View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5561-Insertion-3 (Length: 695)

Name: NF5561-Insertion-3
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5561-Insertion-3
NF5561-Insertion-3
[»] chr1 (14 HSPs)
chr1 (7-695)||(12884844-12885552)
chr1 (454-679)||(12921789-12922014)
chr1 (454-695)||(12956029-12956271)
chr1 (476-695)||(12914491-12914710)
chr1 (483-695)||(12950273-12950485)
chr1 (483-695)||(12942615-12942827)
chr1 (435-695)||(12992249-12992510)
chr1 (293-407)||(12992560-12992675)
chr1 (526-676)||(12893672-12893822)
chr1 (528-664)||(12997910-12998045)
chr1 (291-368)||(12914294-12914371)
chr1 (304-405)||(12942932-12943033)
chr1 (459-562)||(13000911-13001015)
chr1 (211-286)||(12921557-12921632)
[»] chr8 (5 HSPs)
chr8 (339-399)||(14071072-14071132)
chr8 (339-399)||(14073859-14073919)
chr8 (307-399)||(14069500-14069593)
chr8 (609-694)||(14073726-14073811)
chr8 (646-694)||(14069378-14069426)


Alignment Details
Target: chr1 (Bit Score: 589; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 7 - 695
Target Start/End: Original strand, 12884844 - 12885552
Alignment:
Q  7 atgtttaaggtaaacaatgtaacgttgcctcttcat-------------cttgtttgtttaggtagtaacactactctcatttctttacaaggaagaaaa 93  Q
    ||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12884844 atgtttaaggtaaacaatgtaacgttgcctcttcatttaagggagaaatcttgtttgtttaggtagtaacactactctcatttctttacaaggaagaaaa 12884943  T
Q  94 tcttgtaactattttgactggttt--gatgaaatatgaatatcagaggcaagtaagtcatattgtctaagaaatcatcataaatatta-aagagacaaaa 190  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12884944 tcttgtaactattttgactggtttttgatgaaatatgaatatcagaagcaagtaagtcatattgtctaagaaatcatcataaatattataagagacaaaa 12885043  T
Q  191 acaaaccaaagggagaaaagaatcatcaaacaattcctttaactaatagtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtttccc 290  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885044 acaaaccaaagggagaaaaaaatcatcaaacaattcctttaactaatagtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtttccc 12885143  T
Q  291 aaaaaacattaccaaca----atcatagagaaaaaatccaaaggttgacatgattctccttagattcaaatcaaacacagatgtttatagtaccaaaata 386  Q
    |||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885144 aaaaaacattaccaacaaacaatcatagagaaaaaatccaaaggctgacatgattctccttagattcaaatcaaacacagatgtttatagtaccaaaata 12885243  T
Q  387 caatgcttaaaattgtagagcaaatatgtgttcaacttaacatctagttagtatcttaaagaacaatagaacaaacaactaatgggttcttcctataatt 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  12885244 caatgcttaaaattgtagagcaaatatgtgttcaacttaacatctagttagtatcttaaagaacaacacaacaaacaactaatgggttcttcctataatt 12885343  T
Q  487 gaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccacttcgcattcttccataaattttctccatcctttac 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  12885344 gaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccactttgcattcttccataaattttctccatcctttat 12885443  T
Q  587 tgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctattttt 686  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||    
T  12885444 tgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcattacttcctttttt 12885543  T
Q  687 cataaactc 695  Q
    |||||||||    
T  12885544 cataaactc 12885552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 454 - 679
Target Start/End: Original strand, 12921789 - 12922014
Alignment:
Q  454 agaacaaacaactaatgggttcttcctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccactt 553  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||||||    
T  12921789 agaacaaacaactaatggattcatcctataactgaaacatcaaacacaaattttctctcatcaattaacttaaagagacaagtatctccgatctccactt 12921888  T
Q  554 cgcattcttccataaattttctccatcctttactgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccatttt 653  Q
     |||| ||| ||| ||||||||||| |||||||| ||||| ||||   |||||||||| |||||||||||||||||||||||||||| ||  |||| |||    
T  12921889 tgcatgctttcatgaattttctccaacctttactaaacctgcagctccgaacactctcgtaataattgacttttacgaaccatgactgtccccccacttt 12921988  T
Q  654 caactccacaatattttcatgacttc 679  Q
    |||||||| |||||||||||||||||    
T  12921989 caactccaaaatattttcatgacttc 12922014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 454 - 695
Target Start/End: Complemental strand, 12956271 - 12956029
Alignment:
Q  454 agaacaaacaactaatgggttctt-cctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccact 552  Q
    |||||||||| ||||||| ||||| |||  ||||||||||||||||||||||||||  ||||| || |  |||| |||||||||||||||||||||||||    
T  12956271 agaacaaacagctaatggattctttcctgcaattgaaacatcaaacacaaattttcgttcatcaatcaacttaaggagacaagtatctccaatctccact 12956172  T
Q  553 tcgcattcttccataaattttctccatcctttactgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccattt 652  Q
    | |||||||| ||| || |||||||| |||||||||||||| ||||||  || |||||| ||||| || ||||||||||||||||||||||| |||||||    
T  12956171 ttgcattctttcatgaactttctccaacctttactgaacctacagccacaaatactctcgtaatagttcacttttacgaaccatgactttctccccattt 12956072  T
Q  653 tcaactccacaatattttcatgacttctatttttcataaactc 695  Q
    |||||||||||||||||||||||| ||   |||||||||||||    
T  12956071 tcaactccacaatattttcatgacatcctcttttcataaactc 12956029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 476 - 695
Target Start/End: Original strand, 12914491 - 12914710
Alignment:
Q  476 ttcctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccacttcgcattcttccataaattttct 575  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||  ||||| ||||||||||||||||||||||||| || | ||| |||||||| |||    
T  12914491 ttcctacaattgaaacatcaaacacaaatttcctctcatcaattaacttaaaaagacaagtatctccaatctccactttgcctgctttcataaattgtct 12914590  T
Q  576 ccatcctttactgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatga 675  Q
    ||| |||||||||||||| ||||||  || ||||  |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |    
T  12914591 ccaacctttactgaacctacagccacaaagactccgataaaaattgacttttacaaaccatgactttctccccattttcaactccacaatattttcatta 12914690  T
Q  676 cttctatttttcataaactc 695  Q
    | ||  ||||||||||||||    
T  12914691 catccttttttcataaactc 12914710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 483 - 695
Target Start/End: Complemental strand, 12950485 - 12950273
Alignment:
Q  483 aattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccacttcgcattcttccataaattttctccatcct 582  Q
    |||||||||||||||||||||||| || ||||| ||||   ||||||||||||| |||||||||| ||||| |||| ||| |||||||||| |||||||     
T  12950485 aattgaaacatcaaacacaaatttcctttcatcaattaacctaaagagacaagtgtctccaatcttcactttgcatgctttcataaattttgtccatccc 12950386  T
Q  583 ttactgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctat 682  Q
    |||||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| || ||       
T  12950385 ttactgaatctgcagccatgaatactctcataataattgacttttacaaaccatgactttctccccatttttaactccacaatattttcattacatcctc 12950286  T
Q  683 ttttcataaactc 695  Q
    |||||||||||||    
T  12950285 ttttcataaactc 12950273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 483 - 695
Target Start/End: Complemental strand, 12942827 - 12942615
Alignment:
Q  483 aattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccacttcgcattcttccataaattttctccatcct 582  Q
    ||||||||||||||||| |||  |||||||||| || |  |||||||||||| |||||||||||||||||| |||| ||| |||||||| |||||| |||    
T  12942827 aattgaaacatcaaacaaaaaaattctctcatcaatcaacttaaagagacaaatatctccaatctccactttgcatgctttcataaattgtctccaacct 12942728  T
Q  583 ttactgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctat 682  Q
    |||| |||||| ||||||  || ||| |||||||| || ||||||||| ||||||||||||  ||||||||||| ||||| |||||||||| || ||       
T  12942727 ttaccgaacctacagccacaaatactatcataatagttcacttttacgtaccatgactttccccccattttcaattccacgatattttcattacatcccc 12942628  T
Q  683 ttttcataaactc 695  Q
    |||||||||||||    
T  12942627 ttttcataaactc 12942615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 435 - 695
Target Start/End: Complemental strand, 12992510 - 12992249
Alignment:
Q  435 tagtatcttaaagaacaatagaacaaacaactaatgggttctt-cctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagaca 533  Q
    ||||| |||||||||||||||||||| || |||| || || || |||| ||||||||||||||||||||| || |||||||| || |  |||||||||      
T  12992510 tagtaccttaaagaacaatagaacaagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaag 12992411  T
Q  534 agtatctccaatctccacttcgcattcttccataaattttctccatcctttactgaacctccagccatgaacactctcataataattgacttttacgaac 633  Q
    |||||||||||||||||||| ||||||||  || |||| |||||| |||  |  ||| ||  | ||||||| ||| ||||||||||| ||||||||  ||    
T  12992410 agtatctccaatctccactttgcattcttttatgaattgtctccaacctccagagaatctataaccatgaatactatcataataattcacttttacagac 12992311  T
Q  634 catgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactc 695  Q
    |||||   ||  |||||||||||||||| ||  |||||||||||||   |||||||||||||    
T  12992310 catgatcgtccccccattttcaactccagaaagttttcatgacttcctcttttcataaactc 12992249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 293 - 407
Target Start/End: Complemental strand, 12992675 - 12992560
Alignment:
Q  293 aaaacattaccaacaatcatagagaaaaaatccaaaggttga-catgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatg 391  Q
    |||||||||| |||||||||| || ||||||||||||||||| ||||||  | ||||||||||||| ||||| ||| ||||| |  | |||||||||| |    
T  12992675 aaaacattacaaacaatcatatagtaaaaatccaaaggttgatcatgatgttgcttagattcaaatgaaacatagaagtttacaagaacaaaatacaaag 12992576  T
Q  392 cttaaaattgtagagc 407  Q
    |||||||| |||||||    
T  12992575 cttaaaatcgtagagc 12992560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 526 - 676
Target Start/End: Original strand, 12893672 - 12893822
Alignment:
Q  526 aagagacaagtatctccaatctccacttcgcattcttccataaattttctccatcctttactgaacctccagccatgaacactctcataataattgactt 625  Q
    ||||||||||||| ||||| || ||||| ||| | ||||| ||| |||||||| ||||||| ||| || |||||| | | |||   ||||||||| ||||    
T  12893672 aagagacaagtatttccaaacttcactttgcaattttccacaaaatttctccaacctttaccgaatctacagccacggatactaggataataattcactt 12893771  T
Q  626 ttacgaaccatgactttcttcccattttcaactccacaatattttcatgac 676  Q
    ||| ||||||||| | | | || |||||||||||||||| |||||||||||    
T  12893772 ttatgaaccatgattgtatccctattttcaactccacaagattttcatgac 12893822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 528 - 664
Target Start/End: Complemental strand, 12998045 - 12997910
Alignment:
Q  528 gagacaagtatctccaatctccacttcgcattcttccataaattttctccatcctttactgaacctccagccatgaacactctcataataattgactttt 627  Q
    ||||||||||| |||||| ||||||| || |||||||||||||||| |||| ||||||||||||   || ||| ||| |||   ||||||| | ||||||    
T  12998045 gagacaagtatttccaatttccactttgctttcttccataaattttatccaacctttactgaacaaacaaccacgaatactaggataataaatcactttt 12997946  T
Q  628 acgaaccatgactttcttcccattttcaactccacaa 664  Q
    || |||||||| | ||  |||||||||||||||||||    
T  12997945 acaaaccatgattgtc-ccccattttcaactccacaa 12997910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 12914294 - 12914371
Alignment:
Q  291 aaaaaacattaccaacaatcatagagaaaaaatccaaaggttgacatgattctccttagattcaaatcaaacacagat 368  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||| |  ||||| || |||||||| ||||||    
T  12914294 aaaaaacattaccaacaatcatagaacaaaaatccaaaggttgacacgatacctcttaggttaaaatcaaatacagat 12914371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 304 - 405
Target Start/End: Complemental strand, 12943033 - 12942932
Alignment:
Q  304 aacaatcatagagaaaaaatccaaaggttgacatgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaattgta 403  Q
    ||||||||||||  ||| |||| |||| |||||  || || ||||| ||||||||||| ||| ||||||| | |||||||||||| ||||||| ||||||    
T  12943033 aacaatcatagaacaaatatccgaaggctgacaatatacttcttaggttcaaatcaaatacaaatgtttacaataccaaaatacattgcttaatattgta 12942934  T
Q  404 ga 405  Q
    ||    
T  12942933 ga 12942932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 562
Target Start/End: Original strand, 13000911 - 13001015
Alignment:
Q  459 aaacaactaatgggttcttc-ctataattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccacttcgca 557  Q
    ||||| |||||||||||||  ||| ||||||||||| ||||||||||||| ||||||| || |  || |||||||||||||    ||||||||||| |||    
T  13000911 aaacagctaatgggttcttttctacaattgaaacattaaacacaaattttttctcatcaatcaacttcaagagacaagtatggagaatctccactttgca 13001010  T
Q  558 ttctt 562  Q
    |||||    
T  13001011 ttctt 13001015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 12921557 - 12921632
Alignment:
Q  211 aatcatcaaacaattcctttaactaatagtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtt 286  Q
    |||||||||||| ||| ||||| |||||||||||||||  |||| ||||| |||||| | ||||||| ||||||||    
T  12921557 aatcatcaaacagttcttttaaataatagtaaaaaataacatatttgcatgtactaatatatcttcaagccttgtt 12921632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 14071132 - 14071072
Alignment:
Q  339 attctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat 399  Q
    ||||| ||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||    
T  14071132 attctacttagattcaaatcaaatacaaatgtttatggtaacaaaatacaatgcttaaaat 14071072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 339 - 399
Target Start/End: Complemental strand, 14073919 - 14073859
Alignment:
Q  339 attctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat 399  Q
    ||||| ||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||    
T  14073919 attctacttagattcaaatcaaatacaaatgtttatggtaacaaaatacaatgcttaaaat 14073859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 14069593 - 14069500
Alignment:
Q  307 aatcatagagaaaaaatccaaaggttgac-atgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat 399  Q
    |||||||||| |||||| ||||||||||| |  ||||| ||||||||||||| |||  || |||||||| ||| |||||| |||||||||||||    
T  14069593 aatcatagagcaaaaattcaaaggttgactaaaattctacttagattcaaattaaatgcaaatgtttattgtaacaaaatgcaatgcttaaaat 14069500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 694
Target Start/End: Complemental strand, 14073811 - 14073726
Alignment:
Q  609 ctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaact 694  Q
    ||||||| | |||||||||||||||||||| | ||   |||||||||||| |||||||||||||| |  ||  |||||||||||||    
T  14073811 ctcataaaatttgacttttacgaaccatgattatccctccattttcaactacacaatattttcataagatccctttttcataaact 14073726  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 646 - 694
Target Start/End: Complemental strand, 14069426 - 14069378
Alignment:
Q  646 cccattttcaactccacaatattttcatgacttctatttttcataaact 694  Q
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T  14069426 cccattttgaactccacaatattttcatgacatccccttttcataaact 14069378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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