View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5561-Insertion-1 (Length: 883)

Name: NF5561-Insertion-1
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5561-Insertion-1
NF5561-Insertion-1
[»] chr5 (10 HSPs)
chr5 (420-883)||(1587272-1587735)
chr5 (586-883)||(1590654-1590951)
chr5 (301-396)||(1588267-1588362)
chr5 (692-854)||(1580801-1580963)
chr5 (692-854)||(1603852-1604014)
chr5 (80-197)||(1588841-1588959)
chr5 (195-274)||(1588389-1588468)
chr5 (430-648)||(1581034-1581243)
chr5 (430-648)||(1603572-1603781)
chr5 (20-78)||(1590592-1590652)
[»] chr3 (3 HSPs)
chr3 (420-882)||(19270050-19270533)
chr3 (101-274)||(19268071-19268252)
chr3 (301-353)||(19268279-19268331)
[»] chr7 (2 HSPs)
chr7 (603-854)||(39615906-39616175)
chr7 (301-387)||(39614941-39615029)
[»] chr8 (1 HSPs)
chr8 (198-261)||(8152870-8152933)


Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 420 - 883
Target Start/End: Complemental strand, 1587735 - 1587272
Alignment:
Q  420 ttataacatcacctgattattgtcaagtacaaaatgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 519  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587735 ttataacatcacctggttattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 1587636  T
Q  520 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1587635 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattgtgaactctctaaaagaagggtcca 1587536  T
Q  620 acacgatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgatt 719  Q
    ||||  |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587535 acacagtcacttctaaaccatcctgtttattactttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgatt 1587436  T
Q  720 ttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggc 819  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587435 ttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggc 1587336  T
Q  820 aatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtgg 883  Q
    |||||||||||||||||||||||||||| |||||||||       ||||| |||||||||||||    
T  1587335 aatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtgg 1587272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 586 - 883
Target Start/End: Original strand, 1590654 - 1590951
Alignment:
Q  586 aaagacattctgaactctctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcaa 685  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1590654 aaagacattctgaactctctaaaagaagggtccaacacaatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcga 1590753  T
Q  686 ctttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccatt 785  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1590754 ctttgacttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatcagtgccatt 1590853  T
Q  786 aaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtgg 883  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||| |||||||||||||    
T  1590854 aaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtgg 1590951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 301 - 396
Target Start/End: Complemental strand, 1588362 - 1588267
Alignment:
Q  301 ggaccaacatgatcaaggagaataatctagtcacttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgcaatgctaact 396  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  1588362 ggaccaacatgatcaaggagaataatctagtcccttaaggtgtcagagtcaaatttttaaaagcaacatactataaaacattttgcaatgctaact 1588267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 692 - 854
Target Start/End: Complemental strand, 1580963 - 1580801
Alignment:
Q  692 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 791  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||||||||||| |||||    
T  1580963 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc 1580864  T
Q  792 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc 854  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| ||||||    
T  1580863 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatc 1580801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 692 - 854
Target Start/End: Original strand, 1603852 - 1604014
Alignment:
Q  692 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 791  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||||||||||| |||||    
T  1603852 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc 1603951  T
Q  792 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc 854  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| ||||||    
T  1603952 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatc 1604014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 1588959 - 1588841
Alignment:
Q  80 aaggttggcaaaggccaatactcctaggcagccactgtgaatgtt--gagagccaatccttaaatgatatcgtcacagacgagacgacattaataaaaga 177  Q
    ||||||||||||||| || |||||| ||||||||||| |||||||  |||| |||||||||||||||||||||||| ||||| ||||||||||||||| |    
T  1588959 aaggttggcaaaggctaaaactcctcggcagccactgcgaatgttttgagaaccaatccttaaatgatatcgtcactgacgaaacgacattaataaaa-a 1588861  T
Q  178 tagcaaaaaattaaagttaa 197  Q
    ||||||||||||||||||||    
T  1588860 tagcaaaaaattaaagttaa 1588841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 1588468 - 1588389
Alignment:
Q  195 taacagttgaacatcaaaatcatcataagcagtagaattcaaaccccataaagcaattaaagcttatcttcaagcaattt 274  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1588468 taacagttgaaaatcaaaatcatcataagcagtagaattcagaccccataaagcaattaaagcttatcttcaagcaattt 1588389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 430 - 648
Target Start/End: Complemental strand, 1581243 - 1581034
Alignment:
Q  430 acctgattattgtcaagtacaaaatgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag 529  Q
    |||| ||| ||||| |||| ||| |||||||||  |||||||||||| ||||| ||||||||||||| |||  ||| |||||||||||  |||| ||||     
T  1581243 acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat 1581144  T
Q  530 ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca 628  Q
     ||||||| |  ||| ||||||||||  |||| |          || ||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1581143 gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca 1581054  T
Q  629 cttctaaaccaaccggttta 648  Q
    |||||| ||||||| |||||    
T  1581053 cttctataccaaccagttta 1581034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 430 - 648
Target Start/End: Original strand, 1603572 - 1603781
Alignment:
Q  430 acctgattattgtcaagtacaaaatgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag 529  Q
    |||| ||| ||||| |||| ||| |||||||||  |||||||||||| ||||| ||||||||||||| |||  ||| |||||||||||  |||| ||||     
T  1603572 acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat 1603671  T
Q  530 ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca 628  Q
     ||||||| |  ||| ||||||||||  |||| |          || ||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1603672 gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca 1603761  T
Q  629 cttctaaaccaaccggttta 648  Q
    |||||| ||||||| |||||    
T  1603762 cttctataccaaccagttta 1603781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 1590592 - 1590652
Alignment:
Q  20 tcggttcctaatttaagaaattaccatc--aattatatcccaccacaacagcattttctct 78  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  1590592 tcggttcctaatttaagaaattaccatcaaaattatatcccaccaaaacagcattttctct 1590652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 420 - 882
Target Start/End: Original strand, 19270050 - 19270533
Alignment:
Q  420 ttataacatcacctgattattgtcaagtacaaaatgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 519  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  19270050 ttataacatcacctgattattgtcgagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttaagttttttacccttttcaaaactatttttg 19270149  T
Q  520 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca 619  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  19270150 ctcacaacagttttccaaccatgtacaagactgtaatacttgttaatgcccatgctccacttcctcaacgacattgtgaactctctaaaagaagggtcca 19270249  T
Q  620 acacgatcacttctaaaccaaccggtttatcactttcatcc---------------------ttttctatgtcggtgagaaaatcaactttgacttcttt 698  Q
    |||| ||||||||||||||||| ||||| | | ||||||||                     ||||||||||||||||||||||||||||||||||||||    
T  19270250 acacaatcacttctaaaccaactggtttgttattttcatcctttttagttaaagacacgtctttttctatgtcggtgagaaaatcaactttgacttcttt 19270349  T
Q  699 aagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatc 798  Q
    || || |||||| |||||||||||||||||  |||||| ||| ||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  19270350 aatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatcagtgccattcaactctttgatc 19270449  T
Q  799 ttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtg 882  Q
    |||||||| | |||||||||||||||||||||||| ||||||||||||| |||||| ||       ||||||||||||||||||    
T  19270450 ttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtg 19270533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 101 - 274
Target Start/End: Original strand, 19268071 - 19268252
Alignment:
Q  101 tcctaggcagccactgtgaatgtt--gagagccaatccttaaatgatatc--gtcacagacgagacgacattaataaaagatagcaaaaaattaaagtta 196  Q
    ||||||||||||||||  ||||||  |||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||    
T  19268071 tcctaggcagccactgcaaatgttttgagaaccaatccttaaatgatatctcgtcacagacgagacgacattaataaaagatagcacaaaattaaagtta 19268170  T
Q  197 acagttgaacatcaaaatcatca----taagcagtagaattcaaaccccataaagcaattaaagcttatcttcaagcaattt 274  Q
    ||||||||||||||||| |||||    ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  19268171 acagttgaacatcaaaaccatcataattaagcagtagaattcaaaccctataaagcaatcaaagcttattttcaagcaattt 19268252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 19268279 - 19268331
Alignment:
Q  301 ggaccaacatgatcaaggagaataatctagtcacttaaggtgtcatagccaaa 353  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  19268279 ggaccaacatgatcaaggagaataatctagtcatttaaggtgtcatagtcaaa 19268331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 603 - 854
Target Start/End: Original strand, 39615906 - 39616175
Alignment:
Q  603 tctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttc----------------tatgtc--ggtgagaaaatca 684  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||  |||||||||||||                | ||||  |||||||||| ||    
T  39615906 tctaaaataagggtccaacacaatcacttctaaaccaaccggtttatcgttttcatccttttcatctaaagtctccttttctgtcttggtgagaaaacca 39616005  T
Q  685 actttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccat 784  Q
    | || | |||||||||| ||||||||||||||| ||||| | ||   || |||||||||| ||||||| ||  ||||||||| | |||||||||||||||    
T  39616006 agttcgtcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccat 39616105  T
Q  785 taaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc 854  Q
    | ||||| |||||||||||||  || | |||||| |||||||| |||||| | | |||||||||||||||    
T  39616106 tcaactccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatc 39616175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 301 - 387
Target Start/End: Original strand, 39614941 - 39615029
Alignment:
Q  301 ggaccaacatgatcaaggagaataatctag--tcacttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgca 387  Q
    ||||||||||||||||||| |||||| |||  |||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||    
T  39614941 ggaccaacatgatcaaggaaaataatgtagagtcacctaaggtgtcatagtcaaattgttaaaagcaacataatataaaacattttgca 39615029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 8152933 - 8152870
Alignment:
Q  198 cagttgaacatcaaaatcatcataagcagtagaattcaaaccccataaagcaattaaagcttat 261  Q
    ||||||||||||||||||||||||||||||| |||| || | |||||||| ||| |||||||||    
T  8152933 cagttgaacatcaaaatcatcataagcagtataattaaacctccataaagtaatcaaagcttat 8152870  T

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