
chr1 (97-227)||(21153269-21153399)
chr1 (1-64)||(2405808-2405867)
chr1 (1-46)||(34732112-34732157)
chr1 (1-37)||(49852904-49852940)
chr1 (1-36)||(45941738-45941773)
chr1 (1-37)||(21110924-21110960)
[»] chr7 (40 HSPs)
chr7 (1-239)||(23313266-23313504)
chr7 (1-239)||(23107989-23108228)
chr7 (1-141)||(22083205-22083345)
chr7 (97-239)||(3862007-3862150)
chr7 (42-133)||(16547229-16547321)
chr7 (42-133)||(16618341-16618433)
chr7 (42-133)||(17152181-17152273)
chr7 (97-239)||(36843037-36843181)
chr7 (117-239)||(33312996-33313118)
chr7 (117-239)||(36222431-36222552)
chr7 (119-239)||(6967149-6967267)
chr7 (117-239)||(23759730-23759852)
chr7 (119-239)||(17863220-17863338)
chr7 (97-239)||(9765803-9765945)
chr7 (175-239)||(294866-294929)
chr7 (117-236)||(11279496-11279614)
chr7 (22-77)||(26808520-26808575)
chr7 (119-239)||(17866479-17866597)
chr7 (1-77)||(1636703-1636779)
chr7 (1-77)||(5189466-5189542)
chr7 (1-70)||(24423217-24423286)
chr7 (1-77)||(44672798-44672874)
chr7 (117-239)||(46846434-46846556)
chr7 (19-77)||(20436933-20436992)
chr7 (171-239)||(24783410-24783479)
chr7 (19-77)||(1633475-1633534)
chr7 (22-64)||(5241959-5242001)
chr7 (6-70)||(22952824-22952888)
chr7 (1-64)||(17731104-17731163)
chr7 (1-38)||(1960306-1960343)
chr7 (1-55)||(10345469-10345519)
chr7 (1-64)||(11397831-11397891)
chr7 (1-73)||(48645742-48645810)
chr7 (5-64)||(35961384-35961439)
chr7 (1-37)||(4595780-4595816)
chr7 (68-116)||(6214132-6214180)
chr7 (22-54)||(26075463-26075495)
chr7 (22-54)||(26099250-26099282)
chr7 (1-37)||(26557806-26557842)
chr7 (1-37)||(33844391-33844427)
[»] chr6 (41 HSPs)
chr6 (13-239)||(16883677-16883903)
chr6 (1-239)||(20527167-20527407)
chr6 (1-196)||(11183842-11184037)
chr6 (1-240)||(12980499-12980737)
chr6 (1-240)||(12983386-12983624)
chr6 (1-141)||(28118049-28118189)
chr6 (4-141)||(9313551-9313687)
chr6 (1-133)||(15578677-15578810)
chr6 (97-239)||(19664767-19664909)
chr6 (1-77)||(16731609-16731685)
chr6 (97-237)||(15540574-15540713)
chr6 (100-239)||(32427303-32427441)
chr6 (1-109)||(2773167-2773275)
chr6 (42-133)||(12747035-12747127)
chr6 (97-239)||(15535058-15535199)
chr6 (1-110)||(20189192-20189301)
chr6 (1-110)||(22146690-22146799)
chr6 (42-132)||(28894281-28894372)
chr6 (117-239)||(13017311-13017433)
chr6 (117-239)||(30978333-30978455)
chr6 (120-239)||(27649104-27649223)
chr6 (119-239)||(14790620-14790738)
chr6 (119-239)||(14795648-14795766)
chr6 (117-239)||(22221726-22221845)
chr6 (117-239)||(22247561-22247680)
chr6 (171-239)||(1838475-1838544)
chr6 (141-239)||(32704400-32704498)
chr6 (1-64)||(28111579-28111640)
chr6 (1-77)||(965027-965103)
chr6 (4-60)||(28107530-28107584)
chr6 (1-64)||(6514283-6514344)
chr6 (1-56)||(13005488-13005541)
chr6 (1-64)||(14281292-14281353)
chr6 (1-62)||(5260099-5260158)
chr6 (1-69)||(17733259-17733328)
chr6 (1-55)||(17106395-17106445)
chr6 (1-37)||(10290296-10290332)
chr6 (1-46)||(2372642-2372685)
chr6 (1-64)||(20186031-20186090)
chr6 (1-64)||(22149901-22149960)
chr6 (42-133)||(35026933-35027026)
[»] chr8 (28 HSPs)
chr8 (1-239)||(41778749-41778985)
chr8 (1-239)||(13097022-13097264)
chr8 (4-229)||(44008307-44008525)
chr8 (97-231)||(12575401-12575535)
chr8 (1-131)||(12820651-12820783)
chr8 (119-241)||(14418465-14418585)
chr8 (4-133)||(587537-587666)
chr8 (4-133)||(626256-626385)
chr8 (42-133)||(5828253-5828345)
chr8 (97-196)||(41836294-41836394)
chr8 (1-77)||(2847591-2847667)
chr8 (1-77)||(5952394-5952470)
chr8 (1-133)||(27805370-27805503)
chr8 (1-61)||(45155043-45155101)
chr8 (1-75)||(12104224-12104298)
chr8 (189-228)||(14418396-14418435)
chr8 (1-59)||(37681294-37681350)
chr8 (188-239)||(41836415-41836466)
chr8 (1-77)||(33383628-33383704)
chr8 (1-56)||(25231374-25231427)
chr8 (1-64)||(36710411-36710472)
chr8 (1-64)||(33883125-33883185)
chr8 (1-37)||(5538546-5538582)
chr8 (4-56)||(14349290-14349342)
chr8 (1-83)||(29612959-29613041)
chr8 (1-37)||(12583328-12583364)
chr8 (48-96)||(14627589-14627637)
chr8 (1-37)||(43681661-43681697)
[»] chr3 (25 HSPs)
chr3 (1-196)||(50096825-50097019)
chr3 (1-112)||(9155053-9155164)
chr3 (1-112)||(9158235-9158346)
chr3 (117-239)||(22626434-22626554)
chr3 (118-241)||(39563633-39563756)
chr3 (117-239)||(11138692-11138812)
chr3 (175-239)||(46731496-46731560)
chr3 (1-77)||(10557813-10557889)
chr3 (19-77)||(19194008-19194067)
chr3 (171-239)||(13979488-13979557)
chr3 (1-132)||(18551893-18552025)
chr3 (56-133)||(36036772-36036850)
chr3 (4-64)||(32287081-32287139)
chr3 (1-55)||(52309385-52309435)
chr3 (1-37)||(16244278-16244314)
chr3 (97-156)||(20536437-20536496)
chr3 (1-73)||(52200279-52200347)
chr3 (1-64)||(10881862-10881921)
chr3 (1-64)||(10902322-10902381)
chr3 (1-43)||(25260985-25261027)
chr3 (3-55)||(47051877-47051926)
chr3 (1-56)||(55034684-55034735)
chr3 (1-64)||(10960181-10960242)
chr3 (1-64)||(10963688-10963749)
chr3 (1-37)||(41977406-41977442)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-141)||(7453-7593)
[»] chr5 (30 HSPs)
chr5 (1-141)||(17944837-17944977)
chr5 (104-238)||(11988974-11989108)
chr5 (117-239)||(33575091-33575212)
chr5 (4-129)||(35432242-35432373)
chr5 (42-132)||(9690989-9691080)
chr5 (42-112)||(33320725-33320795)
chr5 (118-241)||(26712465-26712588)
chr5 (118-241)||(26982203-26982326)
chr5 (117-224)||(15532322-15532429)
chr5 (117-224)||(15542504-15542611)
chr5 (119-239)||(22159746-22159866)
chr5 (119-239)||(7650067-7650185)
chr5 (119-239)||(34405850-34405968)
chr5 (1-62)||(18239279-18239340)
chr5 (1-77)||(22036126-22036202)
chr5 (121-239)||(14616556-14616672)
chr5 (1-77)||(22039352-22039428)
chr5 (4-84)||(36357012-36357093)
chr5 (23-77)||(36700728-36700783)
chr5 (19-77)||(43103683-43103742)
chr5 (1-73)||(21332451-21332519)
chr5 (1-64)||(7271315-7271374)
chr5 (5-77)||(13423294-13423366)
chr5 (1-55)||(28787096-28787146)
chr5 (1-36)||(32838188-32838223)
chr5 (1-64)||(4099302-4099361)
chr5 (4-37)||(21335473-21335506)
chr5 (23-79)||(32228164-32228221)
chr5 (82-133)||(26338209-26338261)
chr5 (7-64)||(33552418-33552471)
[»] chr4 (36 HSPs)
chr4 (1-141)||(24605010-24605149)
chr4 (1-133)||(7394633-7394765)
chr4 (97-239)||(26062793-26062937)
chr4 (97-239)||(2541886-2542027)
chr4 (1-199)||(26060653-26060849)
chr4 (1-110)||(26703247-26703356)
chr4 (42-133)||(37176863-37176955)
chr4 (8-63)||(2436966-2437021)
chr4 (119-239)||(647329-647447)
chr4 (119-239)||(650601-650719)
chr4 (97-196)||(11649305-11649405)
chr4 (1-77)||(54900045-54900121)
chr4 (1-64)||(53094796-53094859)
chr4 (4-63)||(19859280-19859337)
chr4 (188-239)||(11649426-11649477)
chr4 (193-239)||(26060589-26060635)
chr4 (22-78)||(22884191-22884248)
chr4 (22-78)||(22935855-22935912)
chr4 (3-61)||(19864172-19864228)
chr4 (1-64)||(12786409-12786468)
chr4 (1-64)||(3797590-3797650)
chr4 (1-64)||(15811911-15811971)
chr4 (1-55)||(19821010-19821060)
chr4 (1-38)||(40795321-40795358)
chr4 (1-64)||(56199140-56199200)
chr4 (1-37)||(44165099-44165135)
chr4 (1-36)||(48415291-48415326)
chr4 (1-64)||(3720647-3720706)
chr4 (117-182)||(12172031-12172095)
chr4 (1-55)||(19827717-19827767)
chr4 (1-38)||(56195836-56195873)
chr4 (1-37)||(5681736-5681772)
chr4 (1-55)||(15404857-15404908)
chr4 (1-37)||(35510301-35510337)
chr4 (5-37)||(49270993-49271025)
chr4 (1-37)||(52006297-52006333)
[»] chr2 (26 HSPs)
chr2 (1-141)||(30719991-30720131)
chr2 (97-239)||(23673446-23673588)
chr2 (100-239)||(36326928-36327067)
chr2 (117-239)||(31626551-31626673)
chr2 (119-239)||(40017981-40018099)
chr2 (143-241)||(13710070-13710169)
chr2 (119-239)||(16294900-16295019)
chr2 (117-224)||(31528406-31528513)
chr2 (1-77)||(35077184-35077260)
chr2 (1-77)||(35080442-35080518)
chr2 (1-77)||(16881561-16881637)
chr2 (1-77)||(17039251-17039327)
chr2 (171-241)||(32575859-32575932)
chr2 (1-64)||(43723979-43724038)
chr2 (1-55)||(25138704-25138754)
chr2 (1-69)||(6276933-6277002)
chr2 (1-69)||(33749695-33749763)
chr2 (1-37)||(5666819-5666855)
chr2 (1-55)||(31427317-31427368)
chr2 (1-73)||(15470728-15470796)
chr2 (1-73)||(25820620-25820688)
chr2 (19-56)||(38132791-38132829)
chr2 (1-64)||(36808219-36808279)
chr2 (1-64)||(45457431-45457491)
chr2 (1-37)||(13971678-13971714)
chr2 (1-37)||(38460593-38460629)
[»] scaffold0363 (2 HSPs)
scaffold0363 (119-241)||(133-253)
scaffold0363 (189-228)||(283-322)
[»] scaffold0043 (2 HSPs)
scaffold0043 (42-133)||(13818-13910)
scaffold0043 (42-133)||(11475-11567)
[»] scaffold0045 (2 HSPs)
scaffold0045 (42-129)||(90344-90432)
scaffold0045 (1-37)||(90080-90116)
[»] scaffold0440 (1 HSPs)
scaffold0440 (121-239)||(9865-9982)
[»] scaffold0567 (1 HSPs)
scaffold0567 (180-239)||(5995-6054)
[»] scaffold0401 (1 HSPs)
scaffold0401 (42-112)||(4507-4577)
[»] scaffold0083 (1 HSPs)
scaffold0083 (42-112)||(42849-42919)
[»] scaffold0264 (1 HSPs)
scaffold0264 (117-239)||(24307-24426)
[»] scaffold0884 (1 HSPs)
scaffold0884 (1-77)||(4300-4376)
[»] scaffold0996 (1 HSPs)
scaffold0996 (1-64)||(1694-1755)
[»] scaffold1657 (1 HSPs)
scaffold1657 (1-70)||(237-306)
[»] scaffold2073 (1 HSPs)
scaffold2073 (1-64)||(639-700)
[»] scaffold2047 (1 HSPs)
scaffold2047 (19-77)||(563-622)
[»] scaffold0146 (1 HSPs)
scaffold0146 (19-77)||(36107-36166)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-77)||(157365-157424)
[»] scaffold0352 (2 HSPs)
scaffold0352 (97-174)||(2719-2797)
scaffold0352 (186-239)||(2794-2847)
[»] scaffold0330 (1 HSPs)
scaffold0330 (1-46)||(14235-14280)
[»] scaffold1063 (1 HSPs)
scaffold1063 (1-64)||(2784-2843)
[»] scaffold0080 (1 HSPs)
scaffold0080 (1-64)||(27408-27467)
[»] scaffold0496 (1 HSPs)
scaffold0496 (11-56)||(10153-10198)
[»] scaffold0757 (1 HSPs)
scaffold0757 (1-66)||(5647-5708)
[»] scaffold0520 (1 HSPs)
scaffold0520 (1-37)||(1315-1351)
[»] scaffold0500 (1 HSPs)
scaffold0500 (176-224)||(2710-2758)
[»] scaffold0063 (1 HSPs)
scaffold0063 (176-224)||(7173-7221)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 34066579 - 34066344
Alignment:
Q  5 aagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgt 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||| ||||||||    
T  34066579 aagtgtactaaaa-tatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcggaaaaaactttaaaataaaggatgt 34066481  T
Q  105 attaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaagtatg 204  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  34066480 attaaattcaagggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaagtatg 34066381  T
Q  205 gttaagacattcgaatcctccgaagttctcctatgat 241  Q
    |||||||| ||||||||||||||||||||||||||||    
T  34066380 gttaagaccttcgaatcctccgaagttctcctatgat 34066344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 8435475 - 8435280
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||||||| ||||    
T  8435475 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgcatccacatggactgtttcaatttctactctgcaaaagcgttaaaataaagg 8435376  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagaga 196  Q
    |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||  | ||||||| ||||||  | | |||||||||||||||||    
T  8435375 atgtattaaattcaagagtgccctaggcagttgagttgatttttgtaacataaacataataaaaacaataaaagttggtttttagaaaattagaga 8435280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 22456499 - 22456736
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| || |||||| ||||    
T  22456499 tagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcagcaaaaacgataaaataaagg 22456598  T
Q  101 atgtattaaattc-aggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaa 199  Q
    ||||||||||||| |  | |||| |||||||||| |||| ||||| ||| |||||| | |||||||| ||||||  |||||| | | |||||| ||||||    
T  22456599 atgtattaaattcaaaagttgccataggcagttggattggtttttataa-ataaactatttaaaaacgataaaagcttggttct-ggaaattaaagagaa 22456696  T
Q  200 gtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
      ||||| ||||| ||||||||||||||||||||||||||    
T  22456697 aaatggtcaagaccttcgaatcctccgaagttctcctatg 22456736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 16190222 - 16190423
Alignment:
Q  40 ataagttcgtatccacagggactgtt-tcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattcaggggtgccctaggcagttgaattg 138  Q
    |||| |||||||||||  |||||||| | ||||| || | | ||||| ||||||||| ||||||||||||||||||  ||||||||||| | |||| |||    
T  16190222 ataaattcgtatccacgaggactgttgttaatttttattcgacaaaaacgttaaaataaaggatgtattaaattcaatggtgccctaggaaattgagttg 16190321  T
Q  139 atttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaagtatggttaagacattcgaatcctccgaagttctcctat 238  Q
    || ||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  16190322 atgtttgtaacataaacgaattaaaaacaataaaga-ttggttttagaaaattaaagagaagtatggttaagaccttcgaatcctccgaagttctcctat 16190420  T
Q  239 gat 241  Q
    |||    
T  16190421 gat 16190423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 49148133 - 49147899
Alignment:
Q  5 aagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgt 104  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| ||||||||    
T  49148133 aagtgtactaaaaataaatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcagcaaaaacgttaaaataaaggatgt 49148034  T
Q  105 attaaattc-aggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagag-aagta 202  Q
    ||||||||| |  | ||||||||||||||| |||| ||||| ||| |||||  | || ||||| ||||||  |||||| | | |||||| |||| ||  |    
T  49148033 attaaattcaaaagttgccctaggcagttggattggtttttataa-ataaattattttaaaacgataaaagcttggttct-ggaaattaaagagaaaaaa 49147936  T
Q  203 tggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  49147935 tggtcaagaccttcgaatcctccgaagttctcctatg 49147899  T

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Target: chr1; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 22453189 - 22453418
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||| ||||||||| ||||    
T  22453189 tagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcatatccacagggactgtttcaatttctactcagcaaaaacgttaaaataaagg 22453288  T
Q  101 atgtattaaattc-aggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaa 199  Q
    ||||||||||| | |  | | || |||||||||| |||| ||||| ||| |||||| | |||||||| ||||||  |||||  | | |||||| ||||||    
T  22453289 atgtattaaatacaaaagtttccataggcagttggattggtttttataa-ataaactatttaaaaacgataaaagcttggtact-ggaaattaaagagaa 22453386  T
Q  200 gtatggttaagacattcgaatcctccgaagtt 231  Q
      ||||| ||||| ||||||||||||||||||    
T  22453387 aaatggtcaagaccttcgaatcctccgaagtt 22453418  T

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Target: chr1; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 23990141 - 23990325
Alignment:
Q  1 tagcaagtgtactaaaaa-tatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaag 99  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||  || ||| |||||||||| | |||| |||||||||||||| |||    
T  23990141 tagcaagtgtactaaaaaatatatcgaagtaatcaaatttataagttcgtatcca--ggaactatttcaatttcaaattggaaaaagcgttaaaataaag 23990238  T
Q  100 gatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttaga 186  Q
    ||||||||||||||||   ||| |||||||||||| || |||||||||||||| ||| ||||||||| |||||| || |||||||||    
T  23990239 gatgtattaaattcagtaatgctctaggcagttgagttaatttttgtaacatatacggattaaaaacaataaaagataggttttaga 23990325  T

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Target: chr1; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 22447955 - 22448065
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||| ||||||||| ||||    
T  22447955 tagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcatatccacagggactgtttcaatttctactcagcaaaaacgttaaaataaagg 22448054  T
Q  101 atgtattaaat 111  Q
    |||||||||||    
T  22448055 atgtattaaat 22448065  T

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Target: chr1; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 1936770 - 1936628
Alignment:
Q  100 gatgtattaaattca--ggggtgccctaggcagttgaattgatttttgtaacataaac-gaattaaaaactataaaaaattggttttagaaaattagaga 196  Q
    |||||||||||||||  ||| || ||||||||||||| |||||| ||||| ||||||| |||||||||||  |||||  |||||||||||||||||||||    
T  1936770 gatgtattaaattcaatgggttgacctaggcagttgagttgattgttgtatcataaactgaattaaaaacggtaaaattttggttttagaaaattagaga 1936671  T
Q  197 gaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  1936670 gaagtatggttaagaccttcgaatcctccgaagttctcctatg 1936628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 17618868 - 17618981
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||| |||     
T  17618868 tagcaaatgtactaaaaatatatcgaagtaataaaatttataagttcatattcacagggactgtttcaatttctacttgacaaaaacgttaaaataaaga 17618967  T
Q  101 atgtattaaattca 114  Q
    || |||||||||||    
T  17618968 atatattaaattca 17618981  T

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Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 39546387 - 39546244
Alignment:
Q  97 aaggatgtattaaattcaggggt-gccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaa-attaga 194  Q
    ||||||||||||||||||   || |||||||||||||| |||| |||||||||| |||||| |   ||||| ||||||  ||||||||| ||| ||||||    
T  39546387 aaggatgtattaaattcaattgttgccctaggcagttggattggtttttgtaacgtaaacgcaaataaaacaataaaag-ttggttttaaaaatattaga 39546289  T
Q  195 gagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||    
T  39546288 gagaagtatggttaagaccttcgaatcctccgaagttctcatatg 39546244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 3087513 - 3087619
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcg-ttaaaatgaaggat 102  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||| |||| ||||||| ||||||||||| |||||  || ||||||| ||||||    
T  3087513 caagtgtactaaaa-tatatcgaagtaataaaatttataagtttgtatccgcaggaactgttttaatttctacttagcaaagacgtttaaaattaaggat 3087611  T
Q  103 gtattaaa 110  Q
    || |||||    
T  3087612 gtgttaaa 3087619  T

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Target: chr1; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 32506000 - 32506098
Alignment:
Q  141 ttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||| ||||||||||||||||||||| || |||| |||||||| |||| |||| |||||||| |||||||||| ||||||||||||||||||||||||||    
T  32506000 ttttctaacataaacgaattaaaaacaat-aaaagttggttttaagaatattatagagaagtgtggttaagaccttcgaatcctccgaagttctcctatg 32506098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 10765039 - 10764921
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    |||||||||||||||| |||  |||||||||||||||| |   ||||| ||||||  |||||||| |||| |||||||||||||||||||||||| ||||    
T  10765039 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcg 10764943  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||| ||||||||||||||    
T  10764942 aatcctctgaagttctcctatg 10764921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 13493382 - 13493264
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    |||||||||||||||| |||  |||||||||||||||| |   ||||| ||||||  |||||||| |||| |||||||||||||||||||||||| ||||    
T  13493382 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcg 13493286  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||| ||||||||||||||    
T  13493285 aatcctctgaagttctcctatg 13493264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 13496104 - 13495989
Alignment:
Q  122 cctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcgaat 220  Q
    |||||||||||||||||  |||||||||||||||| |   ||||| || |||| ||| |||| |||| |||||||||||||||||||||||| || ||||    
T  13496104 cctaggcagttgaattg--ttttgtaacataaacgtaaataaaacaat-aaaagttgattttaagaatattagagagaagtatggttaagacctttgaat 13496008  T
Q  221 cctccgaagttctcctatg 239  Q
    |||||||||||||||||||    
T  13496007 cctccgaagttctcctatg 13495989  T

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Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 27282283 - 27282351
Alignment:
Q  172 aaaattggtttta-gaaaattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  27282283 aaaattggttttatgaatattagagagaagtatggttaagactttcgaattctccgaagttctcctatg 27282351  T

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Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25662861 - 25662937
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  25662861 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatccacatggactgtttcaacttctact 25662937  T

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Target: chr1; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28138614 - 28138690
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  28138614 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctact 28138690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28141864 - 28141940
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  28141864 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctact 28141940  T

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Target: chr1; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 14159085 - 14159144
Alignment:
Q  19 tatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  14159085 tatatcgaagtaataaaatttataagattcgtatctacagggactgtttcaacttctact 14159144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 15297469 - 15297339
Alignment:
Q  100 gatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaa 199  Q
    ||||||||||||||| || ||||||| ||||||| |||  |||||||||||  ||| | || ||||| ||||||| |||||| | |||| ||| ||||||    
T  15297469 gatgtattaaattcaaggttgccctaagcagttggattagtttttgtaaca--aactatttgaaaacgataaaaacttggttctggaaa-ttaaagagaa 15297373  T
Q  200 gtatggttaagacattcgaatcctccgaagttct 233  Q
     |||| ||||||| |||||||||||||| |||||    
T  15297372 atatgattaagaccttcgaatcctccgatgttct 15297339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21911050 - 21911126
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||| |||||||||| |||| |||||||||||| |||||||||||| |||||||    
T  21911050 tagcaagtgtactaact-tatatcgaagaaataaaatttgtaagattcgtatccacatggactgtttcaacttctact 21911126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 21153399 - 21153269
Alignment:
Q  97 aaggatgtattaaattcaggggtgccctaggcagttgaatt-gatttttgtaacataaacgaattaaaaactat-aaaaaattggttttagaaaattaga 194  Q
    |||||||||||||||| | || ||||||||||||||| ||| | |||||||||||| |||  ||| ||||| || |||   |||||||||| ||||||      
T  21153399 aaggatgtattaaatttatggttgccctaggcagttggattagttttttgtaacattaac-tatttaaaacaatcaaagctttggttttag-aaattaat 21153302  T
Q  195 gagaagtatggttaagacattcgaatcctccga 227  Q
    ||||| |||||||||||| ||||||||||||||    
T  21153301 gagaaatatggttaagaccttcgaatcctccga 21153269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2405867 - 2405808
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||||||| |||||||||||||||    ||||||||||||||||  |||||||    
T  2405867 tagcaagtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgt 2405808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34732112 - 34732157
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagtt 46  Q
    |||||||||||||||||||  | |||||||||||||||||||||||    
T  34732112 tagcaagtgtactaaaaatgaaccgaagtaataaaatttataagtt 34732157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49852904 - 49852940
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  49852904 tagcaagtgtactaaaaatgtatcgaagtaataaaat 49852940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45941773 - 45941738
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaa 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45941773 tagcaagtgtactaaaaatgtatcgaagtaataaaa 45941738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21110924 - 21110960
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||||||||||||  ||||||||||||||||    
T  21110924 tagcaagtgtactaaaaatgcatcgaagtaataaaat 21110960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 23313266 - 23313504
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  23313266 tagcaagtgtactaaaaatatatcgaaataataaaatttataagttcatatccacagggactgtttcaatttctactcggcataagcgttaaaataaagg 23313365  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaag 200  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  23313366 atgtattaaattcaagggtgccctaggtagttgaattgatttttgtaacataaacgaattaaaaacaataaaagaatggttttagaaaattagagagaag 23313465  T
Q  201 tatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||||||||||| || |||||||||||||||||||||||    
T  23313466 tatggttaagacctttgaatcctccgaagttctcctatg 23313504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 23108228 - 23107989
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaa-g 99  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||| ||||  ||| |||||||||||||||||||| | ||||||| ||||||| || |    
T  23108228 tagcaactgtactaaaaatatatcaaagtaataaaatttataagtttgtatttacatggactgtttcaatttctactcgacaaaagccttaaaataaaag 23108129  T
Q  100 gatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaa 199  Q
    |||||||| |||||| || || ||||| ||||||| ||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  23108128 gatgtatttaattcaaggatgtcctagacagttgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaa 23108029  T
Q  200 gtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
     | |||||||||| |||||||| ||||||| |||||||||    
T  23108028 atgtggttaagaccttcgaatcatccgaagctctcctatg 23107989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 22083205 - 22083345
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  22083205 tagcaagtgtactaaaattatatcgaagcaataaaatttataagttcgtatccacagggactgtttcaatttctactcggcaaaagcattaaaataaagg 22083304  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatt 141  Q
    || |||||||||||  |||||||||||||||||| ||||||    
T  22083305 atatattaaattcaatggtgccctaggcagttgagttgatt 22083345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 3862007 - 3862150
Alignment:
Q  97 aaggatgtattaaattcaggggtgccctaggcagttgaattgatttt-tgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagag 195  Q
    ||||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||||  ||||||||| |||||| |||||||||| ||||||||||    
T  3862007 aaggatgtattaaattcaatgatgccctaggcagttcaattgattttttgtaacataaactgattaaaaacaataaaagattggttttataaaattagag 3862106  T
Q  196 agaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||    
T  3862107 agaagtatgattaagaccttcgaatccttcgaagttctcctatg 3862150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 16547321 - 16547229
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaa-ttcaggggtgccctaggcagttg 133  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||| || |||| |||||||||||||||    
T  16547321 aagttcgtatccacaaggattgtttcaatttctactcggcaaaagcgttaaaataaaggatgtattaaatttaagggttgccctaggcagttg 16547229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 16618341 - 16618433
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaa-ttcaggggtgccctaggcagttg 133  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||| || |||| |||||||||||||||    
T  16618341 aagttcgtatccacaaggattgtttcaatttctactcggcaaaagcgttaaaataaaggatgtattaaatttaagggttgccctaggcagttg 16618433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 17152273 - 17152181
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattca-ggggtgccctaggcagttg 133  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||| |||||||||||||||    
T  17152273 aagtttgtatccacagagactgtttcaatttctactcggcaaaagcgttaaaataaaggatgtattaaatttatgggttgccctaggcagttg 17152181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 36843037 - 36843181
Alignment:
Q  97 aaggatgtattaaattcaggggt--gccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttta-gaaaattag 193  Q
    ||||||||||||||||||  |||  |||||||||||||| |||| ||||| |||  |||||| |   ||||| ||||||  ||||||||| ||| |||||    
T  36843037 aaggatgtattaaattcaatggtttgccctaggcagttggattggtttttataaagtaaacgtaaataaaacaataaaag-ttggttttatgaatattag 36843135  T
Q  194 agagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  36843136 agagaagtatggttaagaccttcgaatcctccgaagttctcctatg 36843181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 33313118 - 33312996
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacg-aattaaaaactataaaaaattggttttagaaaattagagagaagtatggttaagacatt 215  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||||||  |||||  ||||||||||||||||  |||||||  ||||||||| | ||    
T  33313118 ggtgccctaggcagttgagttgatttt-gtaacataaacggaattaaaaataataaaggattggttttagaaaatctgagagaaaaatggttaagtcctt 33313020  T
Q  216 cgaatcctccgaagttctcctatg 239  Q
    ||||||||| |||| |||||||||    
T  33313019 cgaatcctctgaagctctcctatg 33312996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 36222431 - 36222552
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacatt 215  Q
    |||||||||||||||||| ||||||||  ||||||||||  ||||||||| |  ||| ||||||||| |||| ||| |||||||||||||||||| | ||    
T  36222431 ggtgccctaggcagttgagttgattttc-taacataaactgattaaaaacaaagaaagattggtttttagaagatt-gagagaagtatggttaagtcctt 36222528  T
Q  216 cgaatcctccgaagttctcctatg 239  Q
    ||||||||||||||||||||||||    
T  36222529 cgaatcctccgaagttctcctatg 36222552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 6967267 - 6967149
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    |||||||||||||||| |||  |||||||||||||||| |   ||||| ||||||  |||||||| |||| |||||||||||||||||||||||| ||||    
T  6967267 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcg 6967171  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||| ||||||||||||||    
T  6967170 aatcctctgaagttctcctatg 6967149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 23759730 - 23759852
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt--agaaaattagagagaagtatggttaagacat 214  Q
    |||||||||||||||||| |||||||  |||||||||||  ||||||||| ||||| ||||||||||  |||||||  |||||||||||||||||| | |    
T  23759730 ggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggtttttaagaaaatc-gagagaagtatggttaagtcct 23759827  T
Q  215 tcgaatcctccgaagttctcctatg 239  Q
    ||||||||||| ||| |||||||||    
T  23759828 tcgaatcctccaaagctctcctatg 23759852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 17863220 - 17863338
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    ||||||||||||||||  ||  |||||||||||||||| |   ||||| ||||||  |||||||| |||| |||||||||||||||||||||||| ||||    
T  17863220 tgccctaggcagttgagctg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcg 17863316  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||| ||||||||||||||    
T  17863317 aatcctctgaagttctcctatg 17863338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 9765945 - 9765803
Alignment:
Q  97 aaggatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacg-aattaaaaactataaaaaattggtttta-gaaaattaga 194  Q
    ||||||||||||||||   || ||||||||||||||| |||| ||||| |||  |||||  || |||||  ||  |||| ||||||||| ||| ||||||    
T  9765945 aaggatgtattaaatttctggttgccctaggcagttggattggtttttataaagtaaacataaataaaa--taataaaagttggttttaagaatattaga 9765848  T
Q  195 gagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||    
T  9765847 gagaagtatggttaagaccttcgaatcctctgaagttctcctatg 9765803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 294929 - 294866
Alignment:
Q  175 attggttttagaaaattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||    
T  294929 attggttttagaaaatt-gagagaagtatggttaagtctttcgaatcctccgaagttctcctatg 294866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 11279614 - 11279496
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacatt 215  Q
    |||||||||||||||||| |||||||| |||||||||||  ||||||||| |  ||| ||||||||| |||| ||| |||||||||||||||||| | ||    
T  11279614 ggtgccctaggcagttgagttgatttt-gtaacataaactgattaaaaacgaataaagattggtttttagaagatt-gagagaagtatggttaagtcctt 11279517  T
Q  216 cgaatcctccgaagttctcct 236  Q
    |||||| | ||||||||||||    
T  11279516 cgaatctttcgaagttctcct 11279496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 26808520 - 26808575
Alignment:
Q  22 atcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  26808520 atcgaagtaataaattttataagttcgtatccacagagactgtttcaatttctact 26808575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 17866479 - 17866597
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    ||||||||||||||||  ||  |||||||||||||||| |   ||||| ||||||  |||||||| |||| ||||||||||||||||||| |||| ||||    
T  17866479 tgccctaggcagttgagctg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggtttagaccttcg 17866575  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||| ||||||||||||||    
T  17866576 aatcctctgaagttctcctatg 17866597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1636703 - 1636779
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  1636703 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctact 1636779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5189466 - 5189542
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   ||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||    
T  5189466 tagcaagtgtactaact-tatatcgaagtaataaactttataagattcgtatccacagggactgtttcaacttctact 5189542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24423217 - 24423286
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaat 70  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||| |||||| | | |||||||||    
T  24423217 tagcaagtgtactaaaaatacattgaagtaataaaatttataagttcgtctccacatgaattgtttcaat 24423286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44672798 - 44672874
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  44672798 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctact 44672874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 46846434 - 46846556
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaac-gaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacat 214  Q
    |||||||||||||||||| |||| || | ||  |||||| || | |||||| |||||| ||||||||| |||||||| |||||||||||||||||| | |    
T  46846434 ggtgccctaggcagttgagttgaattct-tattataaactgactaaaaaacaataaaagattggtttttagaaaatt-gagagaagtatggttaagtcct 46846531  T
Q  215 tcgaatcctccgaagttctcctatg 239  Q
    ||||||||||||||||||| |||||    
T  46846532 tcgaatcctccgaagttcttctatg 46846556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 20436992 - 20436933
Alignment:
Q  19 tatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  20436992 tatatcgaagtaataaaatttataacattcgtatccacagagactgtttcaatttctact 20436933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 24783479 - 24783410
Alignment:
Q  171 aaaaattggtttta-gaaaattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||| ||||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||| ||||    
T  24783479 aaaagttggttttaagaatattagagagaagtatggttaagacctttgaatcctccgaagttctcatatg 24783410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 1633475 - 1633534
Alignment:
Q  19 tatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||||    
T  1633475 tatatcgaagtaataaaatttataagattcgtttccaaagggactgtttcaacttctact 1633534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 5241959 - 5242001
Alignment:
Q  22 atcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  5241959 atcgaagtaataaaatttataagtttgtatccacagggactgt 5242001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 22952888 - 22952824
Alignment:
Q  6 agtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaat 70  Q
    ||||||||||||||  ||||||||||||||||||||||||| |  |||||| ||| |||||||||    
T  22952888 agtgtactaaaaatgcatcgaagtaataaaatttataagtttgcctccacatggattgtttcaat 22952824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17731163 - 17731104
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||||||||  ||||||||||||||    ||||||||||||||||| |||||||    
T  17731163 tagcaagtgtactaaaaatgcatcgaagtaataaa----ataagttcgtatccacaaggactgt 17731104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1960343 - 1960306
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1960343 tagcaagtgtactaaaaatatatcaaagtaataaaatt 1960306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10345519 - 10345469
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccac 55  Q
    ||||||||||||||||||| |||||||||||||||    ||||||||||||||||    
T  10345519 tagcaagtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccac 10345469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 11397831 - 11397891
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||||||||  ||||||||||||||||   |||||||||||||||  |||||||    
T  11397831 tagcaagtgtactaaaaatgcatcgaagtaataaaat---taagttcgtatccacgaggactgt 11397891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 48645810 - 48645742
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttc 73  Q
    |||||||||||||||||||  ||||||||||||||    ||||||||||||||||  ||||||| | ||||||    
T  48645810 tagcaagtgtactaaaaatgcatcgaagtaataaa----ataagttcgtatccacgaggactgtgttaatttc 48645742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 35961439 - 35961384
Alignment:
Q  5 aagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||| |||||||||||||||    ||||||||||||||||  |||||||    
T  35961439 aagtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgt 35961384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4595780 - 4595816
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||||||||||||  ||||||||||||||||    
T  4595780 tagcaagtgtactaaaaatgcatcgaagtaataaaat 4595816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 6214132 - 6214180
Alignment:
Q  68 aatttctacttggcaaaagcgttaaaatgaaggatgtattaaattcagg 116  Q
    |||||||||| | |||||| |||||||| ||| ||||||||||||||||    
T  6214132 aatttctactcgacaaaagtgttaaaataaagaatgtattaaattcagg 6214180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 26075463 - 26075495
Alignment:
Q  22 atcgaagtaataaaatttataagttcgtatcca 54  Q
    |||||| ||||||||||||||||||||||||||    
T  26075463 atcgaaataataaaatttataagttcgtatcca 26075495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 26099250 - 26099282
Alignment:
Q  22 atcgaagtaataaaatttataagttcgtatcca 54  Q
    |||||| ||||||||||||||||||||||||||    
T  26099250 atcgaaataataaaatttataagttcgtatcca 26099282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26557842 - 26557806
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    ||||||||||||||||||  |||||||||||||||||    
T  26557842 tagcaagtgtactaaaaacgtatcgaagtaataaaat 26557806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33844391 - 33844427
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||| |||||||| |||||||||||||||||    
T  33844391 tagcaagtgtgctaaaaatgtatcgaagtaataaaat 33844427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 16883903 - 16883677
Alignment:
Q  13 taaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  16883903 taaaaatatatcgaagtaataaaatttataagttcgtatccgcagggactgtttcaatttctactcggtaaaagcgttaaaataaaggatgtattaaatt 16883804  T
Q  113 caggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaagtatggttaagac 212  Q
    || |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  16883803 caagggttccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagac 16883704  T
Q  213 attcgaatcctccgaagttctcctatg 239  Q
    ||||||||||| |||||||||||||||    
T  16883703 attcgaatccttcgaagttctcctatg 16883677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 20527167 - 20527407
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  |||||||||||||| || |    
T  20527167 tagcaagtgtactacaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcgatttctactcgataaaagcgttaaaataaatg 20527266  T
Q  101 atgtattaaattc-aggggtgccctaggcagttgaattgatttttgtaacataaac-gaattaaaaactataaaaaattggtttt-agaaaattagagag 197  Q
    ||||||||||||| | || ||||||||||||||||||||||||||||||| |||||  || ||||||| || |||| |||||||| |||| |||||||||    
T  20527267 atgtattaaattcaaaggttgccctaggcagttgaattgatttttgtaacgtaaacataaataaaaacaat-aaaagttggttttaagaatattagagag 20527365  T
Q  198 aagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  20527366 aagtatggttaagaccttcgaatcctccgaagttctcctatg 20527407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 11183842 - 11184037
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  11183842 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcatatccacagggactgtttcaatttctacttggaaaaaacgttaaaataaagg 11183941  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagaga 196  Q
    |||||||||||||| | || |||||||||||||| ||||||||||||||||||||| | ||||||| ||||||  | | |||||||||||||||||    
T  11183942 atgtattaaattcaagagttccctaggcagttgagttgatttttgtaacataaacgtaataaaaacaataaaagttggtttttagaaaattagaga 11184037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12980499 - 12980737
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||||||| ||||    
T  12980499 tagcaagtgtactaaaaataaattgaagtaataaaatttataagttcgtatccacatggactgtttcaatttctactcagcaaaaacgttaaaataaagg 12980598  T
Q  101 atgtattaaattc-aggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaa 199  Q
    ||||||||||||| |  | ||||||||||||||| |||| ||||| ||| |||||| | |||||||| ||||||  |||||| | |||||||| ||||||    
T  12980599 atgtattaaattctaaagttgccctaggcagttggattggtttttataa-ataaactatttaaaaacgataaaagcttggttct-gaaaattaaagagaa 12980696  T
Q  200 gtatggttaagacattcgaatcctccgaagttctcctatga 240  Q
      ||||| ||||| |||||||||||||||||||||||||||    
T  12980697 aaatggtcaagaccttcgaatcctccgaagttctcctatga 12980737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12983386 - 12983624
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| ||||||||| ||||    
T  12983386 tagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcgtatccacaggggctgtttcaatttctactcagcaaaaacgttaaaataaagg 12983485  T
Q  101 atgtattaaattc-aggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaa 199  Q
    ||||||||||||| |  | ||||||||||||||| |||| ||||| ||| |||||| | |||||||| ||||||  |||||| | | |||||| ||||||    
T  12983486 atgtattaaattcaaatgttgccctaggcagttggattggtttttataa-ataaactatttaaaaacgataaaagcttggttct-ggaaattaaagagaa 12983583  T
Q  200 gtatggttaagacattcgaatcctccgaagttctcctatga 240  Q
      ||||| ||||| |||||||||||||||||||||||||||    
T  12983584 aaatggtcaagaccttcgaatcctccgaagttctcctatga 12983624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 28118189 - 28118049
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  28118189 tagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcggcaaaagcgttaaaataaagg 28118090  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatt 141  Q
    || |||||||||||  |||||||||||||||||| ||||||    
T  28118089 atatattaaattcaatggtgccctaggcagttgagttgatt 28118049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 9313551 - 9313687
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||||     
T  9313551 caagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacaaggactgtttcaatttctactcagcaaaagcgttaaaataaaggata 9313650  T
Q  104 tattaaattcaggggtgccctaggcagttgaattgatt 141  Q
    |||||||||||  || ||||||||||||||| ||||||    
T  9313651 tattaaattcaatgg-gccctaggcagttgagttgatt 9313687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 15578677 - 15578810
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  15578677 tagcaagtgtattaaaaatatatcgaaggaataaaatttataagttcgtatctacagggactatttcaatttctactcggcaaaagcgttaaaataaagg 15578776  T
Q  101 atgtattaaattca-ggggtgccctaggcagttg 133  Q
    |||||||||||| | ||| |||||||||||||||    
T  15578777 atgtattaaatttatgggttgccctaggcagttg 15578810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 19664767 - 19664909
Alignment:
Q  97 aaggatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagaga 196  Q
    |||||||||||||||||| || ||||||||||||||| |||| | ||||||| ||||||| ||||||||| ||||||  ||||||| |||||||||||||    
T  19664767 aaggatgtattaaattcaaggttgccctaggcagttggattggtatttgtaaaataaacggattaaaaacaataaaagtttggtttaagaaaattagaga 19664866  T
Q  197 gaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    || ||||||||||||| ||||||||||||||||||||||||||    
T  19664867 gatgtatggttaagaccttcgaatcctccgaagttctcctatg 19664909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16731685 - 16731609
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16731685 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctact 16731609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 15540713 - 15540574
Alignment:
Q  97 aaggatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagaga 196  Q
    |||||||||||||||||| || | |||||||||||||| ||||||||  ||| ||||| | ||||||||| ||||||  || |||||||||||||| |||    
T  15540713 aaggatgtattaaattcaaggtttccctaggcagttgagttgattttc-taaaataaagggattaaaaacaataaaagtttagttttagaaaattaaaga 15540615  T
Q  197 gaagtatggttaagacattcgaatcctccgaagttctccta 237  Q
    ||  |||||||||||| ||||||||||||||||||||||||    
T  15540614 gatttatggttaagaccttcgaatcctccgaagttctccta 15540574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 32427441 - 32427303
Alignment:
Q  100 gatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaa 199  Q
    ||||||||||||||| || |||||||| |||||| |||| | ||||||| ||||||||||||||||| || |||  |||||||||||||||||||||||     
T  32427441 gatgtattaaattcaaggttgccctag-cagttggattggtatttgtaaaataaacgaattaaaaacaatgaaagtttggttttagaaaattagagagat 32427343  T
Q  200 gtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    || || ||||||| || |||||||| ||||||||||||||    
T  32427342 gtttgattaagacctttgaatcctctgaagttctcctatg 32427303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 2773167 - 2773275
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||  |||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||   |||||||| ||||    
T  2773167 tagcaagtgtactaaaaatgaatcgaagtaatataatttataagttcgtatccactgggattgtttcaatttctactcggcaaagatgttaaaataaagg 2773266  T
Q  101 atgtattaa 109  Q
    |||| ||||    
T  2773267 atgtgttaa 2773275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 12747127 - 12747035
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattca-ggggtgccctaggcagttg 133  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||| |||||||||||||||    
T  12747127 aagttcgtatccacaaggactgtttcaatttctactcggcaaaagcgttaaaataaaggatgtattaaatttatgggttgccctaggcagttg 12747035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 15535199 - 15535058
Alignment:
Q  97 aaggatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagaga 196  Q
    |||||||||||||||||| || |||||||||||||||| |||||||| |||| | |||   ||||||||| ||||||  ||||||||| ||||||| ||     
T  15535199 aaggatgtattaaattcaaggttgccctaggcagttgagttgatttt-gtaaaacaaatagattaaaaacaataaaagtttggttttacaaaattaaagt 15535101  T
Q  197 gaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    || ||||||||||||| ||| |||||||||||||| |||||||    
T  15535100 gatgtatggttaagaccttcaaatcctccgaagttttcctatg 15535058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 20189192 - 20189301
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||  ||||||||||||| ||||   |||||| |||||||| ||||    
T  20189192 tagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgtatctatagaaactgtttcaatttatactccacaaaagagttaaaataaagg 20189291  T
Q  101 atgtattaaa 110  Q
    |||| |||||    
T  20189292 atgtgttaaa 20189301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 22146799 - 22146690
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||  ||||||||||||| ||||   |||||| |||||||| ||||    
T  22146799 tagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgtatctatagaaactgtttcaatttatactccacaaaagagttaaaataaagg 22146700  T
Q  101 atgtattaaa 110  Q
    |||| |||||    
T  22146699 atgtgttaaa 22146690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 28894281 - 28894372
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattca-ggggtgccctaggcagtt 132  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| | ||| ||||||||||||||    
T  28894281 aagttcgtatccacatggactgtttcaatttctactcggcaaaaacgttaaaataaaggatgtattaaatttatgggttgccctaggcagtt 28894372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 13017311 - 13017433
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt--agaaaattagagagaagtatggttaagacat 214  Q
    |||||||||||||||||| |||||||  |||||||||||  ||||||||| ||||| ||||||||||  |||||||| |||||||||||||||||| | |    
T  13017311 ggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggtttttcagaaaatt-gagagaagtatggttaagtcct 13017408  T
Q  215 tcgaatcctccgaagttctcctatg 239  Q
    ||||||||||| ||| |||||||||    
T  13017409 tcgaatcctccaaagctctcctatg 13017433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 30978333 - 30978455
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt--agaaaattagagagaagtatggttaagacat 214  Q
    |||||||||||||||||| |||||||  |||||||||||  ||||||||| ||||| ||||||||||  |||||||| |||||||||||||||||| | |    
T  30978333 ggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcct 30978430  T
Q  215 tcgaatcctccgaagttctcctatg 239  Q
    ||||||||||| ||| |||||||||    
T  30978431 tcgaatcctccaaagctctcctatg 30978455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 27649223 - 27649104
Alignment:
Q  120 gccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttta-gaaaattagagagaagtatggttaagacattcga 218  Q
    |||||||||||||| |||| ||||| ||||||||||| |    |||| ||||||  ||||||||| ||||||||||| |||||||||||||||| |||||    
T  27649223 gccctaggcagttggattggtttttataacataaacgtagatgaaacaataaaag-ttggttttaagaaaattagagcgaagtatggttaagaccttcga 27649125  T
Q  219 atcctccgaagttctcctatg 239  Q
    |||||||||||||||||||||    
T  27649124 atcctccgaagttctcctatg 27649104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 14790738 - 14790620
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    |||||||||||||||| |||  |||||||||||||||| |   ||||| ||||||  |||||||| |||| |||||||||||||||||||||||| ||||    
T  14790738 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcg 14790642  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||| ||||||||||||||    
T  14790641 aatcctctgaagttctcctatg 14790620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 14795766 - 14795648
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    |||||||||||||||| |||  |||||||||||||||| |   ||||| ||||||  |||||||| |||| |||||||||||||||||||||||| ||||    
T  14795766 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcg 14795670  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||| ||||||||||||||    
T  14795669 aatcctctgaagttctcctatg 14795648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 22221845 - 22221726
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacatt 215  Q
    |||||||||||||||||| |||||||  ||||  ||||| |||||||||| ||||| |||||||||| |||||||| |||||||| ||||||||| | ||    
T  22221845 ggtgccctaggcagttgagttgattta-gtaa--taaactaattaaaaacaataaagaattggtttttagaaaatt-gagagaagcatggttaagtcctt 22221750  T
Q  216 cgaatcctccgaagttctcctatg 239  Q
    |||||||||||||| |||||||||    
T  22221749 cgaatcctccgaagctctcctatg 22221726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 22247680 - 22247561
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacatt 215  Q
    |||||||||||||||||| |||||||  ||||  ||||| |||||||||| ||||| |||||||||| |||||||| |||||||| ||||||||| | ||    
T  22247680 ggtgccctaggcagttgagttgattta-gtaa--taaactaattaaaaacaataaagaattggtttttagaaaatt-gagagaagcatggttaagtcctt 22247585  T
Q  216 cgaatcctccgaagttctcctatg 239  Q
    |||||||||||||| |||||||||    
T  22247584 cgaatcctccgaagctctcctatg 22247561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 1838544 - 1838475
Alignment:
Q  171 aaaaattggtttta-gaaaattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1838544 aaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 1838475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 32704400 - 32704498
Alignment:
Q  141 ttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||||||||||||||| |   ||||| ||||||  |||||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  32704400 ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 32704498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 28111579 - 28111640
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||||||||||| |||||||    
T  28111579 tagcaagtgtactaaaactat--cgaagtaataaaatttataagttcgtatccacatggactgt 28111640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 965103 - 965027
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||    
T  965103 tagcaagtgtactaact-tatatcgaagtaataaaatttataaaattcgtattcacagggactgtttcaacttctact 965027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 28107530 - 28107584
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacaggga 60  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  28107530 caagtgtactaaaactat--cgaagtaataaaatttataagttcgtatccacaggga 28107584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6514344 - 6514283
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||||||| ||| |||||||    
T  6514344 tagcaagtgtactaaaactat--cgaagtaataaaatttataagttcgtatctacaaggactgt 6514283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13005541 - 13005488
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccaca 56  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||    
T  13005541 tagcaagtgtactaaaactat--cgaagtaataaaatttataagttcgtatccaca 13005488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14281292 - 14281353
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||| |||||||||| ||||||    
T  14281292 tagcaagtgtactaaaactata--gaagtaataaaatttataagtttgtatccacagagactgt 14281353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5260158 - 5260099
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggact 62  Q
    |||||| |||||||||| |||  ||||||||||||||||||||||||||||||||| |||||    
T  5260158 tagcaaatgtactaaaactat--cgaagtaataaaatttataagttcgtatccacaaggact 5260099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17733259 - 17733328
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataa--gttcgtatccacagggactgtttcaa 69  Q
    |||||||||||||||   |||||||||||||||||||||||||   |||||||||| ||||||||||||||    
T  17733259 tagcaagtgtactaact-tatatcgaagtaataaaatttataaagattcgtatccatagggactgtttcaa 17733328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17106395 - 17106445
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccac 55  Q
    ||||||||||||||||||| |||||||||||||||    ||||||||||||||||    
T  17106395 tagcaagtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccac 17106445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10290332 - 10290296
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  10290332 tagcaagtgtactaaaaatgtatcgaagtaataaaat 10290296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2372685 - 2372642
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagtt 46  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||    
T  2372685 tagcaagtgtactaaaactat--cgaagtaataaaatttataagtt 2372642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 20186090 - 20186031
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||| ||||||||| |||||||||||||||    ||||||||||||||||  |||||||    
T  20186090 tagcaagtgcactaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgt 20186031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 22149901 - 22149960
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||| ||||||||| |||||||||||||||    ||||||||||||||||  |||||||    
T  22149901 tagcaagtgcactaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgt 22149960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 35026933 - 35027026
Alignment:
Q  42 aagttcgtatccacagggactgtt-tcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattca-ggggtgccctaggcagttg 133  Q
    ||||||||||||||| |||  ||| | |||||||||||  |||   ||||||||| |||||||||||||||| | ||| |||||||||||||||    
T  35026933 aagttcgtatccacaaggaacgttgttaatttctacttaacaagttcgttaaaataaaggatgtattaaatttatgggttgccctaggcagttg 35027026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 41778749 - 41778985
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| ||||||| ||||||||| || |    
T  41778749 tagcaactgtactaaaaatatatcgaagtaataaaatttataagttcgtatt-acaaggactgtttcaatttctactcggcaaaaacgttaaaataaaag 41778847  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaag 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||| |||| |||||||    
T  41778848 atgtattaaattcaagggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagatt-gatttagaagattaaagagaag 41778946  T
Q  201 tatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||||||||||| ||| |||| |||||||||||||||||    
T  41778947 tatggttaagaccttcaaatcttccgaagttctcctatg 41778985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13097264 - 13097022
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| ||||||| ||||||||| ||||    
T  13097264 tagcaagtgtactaaaaatatatcgaagtaataaaatttata-gttcgtattcacagggactatttcaatttctactcggcaaaaacgttaaaataaagg 13097166  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacg----aat-taaaaactataaaaaattggttttagaaaattagag 195  Q
    ||||||||||||||  |||| |||| | |||||||||| ||| ||||||||||| |    |||  |||||| |||||| ||| |||||||||||||||||    
T  13097165 atgtattaaattcaatggtggcctatggagttgaattggtttgtgtaacataaaagtgataataaaaaaacaataaaagattagttttagaaaattagag 13097066  T
Q  196 agaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  13097065 agaagtatggttaagaccttcgaatcctccgaagttatcctatg 13097022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 44008525 - 44008307
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatg 103  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||| ||  |||    
T  44008525 caagtgtactaaaaatatatcaaagtaataaaatttataagttcgtatttacatggactgtttcaatttctacttggcaaaaacgttaaaataaattatg 44008426  T
Q  104 tattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaagtat 203  Q
    |||||||||||  |||||||||| ||||||| ||||||| ||||||| ||| | ||||||| |       ||||||||||||||||||||| |||| |||    
T  44008425 tattaaattcaatggtgccctagacagttgatttgatttatgtaacaaaaaaggattaaaagc-------aattggttttagaaaattagaaagaattat 44008333  T
Q  204 ggttaagacattcgaatcctccgaag 229  Q
    ||||| ||| ||||||||||||||||    
T  44008332 ggttatgaccttcgaatcctccgaag 44008307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 12575401 - 12575535
Alignment:
Q  97 aaggatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagaga 196  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||   ||||||||| |||||| ||||||||||||||||||||||    
T  12575401 aaggatgtattaaattcaatggtgccctaggcagttgagttgatttttgtaacataaattgattaaaaacaataaaagattggttttagaaaattagaga 12575500  T
Q  197 gaagtatggttaagacattcgaatcctccgaagtt 231  Q
    ||||||||||||||||  | |||||||||||||||    
T  12575501 gaagtatggttaagaccattgaatcctccgaagtt 12575535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 12820651 - 12820783
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataa-gttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaag 99  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||   |||||||| |||    
T  12820651 tagcaagtgtgctaaaaatatatcgaagtaataaaatttataaagttcgtatccacatggactgtttcaatttctactcggcaaagatgttaaaataaag 12820750  T
Q  100 gatgtattaaattca-ggggtgccctaggcagt 131  Q
    ||||| |||| || | ||| |||||||||||||    
T  12820751 gatgtgttaagtttatgggttgccctaggcagt 12820783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 14418585 - 14418465
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttta-gaaaattagagagaagtatggttaagacattcg 217  Q
    |||||||||||||||| ||| |||||  ||||||||| |||||||||| ||||||  ||||||||| ||| |||||||||||||||||||||||||||||    
T  14418585 tgccctaggcagttgagttggttttt--aacataaacaaattaaaaacaataaaag-ttggttttaagaatattagagagaagtatggttaagacattcg 14418489  T
Q  218 aatcctccgaagttctcctatgat 241  Q
    ||||||||||| ||||||||||||    
T  14418488 aatcctccgaatttctcctatgat 14418465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 587666 - 587537
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatg 103  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||  ||||||||  |||||||    
T  587666 caagtgtattaaaaatataacgaagtaataaaatttataagttcgtatccgcatggactgtttcaatttctactcgacaaagacgttaaaactaaggatg 587567  T
Q  104 tattaaattcaggggtgccctaggcagttg 133  Q
    | ||||| | | || | |||||||||||||    
T  587566 tgttaaaattatggttaccctaggcagttg 587537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 626256 - 626385
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatg 103  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| | || |  ||||||||  |||||||    
T  626256 caagtgtattaaaaatataacgaagtaataaaatttataagttcgtatccgcatggactgtttcaatttctactcgtcatagacgttaaaactaaggatg 626355  T
Q  104 tattaaattcaggggtgccctaggcagttg 133  Q
    | ||||| | | || | |||||||||||||    
T  626356 tgttaaaattatggttaccctaggcagttg 626385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 5828345 - 5828253
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattca-ggggtgccctaggcagttg 133  Q
    ||||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||| |||||||| | ||| |||||||||||||||    
T  5828345 aagttcgtatccacatggactgtttcaatttctactcgtcaaaagcgttaaaataaaggatgcattaaatttatgggttgccctaggcagttg 5828253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 41836294 - 41836394
Alignment:
Q  97 aaggatgtattaaattca--ggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattaga 194  Q
    |||||||||| |||||||  || ||||||||||||||||| |||| |||||||| ||||||||| ||||||| || |||| |||||||||||||||| ||    
T  41836294 aaggatgtataaaattcaatggtgtgccctaggcagttgagttgacttttgtaatataaacgaaataaaaacaat-aaaagttggttttagaaaatttga 41836392  T
Q  195 ga 196  Q
    ||    
T  41836393 ga 41836394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2847591 - 2847667
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||    
T  2847591 tagcaagtgtactaact-tatatcgaagtaataacatttataagattcgtatccacagggactgtttcaacttctact 2847667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5952470 - 5952394
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  5952470 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatccacaaggactgtttcaacttctact 5952394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 27805370 - 27805503
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaag 99  Q
    |||||||||||||||||||  ||| || |||||||||||||||| ||||| | |||||||| |||||||||||||||| | ||| |  ||||  || |||    
T  27805370 tagcaagtgtactaaaaatgcatcaaaataataaaatttataagattcgtcttcacagggattgtttcaatttctactcgacaataatgttatcattaag 27805469  T
Q  100 gatgtattaaattcaggggtgccctaggcagttg 133  Q
    ||||||||||| |  ||| || ||||||||||||    
T  27805470 gatgtattaaaatgggggttgtcctaggcagttg 27805503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 45155043 - 45155101
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggac 61  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  45155043 tagcaagtgtactaaaactat--cgaagtaataaaatttataagttcgtatccacagggac 45155101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 12104224 - 12104298
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttcta 75  Q
    |||||||||| |||||  |||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||    
T  12104224 tagcaagtgtgctaaac-tatatcgaagtaataaaatttataagatttgtatccatagggactgtttcaacttcta 12104298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 14418435 - 14418396
Alignment:
Q  189 attagagagaagtatggttaagacattcgaatcctccgaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14418435 attagagagaagtatggttaagacattcgaatcctccgaa 14418396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37681294 - 37681350
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacaggg 59  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||| ||||||||||||    
T  37681294 tagcaagtgtactaataatat--cgaagtaataaaatttataagtttgtatccacaggg 37681350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 41836415 - 41836466
Alignment:
Q  188 aattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  41836415 aatttgagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 41836466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33383704 - 33383628
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   ||||| |||||||||| ||||||||| |||||||||||| |||||||||||| |||||||    
T  33383704 tagcaagtgtactaact-tatatggaagtaataatatttataagattcgtatccacaaggactgtttcaacttctact 33383628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25231427 - 25231374
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccaca 56  Q
    ||||||||||||||||| |||  |||||||||||| ||||||||||||||||||||    
T  25231427 tagcaagtgtactaaaactat--cgaagtaataaattttataagttcgtatccaca 25231374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36710411 - 36710472
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||| | |||  | |||||||||| ||||||||||||||||||||||||||||    
T  36710411 tagcaagtgtactaagactat--caaagtaataaagtttataagttcgtatccacagggactgt 36710472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 33883125 - 33883185
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||||||||  ||||||||||||||||   |||||||||||||||  |||||||    
T  33883125 tagcaagtgtactaaaaatgcatcgaagtaataaaat---taagttcgtatccacgaggactgt 33883185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5538546 - 5538582
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  5538546 tagcaagtgtactaaaaatgtatcgaagtaataaaat 5538582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 14349342 - 14349290
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccaca 56  Q
    |||||||||||||||| ||||||||||||||  |||||||||| || ||||||    
T  14349342 caagtgtactaaaaatgtatcgaagtaataatttttataagtttgtctccaca 14349290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29612959 - 29613041
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaa 83  Q
    ||||||||||| |||||||  ||| |||| ||||||||||||| || || || ||| ||| ||||||||| || |||||||||    
T  29612959 tagcaagtgtattaaaaatgcatcaaagtgataaaatttataaatttgtttcaacatggattgtttcaatctcaacttggcaa 29613041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12583364 - 12583328
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  12583364 tagcaagtgtactaaaaatgtatcgaaataataaaat 12583328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 14627637 - 14627589
Alignment:
Q  48 gtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatg 96  Q
    |||||||| |||| |||||||||||||||| | |||||| |||||||||    
T  14627637 gtatccactgggagtgtttcaatttctactcgacaaaagtgttaaaatg 14627589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43681661 - 43681697
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||||||||||||  ||||||||||||||||    
T  43681661 tagcaagtgtactaaaaatgcatcgaagtaataaaat 43681697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 50097019 - 50096825
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  |||||||| ||||    
T  50097019 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcgg-aaaaaagttaaaataaagg 50096921  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagaga 196  Q
    |||||||||||||| | |||||||| |||||||| ||||||||||||||||||||| | |||||||  |||||  | | |||||||||||||||||    
T  50096920 atgtattaaattcaagagtgccctaagcagttgagttgatttttgtaacataaacgtaataaaaacagtaaaagttggtttttagaaaattagaga 50096825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9155164 - 9155053
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  9155164 tagcaagtgtactaaaaataaatcgaaataataaaatttataagttcgtatccacagggactgtttcaatttctactcggcaaaaacgttaaaatcaagg 9155065  T
Q  101 atgtattaaatt 112  Q
    ||||||||||||    
T  9155064 atgtattaaatt 9155053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9158346 - 9158235
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  ||||  |||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  9158346 tagcaagtgtactaaaaataaatcgaagtaataaaatttataagtatgtatttacagggactgtttcaatttctactcggcaaaaacgttaaaatcaagg 9158247  T
Q  101 atgtattaaatt 112  Q
    ||||||||||||    
T  9158246 atgtattaaatt 9158235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 22626434 - 22626554
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaagtatggttaagacattc 216  Q
    |||||||||||||||||| |||||||  |||||||||||  ||||||||| ||||| |||||| ||||||||||| |||||||||||||||||| | |||    
T  22626434 ggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggatttagaaaatt-gagagaagtatggttaagtccttc 22626531  T
Q  217 gaatcctccgaagttctcctatg 239  Q
    ||||||||| ||| |||||||||    
T  22626532 gaatcctccaaagctctcctatg 22626554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 39563633 - 39563756
Alignment:
Q  118 gtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacta-taaaaaattggttttagaaaattagagagaagtatggttaagacattc 216  Q
    ||||||||||||||||| |||||||| ||||||||||| || | |||| || ||||| ||||||||||||||||  |||||||| ||||||||| | |||    
T  39563633 gtgccctaggcagttgagttgatttt-gtaacataaacaaaattaaaaatagtaaaagattggttttagaaaatctgagagaagaatggttaagtccttc 39563731  T
Q  217 gaatcctccgaagttctcctatgat 241  Q
    ||||||||||| | |||||||||||    
T  39563732 gaatcctccgacgctctcctatgat 39563756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 11138692 - 11138812
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaagtatggttaagacattc 216  Q
    |||||||||||||||||| |||||||  |||||||||||  ||||||||| ||| | |||||| || |||||||| |||||||||||||||||| | |||    
T  11138692 ggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaatatagaattggattcagaaaatt-gagagaagtatggttaagtccttc 11138789  T
Q  217 gaatcctccgaagttctcctatg 239  Q
    ||||||||| ||| |||||||||    
T  11138790 gaatcctccaaagctctcctatg 11138812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 46731560 - 46731496
Alignment:
Q  175 attggttttagaaaattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||    
T  46731560 attggttttagaaaattagagagatgtaaggttaagaccttcgaatcctccgaagttctcatatg 46731496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10557813 - 10557889
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  10557813 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctact 10557889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 19194067 - 19194008
Alignment:
Q  19 tatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  19194067 tatatcgaagtaataaaatttataagattcgtatccacaaggactgtttcaatatctact 19194008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 13979557 - 13979488
Alignment:
Q  171 aaaaattggtttta-gaaaattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||| ||||||||| ||| |||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  13979557 aaaagttggttttaagaatattagagagaagtatggttaagacctttgaatcctccgaagctctcctatg 13979488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 18552025 - 18551893
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||| ||||||   || |||||||||||||| | ||||||||||| ||  ||||||||| |||||||||  ||||||  | ||||||| ||||    
T  18552025 tagcaagtgtaataaaaaagaattgaagtaataaaattcacaagttcgtatcaactaggactgttttaatttctacaaggcaaagacattaaaattaagg 18551926  T
Q  101 atgtattaaattca-ggggtgccctaggcagtt 132  Q
    |||| ||||||| | ||| ||| ||||||||||    
T  18551925 atgtgttaaatttatgggttgctctaggcagtt 18551893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 36036772 - 36036850
Alignment:
Q  56 agggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattc-aggggtgccctaggcagttg 133  Q
    |||||||||||||||||||| |   ||||||||||||||| ||  ||||||||||||| | || |||||||||||||||    
T  36036772 agggactgtttcaatttctattcaacaaaagcgttaaaataaattatgtattaaattcaatggttgccctaggcagttg 36036850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 32287081 - 32287139
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||| |||  ||||||||||||||||||||||| ||||||| ||| |||||    
T  32287081 caagtgtactaaaactat--cgaagtaataaaatttataagtttgtatccataggaactgt 32287139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 52309385 - 52309435
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccac 55  Q
    ||||||||||||||||||| |||||||||||||||    ||||||||||||||||    
T  52309385 tagcaagtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccac 52309435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16244314 - 16244278
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  16244314 tagcaagtgtactaaaaatacatcgaagtaataaaat 16244278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 20536437 - 20536496
Alignment:
Q  97 aaggatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacg 156  Q
    ||||||||| |||||||| ||||||||||||||||||  |||| || ||||||| |||||    
T  20536437 aaggatgtagtaaattcaagggtgccctaggcagttgggttgacttgtgtaacacaaacg 20536496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 52200347 - 52200279
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttc 73  Q
    ||||||||||| ||||||| |||||||||||||||    ||||||||||||||||  ||||||| | ||||||    
T  52200347 tagcaagtgtattaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgtgttaatttc 52200279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10881921 - 10881862
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||| ||||||||||||| |||||||||||||||    ||||||||||||||||  |||||||    
T  10881921 tagcatgtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgt 10881862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10902381 - 10902322
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||||||| |||| ||||||||||    ||||||||||||||||  |||||||    
T  10902381 tagcaagtgtactaaaaatgtatctaagtaataaa----ataagttcgtatccacgaggactgt 10902322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25261027 - 25260985
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataa 43  Q
    |||||||||||||||||||  ||| ||||||||||||||||||    
T  25261027 tagcaagtgtactaaaaatgcatcaaagtaataaaatttataa 25260985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 47051926 - 47051877
Alignment:
Q  3 gcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccac 55  Q
    |||||||||||||||||  ||||||||||||||||   |||||||||||||||    
T  47051926 gcaagtgtactaaaaatgcatcgaagtaataaaat---taagttcgtatccac 47051877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 55034684 - 55034735
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccaca 56  Q
    |||||||||||||||||||  ||||||||||||||    |||||||||||||||||    
T  55034684 tagcaagtgtactaaaaatgcatcgaagtaataaa----ataagttcgtatccaca 55034735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10960242 - 10960181
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||| ||||||||| |||  ||||||||||||| | ||||||||||||||||  |||||||    
T  10960242 tagcaagcgtactaaaactat--cgaagtaataaaaataataagttcgtatccacgaggactgt 10960181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10963749 - 10963688
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||| ||||||||| |||  ||||||||||||| | ||||||||||||||||  |||||||    
T  10963749 tagcaagcgtactaaaactat--cgaagtaataaaaataataagttcgtatccacgaggactgt 10963688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41977442 - 41977406
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  41977442 tagcaagtgtattaaaaatgtatcgaagtaataaaat 41977406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 7593 - 7453
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||||    
T  7593 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacaaggactgtttcaatttctactcggaaaaagcgttaaaataaagg 7494  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatt 141  Q
    || |||||||||||  |||||||||||||||||| ||||||    
T  7493 atatattaaattcaatggtgccctaggcagttgagttgatt 7453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 17944977 - 17944837
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||    
T  17944977 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagagactgtttcaatttctactcggcaaaagcattaaaataaagg 17944878  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatt 141  Q
    || |||||||||||  |||||||||||||||||| ||||||    
T  17944877 atatattaaattcaatggtgccctaggcagttgagttgatt 17944837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 11988974 - 11989108
Alignment:
Q  104 tattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaagtat 203  Q
    |||||||||||  ||| |||||||||||||| ||||||||||||||||||||  ||||||||| |||||| |||| |||||||||||||||||||||||     
T  11988974 tattaaattcaatggtcccctaggcagttgagttgatttttgtaacataaacagattaaaaacgataaaagattgattttagaaaattagagagaagtaa 11989073  T
Q  204 ggttaagacattcgaatcctccgaagttctcctat 238  Q
    ||||||||| |||||||||||| ||||||||||||    
T  11989074 ggttaagaccttcgaatcctccaaagttctcctat 11989108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 33575212 - 33575091
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacatt 215  Q
    |||||||||||||||||| |||||||  |||||||||||  ||||||||| ||||| |||||||||| |||||||| |||||||||||||||||| | ||    
T  33575212 ggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggtttttagaaaatt-gagagaagtatggttaagtcctt 33575115  T
Q  216 cgaatcctccgaagttctcctatg 239  Q
    |||||||||||||| |||||||||    
T  33575114 cgaatcctccgaagctctcctatg 33575091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 35432242 - 35432373
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaa-----atttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaa 98  Q
    |||||||| |||||||  ||||||||||||||     ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| ||    
T  35432242 caagtgtattaaaaatgcatcgaagtaataaattaaaatttataagttcgtatccacagggactgtttcaatttttactcgacaaaagcgttaaaataaa 35432341  T
Q  99 ggatgtattaaattca-ggggtgccctaggca 129  Q
     ||||||||||||| | ||| |||||||||||    
T  35432342 tgatgtattaaatttatgggttgccctaggca 35432373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 9691080 - 9690989
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattca-ggggtgccctaggcagtt 132  Q
    |||||||||||||||| || |||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||| ||||||||||||||    
T  9691080 aagttcgtatccacagagattgtttcaatttctactcggcaaaagcgttaaaataaaggatgtattaaatttatgggttgccctaggcagtt 9690989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 33320725 - 33320795
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaatt 112  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  33320725 aagttcgtatccacagggactgcttcaatttctactcggcaaaagcgttaaaataaaggatgtattaaatt 33320795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 26712465 - 26712588
Alignment:
Q  118 gtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacta-taaaaaattggttttagaaaattagagagaagtatggttaagacattc 216  Q
    ||||||||| ||||||| |||||||| ||||||||||| || | |||| || ||||| ||||||||||||||||  |||||||| ||||||||| | |||    
T  26712465 gtgccctagacagttgagttgatttt-gtaacataaacaaaattaaaaatagtaaaagattggttttagaaaatctgagagaagaatggttaagtctttc 26712563  T
Q  217 gaatcctccgaagttctcctatgat 241  Q
    ||||||||||| | |||||||||||    
T  26712564 gaatcctccgacgctctcctatgat 26712588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 26982203 - 26982326
Alignment:
Q  118 gtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacta-taaaaaattggttttagaaaattagagagaagtatggttaagacattc 216  Q
    ||||||||| ||||||| |||||||| ||||||||||| || | |||| || ||||| ||||||||||||||||  |||||||| ||||||||| | |||    
T  26982203 gtgccctagacagttgagttgatttt-gtaacataaacaaaattaaaaatagtaaaagattggttttagaaaatctgagagaagaatggttaagtctttc 26982301  T
Q  217 gaatcctccgaagttctcctatgat 241  Q
    ||||||||||| | |||||||||||    
T  26982302 gaatcctccgacgctctcctatgat 26982326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 15532322 - 15532429
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt--agaaaattagagagaagtatggttaagacat 214  Q
    |||||||||||||||||| |||||||  |||||||||||  ||||||||| ||||| ||||||||||  |||||||| |||||||||||||||||| | |    
T  15532322 ggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcct 15532419  T
Q  215 tcgaatcctc 224  Q
    ||||||||||    
T  15532420 tcgaatcctc 15532429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 15542504 - 15542611
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt--agaaaattagagagaagtatggttaagacat 214  Q
    |||||||||||||||||| |||||||  |||||||||||  ||||||||| ||||| ||||||||||  |||||||| |||||||||||||||||| | |    
T  15542504 ggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcct 15542601  T
Q  215 tcgaatcctc 224  Q
    ||||||||||    
T  15542602 tcgaatcctc 15542611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 22159866 - 22159746
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttta-gaaaattagagagaagtatggttaagacattcg 217  Q
    ||||||||||||||| |||| ||||| |||  |||||| |   ||||| ||||||| ||||||||| ||| ||||||||||| |||||||||||| || |    
T  22159866 tgccctaggcagttggattggtttttataaagtaaacgtaaataaaacaataaaaa-ttggttttaagaatattagagagaaatatggttaagacctttg 22159768  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||||||||||||||||||    
T  22159767 aatcctccgaagttctcctatg 22159746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 7650067 - 7650185
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    |||||||||||||||| |||  |||||||||||||||| |   ||||| || |||| ||| |||| |||| ||||||||||||||||||||||||||| |    
T  7650067 tgccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaat-aaaagttgcttttaagaatattagagagaagtatggttaagacatttg 7650163  T
Q  218 aatcctccgaagttctcctatg 239  Q
    |||||| ||||||||| |||||    
T  7650164 aatcctacgaagttcttctatg 7650185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 34405968 - 34405850
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    |||||||||||||||| |||  || ||||||||||||| |   ||||| ||||||  |||||||| |||| |||||||||||||||||||||||| |||     
T  34405968 tgccctaggcagttgagttg--ttgtgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttca 34405872  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||| ||||||||||||||    
T  34405871 aatcctctgaagttctcctatg 34405850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 18239279 - 18239340
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggact 62  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  18239279 tagcaagtgtattaaaaatgaatcgaagtaataaaatttataagttcgtatccacatggact 18239340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22036202 - 22036126
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  22036202 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctact 22036126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 14616556 - 14616672
Alignment:
Q  121 ccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcgaa 219  Q
    ||||||| |||||| |||  |||||||||||||||| |   ||||| || |||| ||| |||| |||| |||||||||||||||||||||||| || |||    
T  14616556 ccctaggaagttgagttg--ttttgtaacataaacgtaaataaaacaat-aaaagttgattttaagaatattagagagaagtatggttaagacctttgaa 14616652  T
Q  220 tcctccgaagttctcctatg 239  Q
    ||||||||||||||||||||    
T  14616653 tcctccgaagttctcctatg 14616672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22039428 - 22039352
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||||    
T  22039428 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccatagggactgtttcaacttctact 22039352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 36357093 - 36357012
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctacttggcaaa 84  Q
    ||||||||||||||||  ||||||||||||| ||||||||| ||||| |||||| |||| ||||||||||||| | ||||||    
T  36357093 caagtgtactaaaaatgcatcgaagtaataatatttataagattcgtctccacatggaccgtttcaatttctattcggcaaa 36357012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 36700783 - 36700728
Alignment:
Q  23 tcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  36700783 tcgaagtaataaaatttataagattcatatccacagggactgtttcaacttctact 36700728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 43103683 - 43103742
Alignment:
Q  19 tatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||    
T  43103683 tatatcgaagtaataaaatttataagattcgtatctatagggactgtttcaacttctact 43103742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21332451 - 21332519
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttc 73  Q
    ||||||||||||||||||| |||||||||||||||    ||||||||||||||||  ||||||| | ||||||    
T  21332451 tagcaagtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgtgttaatttc 21332519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7271374 - 7271315
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||||||| |||||||||||||||    ||||||||||||||||  |||||||    
T  7271374 tagcaagtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgt 7271315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 13423294 - 13423366
Alignment:
Q  5 aagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    ||||||||||||  ||||| |||||||||||||||||||| |||||||| |||  ||||||||||| |||||||    
T  13423294 aagtgtactaaac-tatattgaagtaataaaatttataagattcgtatctacaaagactgtttcaacttctact 13423366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28787096 - 28787146
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccac 55  Q
    ||||||||||||||||||| |||||||||||||||    ||||||||||||||||    
T  28787096 tagcaagtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccac 28787146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32838223 - 32838188
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaa 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  32838223 tagcaagtgtactaaaaatgtatcgaagtaataaaa 32838188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4099302 - 4099361
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||||||||  ||||||||||||||    ||||||||||||||||  |||||||    
T  4099302 tagcaagtgtactaaaaatgcatcgaagtaataaa----ataagttcgtatccacgaggactgt 4099361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 21335473 - 21335506
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||||||||| |||||||||||||||||    
T  21335473 caagtgtactaaaaatgtatcgaagtaataaaat 21335506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 32228221 - 32228164
Alignment:
Q  23 tcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctacttg 79  Q
    |||||||||| ||||||||||  |||||||||||| | ||||||||||||| ||||||    
T  32228221 tcgaagtaatcaaatttataaacttcgtatccacatgaactgtttcaatttttacttg 32228164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 26338261 - 26338209
Alignment:
Q  82 aaaagcgttaaaatgaaggatgtattaaattca-ggggtgccctaggcagttg 133  Q
    |||||||||| ||| |||||||||||||||| | ||| |||||||||||||||    
T  26338261 aaaagcgttagaataaaggatgtattaaatttatgggttgccctaggcagttg 26338209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 33552471 - 33552418
Alignment:
Q  7 gtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||| |||||||||||||||    ||||||||||||||||  |||||||    
T  33552471 gtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgt 33552418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 24605010 - 24605149
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  24605010 tagcaagtgtactaaaaatatatcgaagtaataaaatctataagttcgtatccacaaggactgtttcaatttctacttggcaaaaacgttaaaataaagg 24605109  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatt 141  Q
    ||||||||||||||  |||| ||||||||||||| ||||||    
T  24605110 atgtattaaattcaatggtg-cctaggcagttgagttgatt 24605149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 7394633 - 7394765
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||  | ||||||| ||||    
T  7394633 tagcaagtgtactaaaagtatatcgaagtaataaaatttataagttcgtatccacatggactgtttcaatttctactcagcaaagacattaaaattaagg 7394732  T
Q  101 atgtattaaattcaggggtgccctaggcagttg 133  Q
    |||| ||||| | | || |||||||||||||||    
T  7394733 atgtgttaaaattatggttgccctaggcagttg 7394765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 26062793 - 26062937
Alignment:
Q  97 aaggatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaatt--aga 194  Q
    |||||||||||||||||| || ||||||||| ||||| |||| | ||||||| ||||||| ||||||||| ||||||  ||||||||||||||||  |||    
T  26062793 aaggatgtattaaattcaaggttgccctaggtagttggattggtatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaattagaga 26062892  T
Q  195 gagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||| ||||||||||||| || |||||||||||||||||||||||    
T  26062893 gagatgtatggttaagacctttgaatcctccgaagttctcctatg 26062937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 2542027 - 2541886
Alignment:
Q  97 aaggatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattgg-ttttagaaaattagag 195  Q
    ||||||||||||||||||  |||||||||||||||||| || ||| |||||||||||||| ||||||||| |||||| || || |||| |||||||| ||    
T  2542027 aaggatgtattaaattcaatggtgccctaggcagttgagtttattcttgtaacataaacggattaaaaacaataaaatataggttttttgaaaattaaag 2541928  T
Q  196 agaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    ||  ||||||||||||| ||||||||||| ||||||||| ||||    
T  2541927 ag--gtatggttaagaccttcgaatcctctgaagttctcttatg 2541886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 26060849 - 26060653
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    ||||||||||||||||||| ||||||||||||||||   ||||||||||||||||  ||||| | | ||| || | || |||| |  ||||| ||  ||     
T  26060849 tagcaagtgtactaaaaatgtatcgaagtaataaaa---ataagttcgtatccacgaggactatgttaatctcaagttagcaataaggttaatatttaga 26060753  T
Q  101 atgtattaaattca--ggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagaga 198  Q
    |||||| |||||||  || ||||||||||||| ||| ||||||||||||| ||||| ||| ||||||| || |||| |||||||||||||||| ||||||    
T  26060752 atgtataaaattcaatggtgtgccctaggcaggtgagttgatttttgtaatataaatgaaataaaaacaat-aaaagttggttttagaaaatttgagaga 26060654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26703247 - 26703356
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||| ||||||||||  ||| |||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||   ||||||||| ||||    
T  26703247 tagcaagtatactaaaaatgcatcaaagtaataaaatttataacttcgtatctacaggaaccgtttcaatttctacttggcaaggacgttaaaattaagg 26703346  T
Q  101 atgtattaaa 110  Q
    |||| |||||    
T  26703347 atgtgttaaa 26703356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 37176955 - 37176863
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattca-ggggtgccctaggcagttg 133  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| | ||| |||||||| ||||||    
T  37176955 aagttcgtatccacaaggactgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgccctagacagttg 37176863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 2437021 - 2436966
Alignment:
Q  8 tgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactg 63  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  2437021 tgtactaaaaatatatcgaagtaataaaatttataagttcatatccacaaggactg 2436966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 647329 - 647447
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    ||||||||||| |||| |||  |||||||||||||||| |   ||||| ||||||  |||||||| |||| |||||||||||||||||||||||  ||||    
T  647329 tgccctaggcatttgagttg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagatcttcg 647425  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||| ||||||||||||||    
T  647426 aatcctctgaagttctcctatg 647447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 650601 - 650719
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    ||||||||||| |||| |||  |||||||||||||||| |   ||||| ||||||  |||||||| | || |||||||||||||||||||||||| ||||    
T  650601 tgccctaggcatttgagttg--ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcataatattagagagaagtatggttaagaccttcg 650697  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||| ||||||||||||||    
T  650698 aatcctctgaagttctcctatg 650719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 11649305 - 11649405
Alignment:
Q  97 aaggatgtattaaattca--ggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattaga 194  Q
    |||||||||| |||||||  || ||||||||||||||||| |||| |||||||| ||||||||| ||||||| || |||| |||||||||||||||| ||    
T  11649305 aaggatgtataaaattcaatggtgtgccctaggcagttgagttgacttttgtaatataaacgaaataaaaacaat-aaaagttggttttagaaaatttga 11649403  T
Q  195 ga 196  Q
    ||    
T  11649404 ga 11649405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 54900121 - 54900045
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  54900121 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatccacatggactgtttcaacttctact 54900045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 53094859 - 53094796
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||| || ||||  |||||||||||||| ||||||||||||||||||||||||||||    
T  53094859 tagcaagtgtattataaatgaatcgaagtaataaactttataagttcgtatccacagggactgt 53094796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 19859280 - 19859337
Alignment:
Q  4 caagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactg 63  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||||| ||||||||    
T  19859280 caagtgtactaaaactata--gaagtaataaaatttataagttcgtatccaaagggactg 19859337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 11649426 - 11649477
Alignment:
Q  188 aattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  11649426 aatttgagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 11649477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 26060635 - 26060589
Alignment:
Q  193 gagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  26060635 gagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 26060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 22884191 - 22884248
Alignment:
Q  22 atcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctactt 78  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||    
T  22884191 atcgaagtaataaaatttataagattcgtatccacagtgactgtttcaacttttactt 22884248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 22935855 - 22935912
Alignment:
Q  22 atcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctactt 78  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||    
T  22935855 atcgaagtaataaaatttataagattcgtatccacagtgactgtttcaacttttactt 22935912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 19864172 - 19864228
Alignment:
Q  3 gcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggac 61  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||||| || ||||||    
T  19864172 gcaagtgtactaaaactat--cgaagtaataaaatttataagttcgtattcagagggac 19864228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 12786468 - 12786409
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||||||| |||||||||||||||    ||||||||||||||||  |||||||    
T  12786468 tagcaagtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgt 12786409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3797590 - 3797650
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||||||||  ||||||||||||||||   |||||||||||||||  |||||||    
T  3797590 tagcaagtgtactaaaaatgcatcgaagtaataaaat---taagttcgtatccacgaggactgt 3797650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15811911 - 15811971
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||||||||  ||||||||||||||||   |||||||||||||||  |||||||    
T  15811911 tagcaagtgtactaaaaatgcatcgaagtaataaaat---taagttcgtatccacgaggactgt 15811971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19821060 - 19821010
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccac 55  Q
    ||||||||||||||||||| |||||||||||||||    ||||||||||||||||    
T  19821060 tagcaagtgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccac 19821010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40795358 - 40795321
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatt 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  40795358 tagcaagtgtactaaaaatgtatcgaagtaataaaatt 40795321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 56199200 - 56199140
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||||||||  ||||||||||||||||   |||||||||||||||  |||||||    
T  56199200 tagcaagtgtactaaaaatgcatcgaagtaataaaat---taagttcgtatccacgaggactgt 56199140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44165135 - 44165099
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  44165135 tagcaagtgtactaaaaatgtatcgaagtaataaaat 44165099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 48415291 - 48415326
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaa 36  Q
    |||||||||||||||||| |||||||||||||||||    
T  48415291 tagcaagtgtactaaaaacatatcgaagtaataaaa 48415326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3720706 - 3720647
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||| |||||||||||| |||||||||||||||    ||||||||||||||||  |||||||    
T  3720706 tagcaaatgtactaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgt 3720647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 12172095 - 12172031
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttt 182  Q
    |||||||||||||||||| |||| ||| |||||||||||  ||||||||| ||||| | |||||||    
T  12172095 ggtgccctaggcagttgagttga-tttagtaacataaactgattaaaaacaataaagatttggttt 12172031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19827767 - 19827717
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccac 55  Q
    ||||||||||||||||||| | |||||||||||||    ||||||||||||||||    
T  19827767 tagcaagtgtactaaaaatgtctcgaagtaataaa----ataagttcgtatccac 19827717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 56195873 - 56195836
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatt 38  Q
    |||||||||||||||||||  |||||||||||||||||    
T  56195873 tagcaagtgtactaaaaatgcatcgaagtaataaaatt 56195836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5681772 - 5681736
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||||||||||||  ||||||||||||||||    
T  5681772 tagcaagtgtactaaaaatgcatcgaagtaataaaat 5681736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15404857 - 15404908
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccac 55  Q
    |||||||||||||||| ||  ||||||||||||||||   |||||||||||||||    
T  15404857 tagcaagtgtactaaatatgcatcgaagtaataaaat---taagttcgtatccac 15404908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35510337 - 35510301
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  35510337 tagcaagtgtactaaaaatgtatccaagtaataaaat 35510301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 49271025 - 49270993
Alignment:
Q  5 aagtgtactaaaaatatatcgaagtaataaaat 37  Q
    ||||||||||||||||||| |||||||||||||    
T  49271025 aagtgtactaaaaatatattgaagtaataaaat 49270993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 52006297 - 52006333
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||||||||||||  ||||||||||||||||    
T  52006297 tagcaagtgtactaaaaatgaatcgaagtaataaaat 52006333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 30720131 - 30719991
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  30720131 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagtttgtatccacaggggctgtttcaatttctactcggcaaaagcgttaaaataaagg 30720032  T
Q  101 atgtattaaattcaggggtgccctaggcagttgaattgatt 141  Q
    || |||||||||||  |||||| ||||||||||| ||||||    
T  30720031 atatattaaattcaatggtgccttaggcagttgagttgatt 30719991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 23673446 - 23673588
Alignment:
Q  97 aaggatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagaga 196  Q
    |||||||||||||||||| || ||||||||||||||| ||||   ||||||| ||||||| ||||||||| ||||||  |||||||||||||||||||||    
T  23673446 aaggatgtattaaattcaaggttgccctaggcagttggattggcatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaattagaga 23673545  T
Q  197 gaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    || ||||||||||||| ||||||||||||||||||||||||||    
T  23673546 gatgtatggttaagaccttcgaatcctccgaagttctcctatg 23673588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 36327067 - 36326928
Alignment:
Q  100 gatgtattaaattcaggggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaa 199  Q
    |||||||||||||||  | ||||||||| ||||  |||| | ||||||| ||||||| ||||||||| ||||||  |||||||||||||||||||||||     
T  36327067 gatgtattaaattcaaagttgccctaggaagttagattggtatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaattagagagat 36326968  T
Q  200 gtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    ||||||||||||| || |||||||||||||||||| ||||    
T  36326967 gtatggttaagacctttgaatcctccgaagttctcatatg 36326928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 31626673 - 31626551
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacg-aattaaaaactataaaaaattggttttagaaaattagagagaagtatggttaagacatt 215  Q
    |||||||||||||||||| |||||||| |||||||||| | |||||||||  |||||  ||||||||||||||||  |||||||| ||||||||| ||||    
T  31626673 ggtgccctaggcagttgagttgatttt-gtaacataaaaggaattaaaaataataaaggattggttttagaaaatctgagagaagaatggttaagtcatt 31626575  T
Q  216 cgaatcctccgaagttctcctatg 239  Q
    |||||||||||||| |||||||||    
T  31626574 cgaatcctccgaagctctcctatg 31626551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 40018099 - 40017981
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaagtatggttaagacattcga 218  Q
    |||||||||||||||| |||||||  |||||||||||| ||||||||| |||| | | |||||| |||||| | |||||||||||||||||||| |||||    
T  40018099 tgccctaggcagttgagttgattt--gtaacataaacggattaaaaacaataagagactggtttaagaaaaattgagagaagtatggttaagaccttcga 40018002  T
Q  219 atcctccgaagttctcctatg 239  Q
    ||||||||||  |||||||||    
T  40018001 atcctccgaaactctcctatg 40017981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 13710169 - 13710070
Alignment:
Q  143 ttgtaacataaacgaattaaaaactataaaaaattggttttagaaaattagagagaagtatggttaagacattcgaatcctccg-aagttctcctatgat 241  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| ||| |||| || | ||| |||||||||||    
T  13710169 ttgtaacataaacggattaaaaacaataaaagattggttttagaaaatttgagagaagtatggttaagaccttcaaatcatctgaaagctctcctatgat 13710070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 16295019 - 16294900
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcg 217  Q
    |||||||||||||||| |||||||| ||| |||||||  ||||||||| |  ||| ||| ||||| |||||||| |||||||||||||||||| | ||||    
T  16295019 tgccctaggcagttgagttgatttt-gtatcataaaccgattaaaaacaaataaagattagttttcagaaaatt-gagagaagtatggttaagtccttcg 16294922  T
Q  218 aatcctccgaagttctcctatg 239  Q
    ||||||||||||||||||||||    
T  16294921 aatcctccgaagttctcctatg 16294900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 31528513 - 31528406
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt--agaaaattagagagaagtatggttaagacat 214  Q
    |||||||||||||||||| |||||||  |||||||||||  ||||||||| ||||| ||||||||||  |||||||| |||||||||||||||||| | |    
T  31528513 ggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcct 31528416  T
Q  215 tcgaatcctc 224  Q
    ||||||||||    
T  31528415 tcgaatcctc 31528406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35077260 - 35077184
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  35077260 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctact 35077184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35080518 - 35080442
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  35080518 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctact 35080442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16881637 - 16881561
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||    
T  16881637 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatttacagggactgtttcaacttctact 16881561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17039327 - 17039251
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||    
T  17039327 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatttacagggactgtttcaacttctact 17039251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 32575859 - 32575932
Alignment:
Q  171 aaaaattggtttta-gaaaattagaga--gaagtatggttaagacattcgaatcctccgaagttctcctatgat 241  Q
    |||| ||||||||| ||| ||||||||  |||||||||||||||| |||||||||||||||| |||||||||||    
T  32575859 aaaagttggttttaagaatattagagaaagaagtatggttaagaccttcgaatcctccgaagctctcctatgat 32575932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43724038 - 43723979
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||||||||  |||||||    
T  43724038 tagcaagtgtactaaaaatatatcgaagtaataaa----ataagttcgtatccacgaggactgt 43723979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25138704 - 25138754
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccac 55  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  25138704 tagcaagtgtactaaaaatatatcgaagtaataaa----ataagttcgtatccac 25138754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6276933 - 6277002
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataa--gttcgtatccacagggactgtttcaa 69  Q
    |||||||||||||||   |||||||||||||||||||||||||   |||||||||| ||||||||||||||    
T  6276933 tagcaagtgtactaact-tatatcgaagtaataaaatttataaagattcgtatccatagggactgtttcaa 6277002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33749763 - 33749695
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaa 69  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||| |||||| | ||||||||||    
T  33749763 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtgtccacatgtactgtttcaa 33749695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5666855 - 5666819
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  5666855 tagcaagtgtattaaaaatatatcgaagtaataaaat 5666819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31427317 - 31427368
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccac 55  Q
    |||||||||||||||||||  ||||||||||||||||   |||||||||||||||    
T  31427317 tagcaagtgtactaaaaatgcatcgaagtaataaaat---taagttcgtatccac 31427368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15470796 - 15470728
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttc 73  Q
    ||||||| ||||||||||| |||||||||||||||    ||||||||||||||||  ||||||| | ||||||    
T  15470796 tagcaagggtactaaaaatgtatcgaagtaataaa----ataagttcgtatccacgaggactgtgttaatttc 15470728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25820620 - 25820688
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttc 73  Q
    |||||||||||||||||||  ||||||||||||||    ||||||||||||||||  ||||||| | ||||||    
T  25820620 tagcaagtgtactaaaaatgcatcgaagtaataaa----ataagttcgtatccacgaggactgtgttaatttc 25820688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 38132829 - 38132791
Alignment:
Q  19 tatatcgaagtaataaaatttataag-ttcgtatccaca 56  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  38132829 tatatcgaagtaataaaatttataagattcgtatccaca 38132791  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36808219 - 36808279
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||| | ||| |||||||||||||||||||   |||||||||||||||  |||||||    
T  36808219 tagcaagtgtatttaaactatatcgaagtaataaaat---taagttcgtatccacgaggactgt 36808279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 45457491 - 45457431
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||||| ||  ||||||||||||||||   |||||||||||||||  |||||||    
T  45457491 tagcaagtgtactaaatatgcatcgaagtaataaaat---taagttcgtatccacgaggactgt 45457431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13971678 - 13971714
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||||||||||||  ||||||||||||||||    
T  13971678 tagcaagtgtactaaaaatgcatcgaagtaataaaat 13971714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38460593 - 38460629
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  38460593 tagcaagtgtactaaaaatacatcgaagtagtaaaat 38460629  T

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Target: scaffold0363 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 133 - 253
Alignment:
Q  119 tgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttta-gaaaattagagagaagtatggttaagacattcg 217  Q
    |||||||||||||||| ||| |||||  ||||||||| |||||||||| ||||||  ||||||||| ||| |||||||||||||||||||||||||||||    
T  133 tgccctaggcagttgagttggttttt--aacataaacaaattaaaaacaataaaag-ttggttttaagaatattagagagaagtatggttaagacattcg 229  T
Q  218 aatcctccgaagttctcctatgat 241  Q
    ||||||||||| ||||||||||||    
T  230 aatcctccgaatttctcctatgat 253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 283 - 322
Alignment:
Q  189 attagagagaagtatggttaagacattcgaatcctccgaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  283 attagagagaagtatggttaagacattcgaatcctccgaa 322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 13910 - 13818
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattca-ggggtgccctaggcagttg 133  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||| |||||||||||||||    
T  13910 aagttcgtatccacagggactgtttcaatttctactcggcaaaagcgttaaaataaaggatgtattaaattgatgggttgccctaggcagttg 13818  T

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Target: scaffold0043; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 11567 - 11475
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattca-ggggtgccctaggcagttg 133  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| | ||| | |||||||||||||    
T  11567 aagttcgtatccacagggactgtttcaatttatactcggcaaaagcgttaaaataaaggatgtattaaatttatgggtttccctaggcagttg 11475  T

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Target: scaffold0045 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 90344 - 90432
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaattca-ggggtgccctaggca 129  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||| |||||||||||    
T  90344 aagttcgtatccacatggactgtttcaatttctactcggcaaaagcgttaaaataaaggatgtattaaatttatgggttgccctaggca 90432  T

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Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 90116 - 90080
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||||||||||||  ||||||||||||||||    
T  90116 tagcaagtgtactaaaaatgcatcgaagtaataaaat 90080  T

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Target: scaffold0440 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 9982 - 9865
Alignment:
Q  121 ccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacattcgaa 219  Q
    |||||||||||||| |||||||  |||||||||||  ||||||||| ||||| |||||||||| |||||||| |||||||||||||||||| | ||||||    
T  9982 ccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaataattggtttttagaaaatt-gagagaagtatggttaagtccttcgaa 9885  T
Q  220 tcctccgaagttctcctatg 239  Q
    |||||||||| |||||||||    
T  9884 tcctccgaagctctcctatg 9865  T

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Target: scaffold0567 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 5995 - 6054
Alignment:
Q  180 ttttagaaaattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  5995 ttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaggttctcctatg 6054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 4577 - 4507
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaatt 112  Q
    ||||| ||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||    
T  4577 aagtttgtatccacagggactgtatcaatttctactcggaaaaagcgttaaaataaaggatgtattaaatt 4507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 42919 - 42849
Alignment:
Q  42 aagttcgtatccacagggactgtttcaatttctacttggcaaaagcgttaaaatgaaggatgtattaaatt 112  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||    
T  42919 aagttcgtattcacagggactgtttcaacttctactcggcaaaaacgttaaaataaaggatgtattaaatt 42849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 24307 - 24426
Alignment:
Q  117 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaaattggtttt-agaaaattagagagaagtatggttaagacatt 215  Q
    |||||||||||||||||| |||||||  ||||  |||||  ||||||||| ||||| |||||||||| |||||||| |||||||| ||||||||| | ||    
T  24307 ggtgccctaggcagttgagttgattta-gtaa--taaactgattaaaaacaataaagaattggtttttagaaaatt-gagagaagcatggttaagtcctt 24402  T
Q  216 cgaatcctccgaagttctcctatg 239  Q
    |||||||||||||| |||||||||    
T  24403 cgaatcctccgaagctctcctatg 24426  T

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Target: scaffold0884 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4300 - 4376
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  4300 tagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtattcacagggactgtttcaacttctact 4376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1694 - 1755
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||||||||||| |||||||    
T  1694 tagcaagtgtactaaaactat--cgaagtaataaaatttataagttcgtatccacaaggactgt 1755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 237 - 306
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaat 70  Q
    ||||||||||| |||||||  |||||||||||||||||||||||||||| ||||||  || |||||||||    
T  237 tagcaagtgtattaaaaatgcatcgaagtaataaaatttataagttcgtctccacaaagattgtttcaat 306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2073 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 639 - 700
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    ||||||||||||||||| |||  |||||| |||||||||| |||||||||||||||||||||||    
T  639 tagcaagtgtactaaaactat--cgaagtgataaaatttacaagttcgtatccacagggactgt 700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2047 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold2047
Description:

Target: scaffold2047; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 563 - 622
Alignment:
Q  19 tatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||||||    
T  563 tatatcaaagtaataaaatttataagattcgtatccacagggattgtttcaacttctact 622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 36166 - 36107
Alignment:
Q  19 tatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||    
T  36166 tatatcgaagtaataaaatttataagatttgtatccacagggagtgtttcaacttctact 36107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 157424 - 157365
Alignment:
Q  19 tatatcgaagtaataaaatttataag-ttcgtatccacagggactgtttcaatttctact 77  Q
    |||||||||||||||||||||||||| |||| ||| || ||||||||||||| |||||||    
T  157424 tatatcgaagtaataaaatttataagattcgaatctacggggactgtttcaacttctact 157365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 2719 - 2797
Alignment:
Q  97 aaggatgtattaaattcaggggt-gccctaggcagttgaattgatttttgtaacataaacgaattaaaaactataaaaa 174  Q
    ||||||||||||||||||   || |||| ||| ||||| |||| |||||||||||| |||| |||||||||||||||||    
T  2719 aaggatgtattaaattcaattgttgcccaaggaagttggattggtttttgtaacatgaacggattaaaaactataaaaa 2797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 2794 - 2847
Alignment:
Q  186 aaaattagagagaagtatggttaagacattcgaatcctccgaagttctcctatg 239  Q
    |||||| ||||||||||| |||||||| || ||||||||||||| |||||||||    
T  2794 aaaatttgagagaagtatcgttaagacctttgaatcctccgaagctctcctatg 2847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14280 - 14235
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagtt 46  Q
    |||||||| |||||||||| |||||||||||||| |||||||||||    
T  14280 tagcaagtatactaaaaatgtatcgaagtaataagatttataagtt 14235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2843 - 2784
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||||||||  ||||||||||||||    ||||||||||||||||  |||||||    
T  2843 tagcaagtgtactaaaaatgcatcgaagtaataaa----ataagttcgtatccacgaggactgt 2784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27467 - 27408
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgt 64  Q
    |||||||||||||||||||  ||||||||||||||    ||||||||||||||||  |||||||    
T  27467 tagcaagtgtactaaaaatgcatcgaagtaataaa----ataagttcgtatccacgaggactgt 27408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 10153 - 10198
Alignment:
Q  11 actaaaaatatatcgaagtaataaaatttataagttcgtatccaca 56  Q
    |||||||||  |||||||||||||||||||||| ||||| ||||||    
T  10153 actaaaaatgcatcgaagtaataaaatttataaattcgtctccaca 10198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5708 - 5647
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgttt 66  Q
    ||||||||||||||||| |  ||||||||||||||    ||||||||||||||||  |||||||||    
T  5708 tagcaagtgtactaaaactgcatcgaagtaataaa----ataagttcgtatccacgaggactgttt 5647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1315 - 1351
Alignment:
Q  1 tagcaagtgtactaaaaatatatcgaagtaataaaat 37  Q
    |||||||||||||||||||  ||||||||||||||||    
T  1315 tagcaagtgtactaaaaatgcatcgaagtaataaaat 1351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 2758 - 2710
Alignment:
Q  176 ttggttttagaaaattagagagaagtatggttaagacattcgaatcctc 224  Q
    |||||||||||||||  |||||||| ||||||||| | |||||||||||    
T  2758 ttggttttagaaaatctgagagaagaatggttaagtccttcgaatcctc 2710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 7173 - 7221
Alignment:
Q  176 ttggttttagaaaattagagagaagtatggttaagacattcgaatcctc 224  Q
    |||||||||||||||  |||||||| ||||||||| | |||||||||||    
T  7173 ttggttttagaaaatctgagagaagaatggttaagtccttcgaatcctc 7221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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