View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5561-Insertion-7 (Length: 525)

Name: NF5561-Insertion-7
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5561-Insertion-7
NF5561-Insertion-7
[»] chr8 (4 HSPs)
chr8 (8-525)||(3509814-3510333)
chr8 (124-525)||(27076499-27076905)
chr8 (41-86)||(31597165-31597210)
chr8 (41-86)||(6927938-6927983)
[»] chr7 (12 HSPs)
chr7 (406-525)||(5952390-5952509)
chr7 (265-414)||(5951495-5951646)
chr7 (123-179)||(5949778-5949834)
chr7 (212-261)||(5949844-5949893)
chr7 (40-86)||(12379302-12379348)
chr7 (41-86)||(15680123-15680168)
chr7 (41-86)||(31072943-31072988)
chr7 (40-86)||(48238115-48238161)
chr7 (49-86)||(6189799-6189836)
chr7 (41-86)||(8069234-8069279)
chr7 (41-86)||(48636360-48636405)
chr7 (41-81)||(19312348-19312388)
[»] chr6 (4 HSPs)
chr6 (41-88)||(9534329-9534376)
chr6 (40-86)||(14677385-14677431)
chr6 (41-86)||(31475174-31475219)
chr6 (39-86)||(20990098-20990146)
[»] chr1 (8 HSPs)
chr1 (40-86)||(26221340-26221386)
chr1 (41-86)||(1347122-1347167)
chr1 (41-86)||(28946215-28946260)
chr1 (47-86)||(34307863-34307902)
chr1 (41-86)||(36296358-36296403)
chr1 (41-86)||(42721895-42721940)
chr1 (42-86)||(9956586-9956630)
chr1 (41-81)||(32179198-32179238)
[»] chr5 (4 HSPs)
chr5 (41-86)||(13383017-13383062)
chr5 (41-86)||(41869418-41869463)
chr5 (40-86)||(38490701-38490747)
chr5 (41-86)||(7849977-7850022)
[»] chr4 (7 HSPs)
chr4 (55-88)||(6262031-6262064)
chr4 (41-86)||(14033730-14033775)
chr4 (41-86)||(14192719-14192764)
chr4 (41-81)||(38052595-38052635)
chr4 (41-86)||(28143851-28143896)
chr4 (41-86)||(49242563-49242608)
chr4 (41-86)||(51337307-51337352)
[»] chr3 (8 HSPs)
chr3 (41-86)||(6025161-6025206)
chr3 (41-86)||(36640723-36640768)
chr3 (42-86)||(10993487-10993531)
chr3 (41-86)||(1420208-1420253)
chr3 (41-86)||(22917793-22917838)
chr3 (41-86)||(23045277-23045322)
chr3 (41-86)||(30376917-30376962)
chr3 (41-86)||(31885350-31885395)
[»] chr2 (8 HSPs)
chr2 (41-86)||(2565275-2565320)
chr2 (41-86)||(18582959-18583004)
chr2 (40-86)||(90730-90776)
chr2 (56-86)||(6221044-6221074)
chr2 (40-86)||(38696797-38696843)
chr2 (41-86)||(7880729-7880774)
chr2 (41-86)||(18781578-18781623)
chr2 (41-86)||(45277882-45277927)
[»] scaffold0016 (1 HSPs)
scaffold0016 (54-86)||(88045-88077)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 525
Target Start/End: Original strand, 3509814 - 3510333
Alignment:
Q  8 aaaaagaggtctgaaaagacatcaaacacttggcagggtcggccccaggcataggccgcgagtgcgacggcctaaggccataggcccatgtctgtagggc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||       |||||||||||||     
T  3509814 aaaaagaggtctgaaaagacatcaaacacttggcagggtcggccctaggcataggccgcgagtgcgacggcctaggacc-------catgtctgtagggg 3509906  T
Q  108 -cctaannnnnnnnacaggggg-tgtataaagcaaagttatggttataaatggggtgtatataacaaatcgtat-agaagggcccaaatcaaaatcttca 204  Q
     |||||        | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||    
T  3509907 gcctaattttttttataggggggtgtataaagcaaagttatggttataaatggggtgtatataacaaatcatattagaagggcccaaatcaaaatcctca 3510006  T
Q  205 tctaggcccatttcttactaacagtagaataaaaacctttagtgaatgcatca---attagcggttgttaggaaacaagcaatttaagactatttatcac 301  Q
    ||||| ||||||||||| |||||||||||||||||  ||||||||||||||||   |||||| |||||||||||||||||||||||||||||||||||||    
T  3510007 tctagacccatttcttaataacagtagaataaaaatatttagtgaatgcatcatcaattagcagttgttaggaaacaagcaatttaagactatttatcac 3510106  T
Q  302 tcttaatgccataattatattag---tatgaaagaaggaaattgtgactctatagtattatctaacacgtttgcctcatcttgtcctgagtgaataaata 398  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  3510107 tcttaatgccataattatattagcattatgaaagaaggaaattgtgactctatagtattatctaacatgtttgcctcatcttgtccttagtgaataaata 3510206  T
Q  399 atcatattttccatttttactactatgctgaatttttactatgactttcaatgtggaatttaatagaatcaagaatgcatattattccattcatttcaac 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3510207 atcatattttccatttttactactatgctgaatttttactatgactttcaatgtggaatttaatagaatcatgaatgcatattattccattcatttcaac 3510306  T
Q  499 cgaccaagatcatagtctttctttccc 525  Q
     ||||||||||||||||||||||||||    
T  3510307 tgaccaagatcatagtctttctttccc 3510333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 124 - 525
Target Start/End: Original strand, 27076499 - 27076905
Alignment:
Q  124 gggggtgtataaagcaaagttatggttataaatggggtgtatataacaaatcgtat-agaagggcccaaatcaaaatcttcatctaggcccatttcttac 222  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||     
T  27076499 gggggtgtataaagcaaagttaaggttatagatggggtgtatataacaaatcgtattagaagggcccaaatcaaaatccttatctaggcccatttattaa 27076598  T
Q  223 taacagtagaataaaaacctttagtgaatgcatcaattagcggttgttaggaaacaagcaatttaagactatttatcactcttaatgccataattatatt 322  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |    
T  27076599 taacagtagaataaaaatctttagtgaatacatcaattagcggttgttaggaaacaagcaatttaagactatttatcactcataatgccataattattat 27076698  T
Q  323 agt-------atgaaagaaggaaattgt-gactctatagtattatctaacacgtttgcctcatcttgtcctgagtgaat-aaataatcatattttccatt 413  Q
    | |       |||||||||||||||||| |||||     ||||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  27076699 atttaacatcatgaaagaaggaaattgtggactc-----tattatctatcaagtttgcctcatcttgtccttagtgaataaaataatcatattttccatt 27076793  T
Q  414 tttactactatgctgaatttttactatgactttcaatgtggaatttaatagaatcaagaatgcatattattccattcatttcaaccgaccaagatcatag 513  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||  |||||||| |||||    
T  27076794 tttaatactatgctgaatttttaccatgactttcaatgtggaatttaatagaatcatgaatacatattattccattcatttcaattgaccaagaccatag 27076893  T
Q  514 tctttctttccc 525  Q
    ||||||||||||    
T  27076894 tctttctttccc 27076905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 31597165 - 31597210
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  31597165 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 31597210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 6927983 - 6927938
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  6927983 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 6927938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 406 - 525
Target Start/End: Original strand, 5952390 - 5952509
Alignment:
Q  406 tttccatttttactactatgctgaatttttactatgactttcaatgtggaatttaatagaatcaagaatgcatattattccattcatttcaaccgaccaa 505  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||  ||||||    
T  5952390 tttccatttttactactatgctgaatttttacaatgactttcaatgtggaatttaatagaatcatgaatgcatattatttcattcattttaattgaccaa 5952489  T
Q  506 gatcatagtctttctttccc 525  Q
    || |||||||||||||||||    
T  5952490 gaccatagtctttctttccc 5952509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 265 - 414
Target Start/End: Original strand, 5951495 - 5951646
Alignment:
Q  265 gttgttaggaaacaagcaatttaagactatttatcactcttaatgccataattatattag---tatgaaagaaggaaattgt-gactctatagtattatc 360  Q
    |||||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||   |||||||||||||||| || |||||  |||| |||||    
T  5951495 gttgttagaaaacaaacaatttaagactatttatcagtcataatgccataattatattagcattatgaaagaaggaaatcgtagactc--tagttttatc 5951592  T
Q  361 taacacgtttgcctcatcttgtcctgagtgaataaataatcatattttccattt 414  Q
    | ||||||||| ||||||||||| | |||||||||||||||||||||| |||||    
T  5951593 tcacacgtttgtctcatcttgtctttagtgaataaataatcatatttttcattt 5951646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 5949778 - 5949834
Alignment:
Q  123 agggggtgtataaagcaaagttatggttataaatggggtgtatataacaaatcgtat 179  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||    
T  5949778 agggggtggataaagcaaagttaaggttatagacggggtgtatataacaaatcgtat 5949834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 5949844 - 5949893
Alignment:
Q  212 ccatttcttactaacagtagaataaaaacctttagtgaatgcatcaatta 261  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  5949844 ccatttcttaataacaatagaataaaaacatttagtgaatgcatcaatta 5949893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 12379302 - 12379348
Alignment:
Q  40 gcagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||||| |||||| |||||||||||||||||||||||||||| ||||    
T  12379302 gcagggccggcccaaggcataggccgcgagtgcgacggcctagggcc 12379348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 15680168 - 15680123
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  15680168 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 15680123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 31072988 - 31072943
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  31072988 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 31072943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 48238115 - 48238161
Alignment:
Q  40 gcagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  48238115 gcagggccggccctaggcataggccacgagtgcgacggcctagggcc 48238161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 6189836 - 6189799
Alignment:
Q  49 gccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  6189836 gccccaggcataggccacgagtgcgacggcctagggcc 6189799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 8069234 - 8069279
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  8069234 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 8069279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 48636360 - 48636405
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  48636360 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 48636405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 19312388 - 19312348
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggccta 81  Q
    ||||| |||||| |||||||||||| |||||||||||||||    
T  19312388 cagggccggccctaggcataggccgtgagtgcgacggccta 19312348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 9534376 - 9534329
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggccat 88  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||    
T  9534376 cagggccggccctaggcataggccgcgagtgcgacggcctaaggccat 9534329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 14677385 - 14677431
Alignment:
Q  40 gcagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||||| |||||| |||||||||||||||||||||||||||| ||||    
T  14677385 gcagggccggccctaggcataggccgcgagtgcgacggcctagggcc 14677431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 31475219 - 31475174
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  31475219 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 31475174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 20990098 - 20990146
Alignment:
Q  39 ggcagggtcggccccagg-cataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||| ||||    
T  20990098 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcc 20990146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 26221340 - 26221386
Alignment:
Q  40 gcagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||||| |||||| |||||||||||||||||||||||||||| ||||    
T  26221340 gcagggccggccctaggcataggccgcgagtgcgacggcctagggcc 26221386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 1347167 - 1347122
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  1347167 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 1347122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 28946260 - 28946215
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||    
T  28946260 cagggccggccctaggcataggccacgagtgcgacggcctaaggcc 28946215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 34307902 - 34307863
Alignment:
Q  47 cggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  34307902 cggccctaggcataggccgcgagtgcgacggcctagggcc 34307863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 36296358 - 36296403
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  36296358 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 36296403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 42721895 - 42721940
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  42721895 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 42721940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 9956586 - 9956630
Alignment:
Q  42 agggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||| |||||| ||||| |||||||||||||||||||||| ||||    
T  9956586 agggccggccctaggcacaggccgcgagtgcgacggcctagggcc 9956630  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 32179238 - 32179198
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggccta 81  Q
    ||||| |||||  ||||||||||||||||||||||||||||    
T  32179238 cagggccggccttaggcataggccgcgagtgcgacggccta 32179198  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 13383062 - 13383017
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  13383062 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 13383017  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 41869418 - 41869463
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  41869418 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 41869463  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 38490701 - 38490747
Alignment:
Q  40 gcagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  38490701 gcagggccggccctaggcataggccacgagtgcgacggcctagggcc 38490747  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 7849977 - 7850022
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  7849977 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 7850022  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 6262064 - 6262031
Alignment:
Q  55 ggcataggccgcgagtgcgacggcctaaggccat 88  Q
    ||||||||||||||||||||||||||||||||||    
T  6262064 ggcataggccgcgagtgcgacggcctaaggccat 6262031  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 14033775 - 14033730
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  14033775 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 14033730  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 14192764 - 14192719
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  14192764 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 14192719  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 38052595 - 38052635
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggccta 81  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  38052595 cagggccggccctaggcataggccgcgagtgcgacggccta 38052635  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 28143896 - 28143851
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  28143896 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 28143851  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 49242563 - 49242608
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||| ||||||||||||||| ||||    
T  49242563 cagggccggccctaggcataggccgggagtgcgacggcctagggcc 49242608  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 51337307 - 51337352
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  51337307 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 51337352  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 6025206 - 6025161
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  6025206 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 6025161  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 36640723 - 36640768
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  36640723 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 36640768  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 10993531 - 10993487
Alignment:
Q  42 agggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||    
T  10993531 agggtcggccctaggcataggccgagagtgtgacggcctaaggcc 10993487  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 1420253 - 1420208
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||| ||||||||||||||||| ||||    
T  1420253 cagggccggccctaggcataggctgcgagtgcgacggcctagggcc 1420208  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 22917793 - 22917838
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||| ||||||||| ||||    
T  22917793 cagggccggccctaggcataggccgcgagtgtgacggcctagggcc 22917838  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 23045322 - 23045277
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  23045322 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 23045277  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 30376917 - 30376962
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| || ||| |||||||||||||||||||||||||||| ||||    
T  30376917 cagggccgaccctaggcataggccgcgagtgcgacggcctagggcc 30376962  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 31885395 - 31885350
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  31885395 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 31885350  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 2565275 - 2565320
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  2565275 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 2565320  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 18583004 - 18582959
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||    
T  18583004 cagggccggccctaggcataggccgcgagtgcgacggcctagggcc 18582959  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 90776 - 90730
Alignment:
Q  40 gcagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  90776 gcagggccggccctaggcataggccacgagtgcgacggcctagggcc 90730  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 6221044 - 6221074
Alignment:
Q  56 gcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||||||||||||||||||||||||||||||    
T  6221044 gcataggccgcgagtgcgacggcctaaggcc 6221074  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 38696797 - 38696843
Alignment:
Q  40 gcagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||||| |||||| |||||||||| ||||||||||||||||| ||||    
T  38696797 gcagggccggccctaggcataggctgcgagtgcgacggcctagggcc 38696843  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 7880774 - 7880729
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  7880774 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 7880729  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 18781623 - 18781578
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  18781623 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 18781578  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 45277927 - 45277882
Alignment:
Q  41 cagggtcggccccaggcataggccgcgagtgcgacggcctaaggcc 86  Q
    ||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  45277927 cagggccggccctaggcataggccacgagtgcgacggcctagggcc 45277882  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 88077 - 88045
Alignment:
Q  54 aggcataggccgcgagtgcgacggcctaaggcc 86  Q
    |||||||||||||||||||||||||||| ||||    
T  88077 aggcataggccgcgagtgcgacggcctagggcc 88045  T

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