View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5560_low_1 (Length: 574)
Name: NF5560_low_1
Description: NF5560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5560_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 100 - 556
Target Start/End: Original strand, 37572119 - 37572575
Alignment:
| Q |
100 |
gtaatcaatcagtgaaagaaagtttttgaagaaccatgttcagaaaaattctcttgttgttgtcttttttctgataatttcttcagcagagagaattgtt |
199 |
Q |
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| T |
37572119 |
gtaatcaatcagtgaaagaaagtttttgaagaaccatgttcagaaaaattctcttgttgttgtcttttttctgataatttcttcagcagagagaattgtt |
37572218 |
T |
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| Q |
200 |
ccatggagaaaacacagtaacctcgttcacaaagctttgtttgtgcaaccggtgagttcaccagaatctgcaaagcttggtttcttttcagcttctccaa |
299 |
Q |
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| T |
37572219 |
ccatggagaaaacacagtaacctcgttcacaaagctttgtttgtgcaaccggtgagttcaccagaatctgcaaagcttggtttcttttcagcttctccaa |
37572318 |
T |
|
| Q |
300 |
gtcatcaaaaacaccaccagaagcagtagttccaccaccgccgtagccgacaccgtaagaaggcattgattgaagaacagataactgtgcctgcaaaaac |
399 |
Q |
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| T |
37572319 |
gtcatcaaaaacaccaccagaagcagtagttccaccaccgccgtagccgacaccgtaagaaggcattgattgaagaacagataactgtgcctgcaaaaac |
37572418 |
T |
|
| Q |
400 |
ttaacatatttgtaagcttcttcataaagagtagcttgatccattctcttgtcccatggcattagtttctgaagacagcgtgttttctcgcttagttttt |
499 |
Q |
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| T |
37572419 |
ttaacgtatttgtaagcttcttcataaagagtagcttgatccattctcttgtcccatggcattagtttctgaagacagcgtgttttctcgcttagttttt |
37572518 |
T |
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| Q |
500 |
gtcttctttgtcttgctaaattgctttgtggaatcaaagaagaaggtggttgtggtg |
556 |
Q |
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| T |
37572519 |
gtcttctttgtcttgctaagttgctttgtggaatcaaagaagaaggtggtggtggtg |
37572575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37572020 - 37572093
Alignment:
| Q |
1 |
cgcttgacagaagcaggtcgagagagcactaagnnnnnnngggttaaacttgaacgaacacgagaaacggtgtc |
74 |
Q |
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| T |
37572020 |
cgcttgacagaagcaggtcgagagagcactaagcaaaaaagggttaaacttgaacgaacacaagaaacggtgtc |
37572093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 153 - 316
Target Start/End: Complemental strand, 37221283 - 37221120
Alignment:
| Q |
153 |
ttgttgttgtcttttttctgataatttcttcagcagagagaattgttccatggagaaaacacagtaacctcgttcacaaagctttgtttgtgcaaccggt |
252 |
Q |
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| T |
37221283 |
ttgttgttgtcttttctatgataattttctgagcaaagagaattgttccatggagaaaacacaataacattgttcacaaagctttgtttttgcaactggt |
37221184 |
T |
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| Q |
253 |
gagttcaccagaatctgcaaagcttggtttcttttcagcttctccaagtcatcaaaaacaccac |
316 |
Q |
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| T |
37221183 |
gagttcaccaaaatctgtaatgcttggtttctgttcagcttctccaagtcatcaaaaacaccac |
37221120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 452 - 526
Target Start/End: Complemental strand, 37221093 - 37221019
Alignment:
| Q |
452 |
cccatggcattagtttctgaagacagcgtgttttctcgcttagtttttgtcttctttgtcttgctaaattgcttt |
526 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |||| ||||||| |
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| T |
37221093 |
cccatggcattagtttctgaagacaacatgttttctcgcttagattttgtcttctttgtctttctaagttgcttt |
37221019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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