View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5561-Insertion-4 (Length: 635)

Name: NF5561-Insertion-4
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5561-Insertion-4
NF5561-Insertion-4
[»] chr1 (19 HSPs)
chr1 (144-635)||(6668374-6668874)
chr1 (26-127)||(35428503-35428604)
chr1 (31-130)||(5800328-5800427)
chr1 (26-117)||(35050208-35050299)
chr1 (26-127)||(30222891-30222992)
chr1 (26-129)||(40987959-40988062)
chr1 (26-128)||(45192466-45192567)
chr1 (38-128)||(16129850-16129940)
chr1 (26-128)||(16130404-16130506)
chr1 (38-128)||(27654815-27654905)
chr1 (26-129)||(27846535-27846638)
chr1 (40-127)||(34546862-34546949)
chr1 (33-127)||(35121353-35121446)
chr1 (26-87)||(1553915-1553976)
chr1 (38-129)||(4813644-4813733)
chr1 (54-111)||(9412283-9412340)
chr1 (26-92)||(36834429-36834495)
chr1 (26-102)||(23933236-23933312)
chr1 (38-129)||(13878944-13879031)
[»] chr5 (6 HSPs)
chr5 (26-128)||(21262494-21262596)
chr5 (26-130)||(40385124-40385228)
chr5 (29-128)||(33314530-33314629)
chr5 (26-127)||(41174553-41174654)
chr5 (26-129)||(3097439-3097541)
chr5 (38-120)||(24868678-24868760)
[»] chr8 (9 HSPs)
chr8 (26-128)||(8669932-8670034)
chr8 (26-118)||(29226474-29226566)
chr8 (26-128)||(13882283-13882385)
chr8 (26-127)||(45177496-45177598)
chr8 (26-119)||(8107092-8107185)
chr8 (26-115)||(37533966-37534055)
chr8 (26-118)||(35634693-35634785)
chr8 (38-127)||(32305920-32306008)
chr8 (38-130)||(42570115-42570207)
[»] chr2 (17 HSPs)
chr2 (26-128)||(41435501-41435603)
chr2 (26-131)||(42993694-42993800)
chr2 (26-127)||(7105752-7105853)
chr2 (26-127)||(21344974-21345075)
chr2 (38-131)||(22066287-22066380)
chr2 (26-128)||(39778542-39778644)
chr2 (26-118)||(13693432-13693524)
chr2 (26-128)||(25187137-25187239)
chr2 (38-130)||(19926677-19926769)
chr2 (26-117)||(10728196-10728287)
chr2 (38-130)||(28831168-28831260)
chr2 (38-120)||(36191475-36191556)
chr2 (26-122)||(10700122-10700218)
chr2 (38-130)||(41462844-41462936)
chr2 (67-129)||(11964378-11964438)
chr2 (26-76)||(10448917-10448967)
chr2 (144-193)||(42560417-42560466)
[»] chr4 (12 HSPs)
chr4 (26-127)||(43034023-43034124)
chr4 (26-127)||(30537524-30537625)
chr4 (26-127)||(3067925-3068026)
chr4 (26-129)||(26877364-26877467)
chr4 (38-129)||(36187531-36187621)
chr4 (26-128)||(25934545-25934647)
chr4 (38-127)||(783005-783093)
chr4 (26-128)||(22651745-22651847)
chr4 (26-127)||(50150212-50150312)
chr4 (26-127)||(27627951-27628052)
chr4 (144-193)||(32108202-32108251)
chr4 (38-93)||(33313442-33313503)
[»] chr7 (10 HSPs)
chr7 (26-130)||(18674702-18674806)
chr7 (26-128)||(45062654-45062756)
chr7 (26-127)||(7568072-7568173)
chr7 (26-120)||(24989912-24990006)
chr7 (26-112)||(8417896-8417982)
chr7 (26-128)||(41850906-41851008)
chr7 (26-127)||(23319869-23319970)
chr7 (38-127)||(48390213-48390301)
chr7 (38-128)||(48394054-48394144)
chr7 (145-193)||(12837224-12837272)
[»] chr3 (16 HSPs)
chr3 (38-127)||(25095895-25095984)
chr3 (29-127)||(26848053-26848151)
chr3 (26-127)||(48905527-48905628)
chr3 (26-130)||(54748189-54748293)
chr3 (26-112)||(9663814-9663900)
chr3 (26-129)||(35612909-35613012)
chr3 (38-130)||(46320645-46320737)
chr3 (54-121)||(30363808-30363875)
chr3 (26-128)||(20922665-20922767)
chr3 (38-115)||(22515852-22515929)
chr3 (38-128)||(23026176-23026266)
chr3 (39-115)||(50834219-50834295)
chr3 (39-115)||(50841558-50841634)
chr3 (58-122)||(25313559-25313623)
chr3 (67-112)||(49794876-49794921)
chr3 (83-127)||(9663769-9663813)
[»] scaffold0008 (1 HSPs)
scaffold0008 (38-130)||(258215-258307)
[»] chr6 (5 HSPs)
chr6 (38-121)||(1365857-1365939)
chr6 (26-117)||(7243319-7243410)
chr6 (41-120)||(24337916-24337995)
chr6 (144-193)||(14953606-14953655)
chr6 (144-193)||(14957270-14957319)
[»] scaffold0067 (1 HSPs)
scaffold0067 (38-130)||(6916-7008)
[»] scaffold1774 (1 HSPs)
scaffold1774 (144-193)||(1151-1200)
[»] scaffold0057 (2 HSPs)
scaffold0057 (38-105)||(30621-30688)
scaffold0057 (44-105)||(30741-30802)


Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 144 - 635
Target Start/End: Original strand, 6668374 - 6668874
Alignment:
Q  144 taagcatttgtgtaagtgtgtccaaattttttgcatttgggtttgtccctctgtaggactttctcctacattcaatttaatgctccatcacacgtcccca 243  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |  |||||||||||| |||| || |||||||||||||| |||||||    
T  6668374 taagcatttgtgtaagtgtgcccaaactttttgcatttgggtttgttcctctgcacaactttctcctacgttcagttcaatgctccatcacaagtcccca 6668473  T
Q  244 gcacaatgtgttttgaggcaatgccagttttaggctttatgtgggacctcaaagttttgtcatttgtaaaacgtgtttgtcggattgaggagtgtggctg 343  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6668474 acacaatgtgttttgaggcaatgcctgttttaggctttatgtgggacctcaaagttttgtcatttgtaaaacgtgtttgttggattgaggagtgtggctg 6668573  T
Q  344 atgcttataagccatccttacacctcgaatctagtgggattttttggtgtactaaagcaggagcccctagtcaaggtaaaagacctgtcaaccatcattt 443  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6668574 atgcttataaaccatccttacacctcgaatctagtgggattttttggtgtactagagcaggagcccctagtcaaggtaaaagacctgtcaaccatcattt 6668673  T
Q  444 gtggtttaaacctagttttctcatacaataacaatgttgcggataagacgtaaagacggtggccagagttgctcgaatgtggtggagggtgaaggctact 543  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6668674 gtggtttaaacctagttttctcatacaataacaatgttgaggataagatgtaaagacggtggccagagttgctcgaatgtggtggagggtgaaggctact 6668773  T
Q  544 caatagaggggatggtgtacatgtaagtacttcaaccc---------tacgaatttgaaaagagtctagaggtttaaccgaatgataaaatgcacatgtt 634  Q
    |||||||||||||||||||||||||| || ||||||||         | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6668774 caatagaggggatggtgtacatgtaaatatttcaaccctcatgagggtgcgaatttgaaaagagtctagaggtttaaccgaatgataaaatgcacatgtt 6668873  T
Q  635 a 635  Q
    |    
T  6668874 a 6668874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 35428503 - 35428604
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||    
T  35428503 aaatatagaagcgtgttaaatgaagatgactattttcaatgtattttcttgatgttgatgttttatgtcttttgtttcttttataaatgaccggagatag 35428602  T
Q  126 ta 127  Q
    ||    
T  35428603 ta 35428604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 5800427 - 5800328
Alignment:
Q  31 tagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 130  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  5800427 tagaagtgtattaaatgaagatgactattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagtatta 5800328  T

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Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 35050299 - 35050208
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggacc 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  35050299 aaatgtagaagtgtattaaatgaagatgactattttcaatgtattttcttgatgttgatgttttatgtcttttgtttcttgtataaaggacc 35050208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 30222891 - 30222992
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||| ||    
T  30222891 aaatgtagaagtatattaaatgaagatgactattttcaatgtattttcttggtgttgatattttatgtcttttgttttttatataaagaaccggagggag 30222990  T
Q  126 ta 127  Q
    ||    
T  30222991 ta 30222992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 40988062 - 40987959
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||| ||    
T  40988062 aaatgtagaggtgtattaaatgaagataactattttcaatgtatttccttggtcctgatgttttatgtcttttgtttcttgtataaaggaccggaggaag 40987963  T
Q  126 tatt 129  Q
    ||||    
T  40987962 tatt 40987959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 45192567 - 45192466
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||| ||    
T  45192567 aaatgtagaagtatattaaatgaagatgactattttcaatgtattttcttgatgttgatg-tttatgtcttttgtttcttgtataaagaaccggaggaag 45192469  T
Q  126 tat 128  Q
    |||    
T  45192468 tat 45192466  T

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Target: chr1; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 16129940 - 16129850
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 128  Q
    ||||||||||||||| |||||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  16129940 gtattaaatgaagataactattttcaatgtatttccttgattttgatgttttatgtcttttgtttcttgtataaaggaccggagggagtat 16129850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 16130506 - 16130404
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||| |||| | |||||||||||| ||||||||||||| |||||||||||||||| ||    
T  16130506 aaatgtagaggtgtattaaatgaagataactattttcaatgtatttccttgatcttgatgttttatctcttttgtttcttgtataaaggaccggagggag 16130407  T
Q  126 tat 128  Q
    |||    
T  16130406 tat 16130404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 27654815 - 27654905
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 128  Q
    ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  27654815 gtattaaatgaagattactattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttatataaaggatcggagggagtat 27654905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 27846535 - 27846638
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||||| ||||||  ||||||||||||||||||||||||| ||||| ||||| |||| ||    
T  27846535 aaatgtagaagtgtattaaatgaagataactattttcaaagtatttccttggtcctgatgttttatgtcttttgtttcttgtataagggaccagagggag 27846634  T
Q  126 tatt 129  Q
    ||||    
T  27846635 tatt 27846638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 34546862 - 34546949
Alignment:
Q  40 attaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 127  Q
    ||||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  34546862 attaaatgaagataactattttcaatgtatttccttggtcctgatgttttatgtcttttgtttcttgtataaaggaccggagggagta 34546949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 35121353 - 35121446
Alignment:
Q  33 gaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 127  Q
    |||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||| || ||||||||| |||||| ||||    
T  35121353 gaagtgtattaaatgaagatgactatttccaatgtatttt-ttagtcttgatgttttatgtcttttgttttttgtataaaggatcggagggagta 35121446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 1553915 - 1553976
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgtt 87  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  1553915 aaatgtagaagtgtattaaatgaagttgactattttcaatgtattttcttggtgttggtgtt 1553976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 4813733 - 4813644
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatt 129  Q
    ||||||||||||||| |||||||| ||||||||| |||||| ||  || ||||||| ||||||||||| |||||||||||||||| ||||||    
T  4813733 gtattaaatgaagataactatttttaatgtatttccttggtctt--tgatttatgtattttgtttcttatataaaggaccggagggagtatt 4813644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 9412283 - 9412340
Alignment:
Q  54 actattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataa 111  Q
    |||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||    
T  9412283 actattttcaatgtatttccttggtcttgatgttttatgtcttttatttcttgtataa 9412340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 36834429 - 36834495
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatg 92  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||  ||||| ||||| |||||||    
T  36834429 aaatgtagaagtgtattaaataaagatgactatttttaatgtatttctttggtcttgatattttatg 36834495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 23933312 - 23933236
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgttt 102  Q
    ||||||||| |  ||||||| ||| || | ||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  23933312 aaatgtagaggtatattaaaagaaaataattattttcaatgtatttttttggtcttgatgatttatgtcttttgttt 23933236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 13879031 - 13878944
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgtt-gatgttttatgtcttttgtttcttttataaaggaccggaggtagtatt 129  Q
    ||||||||||||||||||||||    |||||||| |||||| || |||||||||||| ||||||||||| |||||| |||  |||| ||||||    
T  13879031 gtattaaatgaagatgactatt----atgtatttccttggttttcgatgttttatgt-ttttgtttcttgtataaaagactcgagggagtatt 13878944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 21262596 - 21262494
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21262596 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 21262497  T
Q  126 tat 128  Q
    |||    
T  21262496 tat 21262494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 40385228 - 40385124
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |  ||||| |||||||||||||||||||||||||| ||||||||| |||||| ||    
T  40385228 aaatgtagaagtgtattaaatgaagatgactattttcaatgtatatctttggtcttgatgttttatgtcttttgtttcttgtataaaggatcggagggag 40385129  T
Q  126 tatta 130  Q
    |||||    
T  40385128 tatta 40385124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 33314530 - 33314629
Alignment:
Q  29 tgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 128  Q
    |||||||  |||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  33314530 tgtagaaatgtattaaatgaagatgaccattttcaatgtatttccttggtcttgatgttttatgtattttgtttcttgtataaaggatcggaggtagtat 33314629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 41174654 - 41174553
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||  ||||||||||||||| ||    
T  41174654 aaatatagaagtatattaaatgaagatgactattttcaatgtatttccttgatcttgatgttttatgtcttttgtttcttgcataaaggaccggaggaag 41174555  T
Q  126 ta 127  Q
    ||    
T  41174554 ta 41174553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 3097541 - 3097439
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||| | |||||||| |||||||||||||||| ||    
T  3097541 aaatgtagaagtgtattaaatgaagattactattttcaatgtatttccttgatcttgatgttttatgtc-tatgtttcttgtataaaggaccggagggag 3097443  T
Q  126 tatt 129  Q
    ||||    
T  3097442 tatt 3097439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 24868678 - 24868760
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccgga 120  Q
    ||||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||| ||||    
T  24868678 gtattaaatgaagattactattttcaatgtattttcttagacttgatgttttatgtcttttgtttcttgtataaaggatcgga 24868760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 9e-44; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 8669932 - 8670034
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8669932 aaatgtagaagtgtattaaatgaagatgactattttcaatgtatttttttggtgttgatgttttatgtcttttgtttcttttataaaggatcggaggtag 8670031  T
Q  126 tat 128  Q
    |||    
T  8670032 tat 8670034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 29226474 - 29226566
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccg 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  29226474 aaatgtagaagtgtattaaatgaagatgactattttcaatgtatttttttggtgttgatgttttatgtcttttgtttcttgtataaaggaccg 29226566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 13882283 - 13882385
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| ||||||||| ||    
T  13882283 aaatgtagaagtgtattaaatgaagatgactattttcaatgtaatttcttggtgttgatgttttatgttttttgtttcttgtataaaagaccggagggag 13882382  T
Q  126 tat 128  Q
    |||    
T  13882383 tat 13882385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 45177598 - 45177496
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgt-attttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggta 124  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |    
T  45177598 aaatgtagaagtgtattaaatgaagatgactattttcaatgttattttcttggtgttgatgttttatgtcttttgttttttgtataaaggatcggaggga 45177499  T
Q  125 gta 127  Q
    |||    
T  45177498 gta 45177496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 8107092 - 8107185
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccgg 119  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  8107092 aaatgtagaagtgtattaaatgaagaggactattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaaggaccgg 8107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 37533966 - 37534055
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaagga 115  Q
    ||||||||||  |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  37533966 aaatgtagaaatgtattaaatgaagatgactatttttaatgtattttcttgatgttgatgttttatgtcttttgtttcttgtataaagga 37534055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 35634785 - 35634693
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccg 118  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||  |||||  ||||||||||||||||||||||||| ||||||||||||    
T  35634785 aaatgtaaaagtgtattaaatgaagataactattttcaatgtatttctttggtactgatgttttatgtcttttgtttcttgtataaaggaccg 35634693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 32305920 - 32306008
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 127  Q
    ||||||||| ||||| ||||||||||||||||||  || || |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  32305920 gtattaaat-aagataactattttcaatgtatttctttagtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagta 32306008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 42570115 - 42570207
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 130  Q
    ||||||||||||||| ||||||||||||||||||  ||| |  | |||||||||||||||| |||||| ||||||||| |||| | |||||||    
T  42570115 gtattaaatgaagataactattttcaatgtatttctttgatcctaatgttttatgtcttttatttcttatataaaggatcggatggagtatta 42570207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 41435603 - 41435501
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  41435603 aaatgtagaagtgtattaaatgaagatgactattttcaatgcattttcttggtgttgatgttttatgttttttgtttcttatataaaggaccggagggag 41435504  T
Q  126 tat 128  Q
    |||    
T  41435503 tat 41435501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 42993800 - 42993694
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtc-ttttgtttcttttataaaggaccggaggta 124  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| |||||||||||||||| |    
T  42993800 aaatatagaagtgtattaaatgaagatgactattttcaatgtatttccttggtcttgatgttttatgtctttttgtttcttgtataaaggaccggaggga 42993701  T
Q  125 gtattaa 131  Q
    |||||||    
T  42993700 gtattaa 42993694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 7105752 - 7105853
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||| |||||||||||||||| ||    
T  7105752 aaatgtagaaatgtattaaatgaagatgactattttcaatgtatttatttggtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggag 7105851  T
Q  126 ta 127  Q
    ||    
T  7105852 ta 7105853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 21345075 - 21344974
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| ||||| ||    
T  21345075 aaatgtagaagtgtaataaatgaagatgactattttcaatgtatttttttggtcttgatgttttatgtcttttgtttcttgtataaaggactggagggag 21344976  T
Q  126 ta 127  Q
    ||    
T  21344975 ta 21344974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 22066380 - 22066287
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattaa 131  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  22066380 gtattaaatgaagatgactattttcaatgtattttattgatgttgatgttttatgtcttttgtttcttgtataaaggacaggagggagtattaa 22066287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 39778644 - 39778542
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||||| ||    
T  39778644 aaatgtagaggtgtattaaatgaagataactattttcaatgtatttccttggtcttgatgttttatgtcttttatttcttgtataaaggaccggagggag 39778545  T
Q  126 tat 128  Q
    |||    
T  39778544 tat 39778542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 13693524 - 13693432
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccg 118  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||    
T  13693524 aaatatagaagtgtattaaatgaagatgactattttcaatgtatttccttgatcttgatgttttatgtcttttgtttcttgtataaaggaccg 13693432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 25187137 - 25187239
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||| ||||||  | ||||||||||||||||||||||| ||||||||||| |||| ||    
T  25187137 aaatgtagaggtgtattaaatgaagataactattttcaatgtatttccttggtcctaatgttttatgtcttttgtttcttgtataaaggaccagagggag 25187236  T
Q  126 tat 128  Q
    |||    
T  25187237 tat 25187239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 19926769 - 19926677
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 130  Q
    ||||||||||||||| | |||||||||||||||| ||||||  |||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  19926769 gtattaaatgaagataaatattttcaatgtatttccttggtcctgatgttttatggcttttgtttcttgtataaaggaccggagggagtatta 19926677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 10728287 - 10728196
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggacc 117  Q
    ||||||||| | ||||||| ||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||    
T  10728287 aaatgtagaggtgtattaactgaagataactattttcaatgtatttccttagtcttgatgttttatgtcttttgtttcttgtataaaggacc 10728196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 28831168 - 28831260
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 130  Q
    ||||||||||||||| ||||||||||||||||||  |||||  ||||||||||| |||||||| |||| |||||||||||||||| |||||||    
T  28831168 gtattaaatgaagataactattttcaatgtatttctttggtcctgatgttttatatcttttgtgtcttgtataaaggaccggagggagtatta 28831260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 36191556 - 36191475
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccgga 120  Q
    ||||||||| ||||| |||||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||    
T  36191556 gtattaaataaagataactattttcaatgtattttcttggtcct-atgttttatgtcttttgtttcttgtataaaggaccgga 36191475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 10700218 - 10700122
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggagg 122  Q
    ||||||||| | |||||||||||| || |||||||||||||||||| ||||||  |||||||||| || ||||||||||| |||||| |||||||||    
T  10700218 aaatgtagaggtgtattaaatgaaaataactattttcaatgtatttccttggtcctgatgttttacgttttttgtttcttatataaaagaccggagg 10700122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 41462844 - 41462936
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 130  Q
    ||||||||||||||| || ||||||||| ||||| |||| | |||||||||||||||| ||||||||| |||||||||||||| | |||||||    
T  41462844 gtattaaatgaagattaccattttcaatatatttccttgatcttgatgttttatgtctgttgtttcttgtataaaggaccggaaggagtatta 41462936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 11964378 - 11964438
Alignment:
Q  67 tattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatt 129  Q
    |||||||||||||||||||||||  |||||||||||||| |||||||||||||||| ||||||    
T  11964378 tattttcttggtgttgatgtttt--gtcttttgtttcttgtataaaggaccggagggagtatt 11964438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 10448917 - 10448967
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttg 76  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  10448917 aaatgtagaagtgtattaaatgaagatgactattttcaatatattttcttg 10448967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 42560466 - 42560417
Alignment:
Q  144 taagcatttgtgtaagtgtgtccaaattttttgcatttgggtttgtccct 193  Q
    ||||||||||||| |||||| ||||| ||||||||| |||||||||||||    
T  42560466 taagcatttgtgtgagtgtgcccaaactttttgcatctgggtttgtccct 42560417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 43034124 - 43034023
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  43034124 aaatgtagaagtgtattaaatgaagatgactattttcaatgtaatttcttggtgttgatgttttatgttttttgtttcttgtataaaggaccggagggag 43034025  T
Q  126 ta 127  Q
    ||    
T  43034024 ta 43034023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 30537625 - 30537524
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||||||    
T  30537625 aaatgtagaaatgtattaaatgaagatgactattttcaatgtatttccttgatcttgatgttttatgtcttttgtttcttgtataaaggaccggaggtag 30537526  T
Q  126 ta 127  Q
    ||    
T  30537525 ta 30537524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 3067925 - 3068026
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| || |||||||||||||||| ||    
T  3067925 aaatgtagaagtgtattaaatgaagatgactattttcaatgtatttccttgatcttgatgttttatgtcttttgtttattgtataaaggaccggagggag 3068024  T
Q  126 ta 127  Q
    ||    
T  3068025 ta 3068026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 26877364 - 26877467
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||| | ||||||| ||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||| ||    
T  26877364 aaatgtagaggtgtattaactgaagataactattttcaatgtatttccttggtcttgatgttttatatcttttgtttcttgtataaaggaccggagggag 26877463  T
Q  126 tatt 129  Q
    ||||    
T  26877464 tatt 26877467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 36187531 - 36187621
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatt 129  Q
    ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  36187531 gtattaaat-aagataactattttcaatgtattttcttggtcttgatgttttatgtcttttgtttcttgtataaaagaccggagggagtatt 36187621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 25934545 - 25934647
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||  || || |||||||||||||||||||||||||| ||||||||| | |||| ||    
T  25934545 aaatatagaagtgtattaaatgaagatgactattttcaatgtatttctttagtcttgatgttttatgtcttttgtttcttgtataaaggatcagaggaag 25934644  T
Q  126 tat 128  Q
    |||    
T  25934645 tat 25934647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 783005 - 783093
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 127  Q
    ||||||||| ||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  783005 gtattaaat-aagataactattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagta 783093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 22651847 - 22651745
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    |||| |||||| |||||||| |||||||| ||||||||||||||||  ||||| | |||||||||||||||||||||||| |||||||||| ||||| ||    
T  22651847 aaatatagaagtgtattaaaagaagatgattattttcaatgtatttctttggtctcgatgttttatgtcttttgtttcttgtataaaggactggagggag 22651748  T
Q  126 tat 128  Q
    |||    
T  22651747 tat 22651745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 50150312 - 50150212
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||| || || || ||||| |||||||||||||| ||||||||| |||||| ||    
T  50150312 aaatgtagaagcatattaaatgaagatgattattttcaatgtattttcttagttttaatatttta-gtcttttgtttcttgtataaaggagcggaggaag 50150214  T
Q  126 ta 127  Q
    ||    
T  50150213 ta 50150212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 27627951 - 27628052
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||   |||||||||||||| |||||||||||||||||| |||| |  ||||||||||||||||||||||||| ||||||| |||| ||| ||    
T  27627951 aaatgtagaaatatattaaatgaagataactattttcaatgtatttccttgatcctgatgttttatgtcttttgtttcttgtataaagaaccgaagggag 27628050  T
Q  126 ta 127  Q
    ||    
T  27628051 ta 27628052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 32108251 - 32108202
Alignment:
Q  144 taagcatttgtgtaagtgtgtccaaattttttgcatttgggtttgtccct 193  Q
    ||||||||||||| |||||||||||| ||||| ||||||||| |||||||    
T  32108251 taagcatttgtgtgagtgtgtccaaactttttacatttgggtctgtccct 32108202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 33313442 - 33313503
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattt------tcttggtgttgatgttttatgt 93  Q
    |||||||||||||||||||||||| |||||||||      ||||||| ||||||||||||||    
T  33313442 gtattaaatgaagatgactatttttaatgtatttctttggtcttggtcttgatgttttatgt 33313503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 18674702 - 18674806
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  18674702 aaatgtagaaatgtattaaatgaagatgactatattcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaaggaccggaggtag 18674801  T
Q  126 tatta 130  Q
    |||||    
T  18674802 tatta 18674806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 45062654 - 45062756
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |||| ||    
T  45062654 aaatgtaaaagtgtattaaatgaagatgactattttcaatgtattttcttgatgttgatgttttatgtcttttgtttcttgtataaaggatcagaggaag 45062753  T
Q  126 tat 128  Q
    |||    
T  45062754 tat 45062756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 7568173 - 7568072
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||||||||||||| ||    
T  7568173 aaatgtagaaatgtattaaatgaagatgactattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtacaaaggaccggagggag 7568074  T
Q  126 ta 127  Q
    ||    
T  7568073 ta 7568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 24989912 - 24990006
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccgga 120  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||    
T  24989912 aaatgtagaagtgtattaaatgaagatgactattttaaatgtattttcttggtattaatgttttatgtcttttgtttcttgtataaaagaccgga 24990006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 8417896 - 8417982
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaa 112  Q
    ||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8417896 aaatgtagaagtgtattaaatgaatatgaatatttttaatgtattttcttggtgttgatgttttatgtcttttgtttcttgtataaa 8417982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 41851008 - 41850906
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||| | ||||||||||||||| || ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||| |||||| ||    
T  41851008 aaatgtagaggtgtattaaatgaagataacaattttcaatgtatttccttggtcctgatgttttatgtcttttgtttcttgtataaaggatcggagggag 41850909  T
Q  126 tat 128  Q
    |||    
T  41850908 tat 41850906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 23319970 - 23319869
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||| | |||||||| |||||| ||||||||||||||| || ||||||  ||||||||||||||||||||||||| |||||||||||||||| ||    
T  23319970 aaatgtagaggtgtattaaacgaagataactattttcaatgtaattccttggtcctgatgttttatgtcttttgtttcttgtataaaggaccggagggag 23319871  T
Q  126 ta 127  Q
    ||    
T  23319870 ta 23319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 48390301 - 48390213
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 127  Q
    ||||||||| ||||| |||||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  48390301 gtattaaat-aagataactattttcaatgtatttccttgatcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagta 48390213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 48394144 - 48394054
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 128  Q
    ||||||||||||||| | |||||||||||||||| ||||||  |||||||||||| |||||||||||| ||||||||| |||||| |||||    
T  48394144 gtattaaatgaagataaatattttcaatgtatttccttggtcctgatgttttatggcttttgtttcttgtataaaggatcggagggagtat 48394054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 12837224 - 12837272
Alignment:
Q  145 aagcatttgtgtaagtgtgtccaaattttttgcatttgggtttgtccct 193  Q
    |||||||||||| |||||||| ||  ||||| |||||||||||||||||    
T  12837224 aagcatttgtgtgagtgtgtctaagctttttacatttgggtttgtccct 12837272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 25095984 - 25095895
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  25095984 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttgtataaaggatcggagggagta 25095895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 26848151 - 26848053
Alignment:
Q  29 tgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 127  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||| ||||    
T  26848151 tgtagaagtgtattaaatgaagatgactattttcaatgtatttttttggtgttgatgttttatgtcttttgtttcttgtataaaagatcggagggagta 26848053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 48905628 - 48905527
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||||||| ||    
T  48905628 aaatgtagaaatgtattaaatgaagatgactattttcaatgtatttccttagtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggag 48905529  T
Q  126 ta 127  Q
    ||    
T  48905528 ta 48905527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 54748189 - 54748293
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||  ||||| ||    
T  54748189 aaatgtagaagtgtattaaatgaagataactattttcaacgtattttcttggtgttgatgttttatgtcttttgtttattgtataaaggattggagggag 54748288  T
Q  126 tatta 130  Q
    |||||    
T  54748289 tatta 54748293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 9663900 - 9663814
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaa 112  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  9663900 aaatgtagaaatgtattaaatgaagatgactattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaa 9663814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 35613012 - 35612909
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||| ||||||  |||||||||||||||||| |||||| |||||||||| ||||| ||    
T  35613012 aaatgtagaggtgtattaaatgaagataactattttcaatgtatttccttggtcctgatgttttatgtcttttatttcttgtataaaggactggagggag 35612913  T
Q  126 tatt 129  Q
    ||||    
T  35612912 tatt 35612909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 46320645 - 46320737
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 130  Q
    |||||||||||| || ||||||||||||||||||  ||||| |||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  46320645 gtattaaatgaatattactattttcaatgtatttctttggtcttgatgttttatgtctgttgtttcttgtataaaggaccggagggagtatta 46320737  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 30363875 - 30363808
Alignment:
Q  54 actattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggag 121  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  30363875 actattttcaatgtattttcttggtcctgatgttttatgtcttttgtttcttgtataaaggaccggag 30363808  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 20922767 - 20922665
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtag 125  Q
    ||||||||| | ||||||||||||||| | |||||||||||||||| ||| ||  | |||||||||||||||||||| || |||||||||||||||| ||    
T  20922767 aaatgtagaggtgtattaaatgaagataaatattttcaatgtatttccttagtcctaatgttttatgtcttttgttttttgtataaaggaccggagggag 20922668  T
Q  126 tat 128  Q
    |||    
T  20922667 tat 20922665  T

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Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 22515852 - 22515929
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaagga 115  Q
    ||||||||||||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||| |||||||||    
T  22515852 gtattaaatgaagataactattttcaatgtatttccttagtcctgatgttttatgtcttttgtttcttgtataaagga 22515929  T

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Target: chr3; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 23026266 - 23026176
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 128  Q
    ||||||||||||||| ||||||||||||||||||  ||| |  |||| |||||||||||||||||||| ||||||||| |||||| |||||    
T  23026266 gtattaaatgaagataactattttcaatgtatttctttgatcctgatattttatgtcttttgtttcttgtataaaggatcggagggagtat 23026176  T

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Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 50834219 - 50834295
Alignment:
Q  39 tattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaagga 115  Q
    |||||||||||||| |||||||||||| ||||| ||| ||  ||||||||||||||||||||||||| |||||||||    
T  50834219 tattaaatgaagataactattttcaatatatttccttagtcctgatgttttatgtcttttgtttcttgtataaagga 50834295  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 50841634 - 50841558
Alignment:
Q  39 tattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaagga 115  Q
    |||||||||||||| |||||||||||| ||||| ||| ||  ||||||||||||||||||||||||| |||||||||    
T  50841634 tattaaatgaagataactattttcaatatatttccttagtcctgatgttttatgtcttttgtttcttgtataaagga 50841558  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 25313559 - 25313623
Alignment:
Q  58 ttttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggagg 122  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||||| |||||| || ||||||    
T  25313559 ttttaaatgtatttttttggtcctgatgttttatgtcttttgtttcttgtataaaagatcggagg 25313623  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 49794921 - 49794876
Alignment:
Q  67 tattttcttggtgttgatgttttatgtcttttgtttcttttataaa 112  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||    
T  49794921 tattttcatggtcttgatgttttatgtcttttgtttcttgtataaa 49794876  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 9663813 - 9663769
Alignment:
Q  83 atgttttatgtcttttgtttcttttataaaggaccggaggtagta 127  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||||    
T  9663813 atgttttatgtcttttgtttcttgtataaaggatcggagggagta 9663769  T

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Target: scaffold0008 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 258307 - 258215
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 130  Q
    ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  258307 gtattaaatgaagattactattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagtatta 258215  T

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Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 1365857 - 1365939
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggag 121  Q
    ||||||||||||||| |||||||||||||||||| ||||||  |||||||| |||||||||||||||| |||||||||||||||    
T  1365857 gtattaaatgaagataactattttcaatgtattt-cttggtcctgatgtttcatgtcttttgtttcttgtataaaggaccggag 1365939  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 7243410 - 7243319
Alignment:
Q  26 aaatgtagaagcgtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggacc 117  Q
    ||||||||| | ||||||||||||||| ||||||||||||||||||  |||||  |||| |||||||||||||||||||| |||||||||||    
T  7243410 aaatgtagaggtgtattaaatgaagataactattttcaatgtatttctttggtcctgatattttatgtcttttgtttcttgtataaaggacc 7243319  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 24337995 - 24337916
Alignment:
Q  41 ttaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccgga 120  Q
    |||||||||||| |||||||||||||||||| ||||||  |||||||||||||||||| |||||| ||||||||||||||    
T  24337995 ttaaatgaagataactattttcaatgtatttccttggtcctgatgttttatgtcttttatttcttgtataaaggaccgga 24337916  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 14953655 - 14953606
Alignment:
Q  144 taagcatttgtgtaagtgtgtccaaattttttgcatttgggtttgtccct 193  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  14953655 taagcatttgtgtgagtgtgtccaaaatttttgcatttgggtttgtccct 14953606  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 14957319 - 14957270
Alignment:
Q  144 taagcatttgtgtaagtgtgtccaaattttttgcatttgggtttgtccct 193  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  14957319 taagcatttgtgtgagtgtgcccaaactttttgcatttgggtttgtccct 14957270  T

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Target: scaffold0067 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 6916 - 7008
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 130  Q
    ||||||||||||||| |||||||||||||||||| |||  | || |||||||||||||||||||||||  |||||| | |||| | |||||||    
T  6916 gtattaaatgaagataactattttcaatgtatttccttaatcttaatgttttatgtcttttgtttcttgaataaagaatcggatggagtatta 7008  T

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Target: scaffold1774 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1774
Description:

Target: scaffold1774; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 1151 - 1200
Alignment:
Q  144 taagcatttgtgtaagtgtgtccaaattttttgcatttgggtttgtccct 193  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  1151 taagcatttgtgtgagtgtgtccaaaatttttgcatttgggtttgtccct 1200  T

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Target: scaffold0057 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 30621 - 30688
Alignment:
Q  38 gtattaaatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttctt 105  Q
    ||||||||| || || |||||||||||||||||| || ||| |||||| |||||||||||||||||||    
T  30621 gtattaaattaaaataactattttcaatgtatttcctcggtcttgatgatttatgtcttttgtttctt 30688  T

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Target: scaffold0057; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 30802 - 30741
Alignment:
Q  44 aatgaagatgactattttcaatgtattttcttggtgttgatgttttatgtcttttgtttctt 105  Q
    |||||| || |||||||||||| ||||| |||||| |||||| |||||||||||||||||||    
T  30802 aatgaaaataactattttcaatttatttccttggtcttgatgatttatgtcttttgtttctt 30741  T

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