View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5560_low_3 (Length: 419)
Name: NF5560_low_3
Description: NF5560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5560_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 45165455 - 45165855
Alignment:
| Q |
1 |
tattatgcttacatgttgtcaactaatagtaaaacctatatttacatttatactgaattttgtgattcagctatcagattttggacttgctgtagcatct |
100 |
Q |
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| T |
45165455 |
tattatgcttacatgttgtcaactaatagtaaaacctatatttacatttatactgaattttgtgattcagctatcagattttggacttgctgtagcatct |
45165554 |
T |
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| Q |
101 |
ggcgtgcaacacaagaacatgaagatgtcgggaactttaggatatgtggcacccgagtacatatcacatggtctatattattagtttttaaattatgatt |
200 |
Q |
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| T |
45165555 |
ggcgtgcaacacaagaacatgaagatgtcgggaactttaggatatgtggcacccgagtacatatcacatggtatatattattagtttttcaattatgatt |
45165654 |
T |
|
| Q |
201 |
atgctaaataaatactgattaggtgcatgagattataattaagctttgactcggactatggaacttgatgttttgttctttttactcaacaaaatttaac |
300 |
Q |
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| T |
45165655 |
atgctaaataaatactgattaggtgcatgagattataattaagctttgactcggactatggaacttgatgttttgttctttttactcaacaaaatttaac |
45165754 |
T |
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| Q |
301 |
aatggtaacttttttcaggtaaactaactgataagagcgatgtctatgctttcggagttgtccttctagaattacttactggaagaaaaccaatgcataa |
400 |
Q |
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| T |
45165755 |
aatggtaacttttttcaggtaaactaactgataagagcgatgtctatgctttcggagttgtccttctagaattacttactggaagaaaaccaatgcataa |
45165854 |
T |
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| Q |
401 |
t |
401 |
Q |
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| T |
45165855 |
t |
45165855 |
T |
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