View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561-Insertion-5 (Length: 595)
Name: NF5561-Insertion-5
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561-Insertion-5 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 8 - 595
Target Start/End: Original strand, 52712098 - 52712698
Alignment:
| Q |
8 |
ggaaggagttggggatgtaaacaaaaacaaacagatgccaccagcaagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcatcagaaat |
107 |
Q |
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| T |
52712098 |
ggaaggagttggggatgtaaacaaaaacaaacagatgccaccagcaagtgtgatgacaaaactcatcctcttcatggtttggagaaaactcatcagaaat |
52712197 |
T |
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| Q |
108 |
cctaacacatacgcaagtcttatcggacttgtttggtctcttatatcatttgggtattaaaatcttctatctttt-------------------ataacg |
188 |
Q |
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| T |
52712198 |
cctaacacatacgcaagtcttatcggacttgtttggtctcttatatcatttgggtataaaaatcttctatcttttttgtctttatcaatcaattataacg |
52712297 |
T |
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| Q |
189 |
ttggatcatgaataataataatattaaagattttttaaacttcaaataaataatcactgcaggttgcacattgaaatgccctcgattgtaaacggttcca |
288 |
Q |
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| T |
52712298 |
ttggatcatgaataataata---ttaaagattttttaaacttcaaataaat---cactgcaggttgcacattgaaatgccctcgattgtaaacggttcca |
52712391 |
T |
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| Q |
289 |
tctcaatactatctaatgctggtcttggaatggccatgtttagtctaggtttgttcatgggattacaacctaagctgatttcatgtgggnnnnnnnttgc |
388 |
Q |
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| T |
52712392 |
tctcaatactatctaatactggtcttggaatggccatgtttagtctaggtttgttcatgggattacaacctaagctgatttcacgtgggaaaaaaattgc |
52712491 |
T |
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| Q |
389 |
aacatattctatggctgtaaggttcttggtcggtccagctgtgattgcggcaacctcgttagcagttggtctccgtggagttctcttacatgttgcaatt |
488 |
Q |
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| T |
52712492 |
aacatattctatggctgtaaggttcttggtcggtccagctgtgattgcggcaacctcgttagcagttggtctccgtggagttctcttacatgttgcaatt |
52712591 |
T |
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| Q |
489 |
gttcaggtcaaatcaaattcaattaatgactttattctaattagtagtttatcaacataatcatgtttaattacttttgcaggctgctcttccccaagct |
588 |
Q |
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| T |
52712592 |
gttcaggtcaaatcaaattcaattaatgactttattctaattagtagtttatcaacacaatcatgtttaattacttttgcaggctgctcttccccaagct |
52712691 |
T |
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| Q |
589 |
atcgttc |
595 |
Q |
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||||||| |
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| T |
52712692 |
atcgttc |
52712698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 52717695 - 52717852
Alignment:
| Q |
8 |
ggaaggagttggggatgtaaacaaaaacaaacagatgccaccagcaagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcatcagaaat |
107 |
Q |
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| T |
52717695 |
ggaaggaggaggggatgtaagcaaaaatacacagatgccaccagcaagtgtcatgacaagactaatcctcatcatggtttggagaaaactcatcagaaat |
52717794 |
T |
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| Q |
108 |
cctaacacatacgcaagtcttatcggacttgtttggtctcttatatcatttgggtatt |
165 |
Q |
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| T |
52717795 |
cctaatacctactcaagtcttataggacttgtttggtctcttgtatcatttaggtatt |
52717852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 335 - 496
Target Start/End: Original strand, 52718092 - 52718253
Alignment:
| Q |
335 |
aggtttgttcatgggattacaacctaagctgatttcatgtgggnnnnnnnttgcaacatattctatggctgtaaggttcttggtcggtccagctgtgatt |
434 |
Q |
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| T |
52718092 |
aggtctgttcatggctttacagcctaagctgattgcatgtggaaaacgagttgcaacattttctatggctgtaaggttcttgaccggtccagctgtgatt |
52718191 |
T |
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| Q |
435 |
gcggcaacctcgttagcagttggtctccgtggagttctcttacatgttgcaattgttcaggt |
496 |
Q |
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| T |
52718192 |
gcggcaacctcaatagcaattggtatccgtggagttctgttacatgttgcaattgttcaggt |
52718253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 52717929 - 52718021
Alignment:
| Q |
246 |
tgcaggttgcacattgaaatgccctcgattgtaaacggttccatctcaatactatctaatgctggtcttggaatggccatgtttagtctaggt |
338 |
Q |
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| T |
52717929 |
tgcaggtttcacattgaaatgccatccattgtaaaaggttccatctcaatactgtctgatgctggtcttggaatggccatgttcagtctaggt |
52718021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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