View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561-Insertion-2 (Length: 760)
Name: NF5561-Insertion-2
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 865593 - 865376
Alignment:
| Q |
8 |
caccaggtgatgaagttgttatatcaaagacttgaacatttgtgcatgaatcaaatttgagatgggtttgttgactgttttgaatggttataccactcac |
107 |
Q |
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| T |
865593 |
caccaggtgatgaagttgttatatcaaagacttgaacatttgtgcatgaatcaaatttgagatgggtttgttgactgttttgaatggttataccactcac |
865494 |
T |
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| Q |
108 |
acttacaccatcacttccatagaaccttagtgcctacatataacaaaaatgtcaaaatcacaaatgagagaatcttatagttttaagagattaattttga |
207 |
Q |
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| T |
865493 |
acttacaccatcacttccatagaaccttagtgcctacatataacaaaaatgtcaaaatcacatatgatagaatcttatagttttatgagattaattttga |
865394 |
T |
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| Q |
208 |
tgcaaggtcaatttaaaa |
225 |
Q |
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| T |
865393 |
cgcaaagtcaatttaaaa |
865376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 625 - 760
Target Start/End: Complemental strand, 865036 - 864901
Alignment:
| Q |
625 |
tgcatataaattaaatcatattttaatgataaagaagttcaatgaaatgattattcttaccgttggtttggtttttggtagtttctcactatcattccac |
724 |
Q |
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| T |
865036 |
tgcatataaaatgaatcatattttaatgacatagaaatccaatgctaggactattcttaccgttggtttggtttttggtagtttctcactatcattccac |
864937 |
T |
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| Q |
725 |
caaacagatccttgaccatcaatgacacctttgcct |
760 |
Q |
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| T |
864936 |
caaacagagccttgaccatcaatgacacctttgcct |
864901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 404 - 472
Target Start/End: Complemental strand, 865222 - 865154
Alignment:
| Q |
404 |
ctaatgttaacgttcggacaccaatttgacatgttcaatctatgaattggtctatatctgacaattttt |
472 |
Q |
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| T |
865222 |
ctaatgttaacgtcccaagaccaatttgacattttcaatctataaattggtctatatgtgacaattttt |
865154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 865361 - 865279
Alignment:
| Q |
310 |
aatgattaaacggttatgattgactgactactaaaaatttgttatttagcaaccaatttagtgaccggataattccgatctttgt |
394 |
Q |
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| T |
865361 |
aatgatcaaaccgttgtgattgacttaccactaaaaaata--tatttagcaaccaatttagtgaccgaataattccggtctttgt |
865279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 530
Target Start/End: Original strand, 22237806 - 22237846
Alignment:
| Q |
490 |
tgacttttaaagtagatatgattaaagtaaaatattttaat |
530 |
Q |
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| T |
22237806 |
tgacttttaaggtagatatgattaaagtcaaatattttaat |
22237846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 36655340 - 36655261
Alignment:
| Q |
193 |
agagattaattttgatgcaaggtcaatttaaaaaatttacactcactcaatcaattgtatataatcatttgtatgactttta |
274 |
Q |
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| T |
36655340 |
agagattaattttgatgcagtgtcaatgtaaaaaattgacact--gtcagccaattataaatcatcatttgtatgactttta |
36655261 |
T |
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