View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561-Insertion-6 (Length: 555)
Name: NF5561-Insertion-6
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561-Insertion-6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Original strand, 37497278 - 37497812
Alignment:
| Q |
8 |
ccttcttcagtcttaaaatgttttcgacgatttatctgtggaagtatgcttctattcttctatgattttccataacttgttaatttagtagttaatgtta |
107 |
Q |
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| T |
37497278 |
ccttcttcagtcttaaaatgttttcgacgatttatctgtggaagtatgcttctattcttctatgattttccataacttgttaatttagtagttaatgtta |
37497377 |
T |
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| Q |
108 |
tgctaaagtttcnnnnnnnnggtgttttacttatctgggttgtgttcatttgcagggaaagttgatggaggatcaagaacaaaggaagaagagaaagtgt |
207 |
Q |
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| T |
37497378 |
tgctaaagtttcttttttttggtgttttacttatctgggttgtgttcatttgcagggaaagttgatggaggatcaagaacaaaggaagaagagaaagtgt |
37497477 |
T |
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| Q |
208 |
actcttggttatatacactggctcagtctgnnnnnnncttggtctttgagtatgttagatccactgaaagaggcaagtatctgcattctacaatactact |
307 |
Q |
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| T |
37497478 |
actcttggttatatacactggctcagtctgaaaaaaacttggtctttgagtatgttagatccactgaaagaggcaattatctgcattctacaatactact |
37497577 |
T |
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| Q |
308 |
ttatcaatgaactttgattttataattatcattctttaatttttacaccctctccctacacccaataaaaataactccnnnnnnncaattgtatactgaa |
407 |
Q |
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| T |
37497578 |
ttatcaatgaactttgattttataattatcattctttaatttt-------------tacacccaataaagataacttctttttttcaattgtatactgaa |
37497664 |
T |
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| Q |
408 |
attaaattatggacaaaaaatgtgtcttgaatgcatgttttttgtgcctcttgcgctatgcaaactgtaactactgtgcaaatttttcataaaagaaatt |
507 |
Q |
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| T |
37497665 |
attaaattatggacaaaaaatgtgtcttgaatgcatgttttttgtgccgcttgcgctatgcaaactgtaactactgtgcaaatttttcataaaagaaatt |
37497764 |
T |
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| Q |
508 |
tggagggagaaaattgatactagggctcaactaagattttcattgtgg |
555 |
Q |
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| T |
37497765 |
tggagggagaaaattgatactagggctcaactaagattttcattgtgg |
37497812 |
T |
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