View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561-Insertion-13 (Length: 280)
Name: NF5561-Insertion-13
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561-Insertion-13 |
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| [»] chr1 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 38629107 - 38628835
Alignment:
| Q |
8 |
agacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataagttgctccgcactgaaagttgg |
107 |
Q |
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| T |
38629107 |
agacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataagttgctccgcactgaaagttgg |
38629008 |
T |
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| Q |
108 |
tggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgttggtactgagtagtctattctgtcgccactaactttgcga |
207 |
Q |
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| T |
38629007 |
tggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgatggtactgagtagtctattctgccgccactaactttgcga |
38628908 |
T |
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| Q |
208 |
gcaccgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtg |
280 |
Q |
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| T |
38628907 |
gcactgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtg |
38628835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 38697174 - 38697446
Alignment:
| Q |
8 |
agacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataagttgctccgcactgaaagttgg |
107 |
Q |
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| T |
38697174 |
agacaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaaccttttctatcaaaattatcgataagttgctccgcactgaaagttgg |
38697273 |
T |
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| Q |
108 |
tggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgttggtactgagtagtctattctgtcgccactaactttgcga |
207 |
Q |
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| T |
38697274 |
tggtggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgatggtactgagtagtctattctgccgccactaactttgcga |
38697373 |
T |
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| Q |
208 |
gcaccgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtg |
280 |
Q |
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| T |
38697374 |
gcactgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtg |
38697446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 14257595 - 14257539
Alignment:
| Q |
10 |
acaccaatagaatgagcaccagaaagtgtaaccatttcatctactgacaaacctttt |
66 |
Q |
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| T |
14257595 |
acaccaattgaatgtgctcctgagagtgtaaccatttcatcaattgacaaacctttt |
14257539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 280
Target Start/End: Original strand, 30652158 - 30652326
Alignment:
| Q |
111 |
tggtaaattttgtgtgacttcgtcgaagatagacactcgaccatctctgcgtcctgttggtactgagtagtctattctgtcgccactaactttgcgagca |
210 |
Q |
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| T |
30652158 |
tggtagattttgtgttgcttcgtcaaagatagaggttcgaccatctctatgtactgatgctactgagtagtctatgtcgctaccactaactttgcgagta |
30652257 |
T |
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| Q |
211 |
ccgtctcgagctgcaaaagcaagaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtg |
280 |
Q |
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| T |
30652258 |
ctgtctcgagcttgaaaaa-aagaatgtctgcacacaagacagttttaggacatgcggcctctatttgtg |
30652326 |
T |
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