View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561-Insertion-12 (Length: 355)
Name: NF5561-Insertion-12
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561-Insertion-12 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 109 - 355
Target Start/End: Original strand, 5932740 - 5932986
Alignment:
| Q |
109 |
cattagacttagcttactaaaacaaaattaaaagccaacaacttttccaaatacaaactgacacattattgaaaaataacaaaatattaaaacaggacac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5932740 |
cattagacttagcttactaaaacaaaattaaaagccagcaacttttccaaatacaaactgacacattattggaaaataacaaaatattaaaacaggacac |
5932839 |
T |
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| Q |
209 |
aaaatcatgaagaatcccataaacatgtctaattccttgaacagctgcaaacaccatcatatcaacgacgaatcatgcaaaagaagagagtcagattcat |
308 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5932840 |
aaaatcatgaagaatctcataaacatgtctaattcctcaaacaactgcaaacaccatcatatcaacgacgaatcacacaaaagaagagagtcagattcat |
5932939 |
T |
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| Q |
309 |
tcccactcctggagcaccaaccaccacacgcgcaccttccttaatcc |
355 |
Q |
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| T |
5932940 |
tcccactcctggagcaccaaccaccacacacgcaccttccttaatcc |
5932986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 5931503 - 5931607
Alignment:
| Q |
7 |
agattctgtgtcgtttaaaagaaagattattccaacagaagtagcccagaagtatacatgaagatggaaagagattagatttaaatgttgcatatacatt |
106 |
Q |
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| T |
5931503 |
agattctgtgtcgtttaaaagaaagattattccaacagaagtagcccagaagtatacatgaagatggaaagagattagatttaaatgttgcatatacatt |
5931602 |
T |
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| Q |
107 |
atcat |
111 |
Q |
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| T |
5931603 |
atcat |
5931607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 19253518 - 19253604
Alignment:
| Q |
269 |
atcaacgacgaatcatgcaaaagaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaatcc |
355 |
Q |
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| T |
19253518 |
atcatcgacgaattatgcaaaagaatagagtcaaattcagtcccactctaggagcaccaaccacaacacgtgcaccttcgttaatcc |
19253604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 109 - 354
Target Start/End: Complemental strand, 18197262 - 18197017
Alignment:
| Q |
109 |
cattagacttagcttactaaaacaaaattaaaagccaacaacttttccaaatacaaactgacacattattgaaaaataacaaaatattaaaacaggacac |
208 |
Q |
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| T |
18197262 |
cattagacttaacttactaaaacaaaattaaaagccaacaacttttccaaatacaaactgacaaattattgaaaaataacaaaatattaaaacaggacac |
18197163 |
T |
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| Q |
209 |
aaaatcatgaagaatcccataaacatgtctaattccttgaacagctgcaaacaccatcatatcaacgacgaatcatgcaaaagaagagagtcagattcat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
18197162 |
aaaatcatgaagaatcccataaacatgtctaattcctcgaacagttgcaaacaccatcatatcaacgaggaatcacgcaaaagaagagagtcagattcat |
18197063 |
T |
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| Q |
309 |
tcccactcctggagcaccaaccaccacacgcgcaccttccttaatc |
354 |
Q |
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||||||| ||||||||||||||||||||| |||| |||||||||| |
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| T |
18197062 |
tcccacttctggagcaccaaccaccacacatgcacattccttaatc |
18197017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 6859 - 6921
Alignment:
| Q |
291 |
gaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaat |
353 |
Q |
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| T |
6859 |
gaagagagtcaaattcatccccacagctggagcccctaccaccacacgagcaccttccttaat |
6921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 15385883 - 15385945
Alignment:
| Q |
291 |
gaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaat |
353 |
Q |
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||||||||||| |||||| ||||| ||||||| || ||||||||||| |||||||||||||| |
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| T |
15385883 |
gaagagagtcaaattcatccccacagctggagcccctaccaccacacgagcaccttccttaat |
15385945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 24325221 - 24325160
Alignment:
| Q |
291 |
gaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaa |
352 |
Q |
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| T |
24325221 |
gaagagagtcaaattcatccccacagctggaacccctaccaccacacgagcaccttccttaa |
24325160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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