View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5561-Insertion-8 (Length: 505)
Name: NF5561-Insertion-8
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561-Insertion-8 |
 | |
|
| [»] chr6 (26 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 26)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 505
Target Start/End: Complemental strand, 6473409 - 6472912
Alignment:
| Q |
8 |
taaagatcaaaacaccttaaaggagtataatttgtattcgaattttttctcaatgtcataaaatcgtccatgagtgaataggcttgaggcttatacttct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
6473409 |
taaagatcaaaacaccttaaaggagtataatttgaattcgagtttttgctcaaggtcataaaatcttccatgagtgcataggcttgaggcttatatttct |
6473310 |
T |
|
| Q |
108 |
tacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcagc |
207 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6473309 |
taccccaaactggatcaatcttagcaagcactgcaattccatagagaaagtaacctaaatgataatgatgatcattataaattccgaacccgaaatcagc |
6473210 |
T |
|
| Q |
208 |
accggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
6473209 |
accggtatcagtagaaccttgtttggttataatacctccccattttttatcatagagaaatccatttccattaaatgttccatcgagccaaggctcggtg |
6473110 |
T |
|
| Q |
308 |
gattccttcaaatacttcttcacaattggaattgcatcaaggtaattcacctcttcagctatcaatgctaatcttgcagctcttgctatcaattttccat |
407 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
6473109 |
gattccttcaaatatttcttcacaattggaattgcatcaaggtaattcacctcttcggctatcaatgctaacctcgcagcccttgctatcaattttccat |
6473010 |
T |
|
| Q |
408 |
aaaagtaagacgatgatgttgttattggtgatgactttagactctcaacatctttcgaaagagctgaaacaatttcgtcatgtgattcttcttttaca |
505 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6473009 |
aaaagtaagatgatgctgttgttatcggtgatgactttagactctcaacatcttttgaaagagctgaaacaatttcgtcatgtgattcttcttttaca |
6472912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 139 - 505
Target Start/End: Complemental strand, 13035977 - 13035611
Alignment:
| Q |
139 |
tgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcagcaccggtatcagtagaaccttgtttggttata |
238 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13035977 |
tgcaattccatagagaaagtaacctaaatgataatgatggtcattataaattccaaacccgaaatcagcaccggtatcagtagaaccttgtttcgttata |
13035878 |
T |
|
| Q |
239 |
atacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatacttcttcacaattggaa |
338 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13035877 |
atacctccccattttttatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaagtacttcttcacaattggaa |
13035778 |
T |
|
| Q |
339 |
ttgcatcaaggtaattcacctcttcagctatcaatgctaatcttgcagctcttgctatcaattttccataaaagtaagacgatgatgttgttattggtga |
438 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
13035777 |
ttgcatcaaggtaattcacctcttcagttatcaatgctaaccttgcagctcttgctatcaattttccataaaagtaagatgatgtcgttgttatcggtga |
13035678 |
T |
|
| Q |
439 |
tgactttagactctcaacatctttcgaaagagctgaaacaatttcgtcatgtgattcttcttttaca |
505 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13035677 |
tgactttagaccttcaacatctttcgaaagagctgaaacaattttgtcatgtgattcttcttttaca |
13035611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 63 - 483
Target Start/End: Original strand, 6526239 - 6526659
Alignment:
| Q |
63 |
tcataaaatcgtccatgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacc |
162 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
6526239 |
tcataaaatcagccatgacagaataggcttgagacttatactttctaccccaaataggatcaatcttagcaagcactgcaattccatagagaaagtatcc |
6526338 |
T |
|
| Q |
163 |
taaatgataatgatgatcattataaattccgaacccgagatcagcaccggtatcagtagaaccttgtttggttataatacctccccattttttatcatag |
262 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | ||||||||||| || |||||||| |||||||||| |||| ||||||||||||||||||| |
|
|
| T |
6526339 |
taaatgataatgatgatcattataaactccgaacccaaaatcagcaccggcatttgtagaaccatgtttggttacaatatctccccattttttatcataa |
6526438 |
T |
|
| Q |
263 |
aggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatacttcttcacaattggaattgcatcaaggtaattcacctctt |
362 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||||| |||||||| || ||||||| |
|
|
| T |
6526439 |
agaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaatactttctaacttttggaatcacatcaaggaaacaaacctctt |
6526538 |
T |
|
| Q |
363 |
cagctatcaatgctaatcttgcagctcttgctatcaattttccataaaagtaagacgatgatgttgttattggtgatgactttagactctcaacatcttt |
462 |
Q |
| |
|
| ||||||||||| | ||||||||||||||| ||||||||||||||||| ||||| ||| |||| |||||| |||||| || || | |||||||| || |
|
|
| T |
6526539 |
ccgctatcaatgcaagtcttgcagctcttgcaatcaattttccataaaaataagatgattttgtttttattgttgatgaattcagtccttcaacatcctt |
6526638 |
T |
|
| Q |
463 |
cgaaagagctgaaacaatttc |
483 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
6526639 |
acaaagtgctgaaacaatttc |
6526659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 9 - 501
Target Start/End: Original strand, 6465146 - 6465638
Alignment:
| Q |
9 |
aaagatcaaaacaccttaaaggagtataatttgtattcgaattttttctcaatgtcataaaatcgtccatgagtgaataggcttgaggcttatacttctt |
108 |
Q |
| |
|
||||||| |||||||||| | | || ||||| | |||| |||| | ||||| |||||||||| ||||||||||||| |||||||||||||||||| | |
|
|
| T |
6465146 |
aaagatcgaaacaccttagacgggtgtaattcgagttcggatttctgctcaagttcataaaatcagccatgagtgaataagcttgaggcttatacttcct |
6465245 |
T |
|
| Q |
109 |
acgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcagca |
208 |
Q |
| |
|
|| |||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| || | ||||||| |
|
|
| T |
6465246 |
accccaaattggatcaatctttgcaagcacagcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccgaatccaaaatcagca |
6465345 |
T |
|
| Q |
209 |
ccggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatgg |
308 |
Q |
| |
|
|| |||||| |||| ||||||||||| | ||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6465346 |
ccagtatcattagacccttgtttggtaacaattcctccccattttccatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatag |
6465445 |
T |
|
| Q |
309 |
attccttcaaatacttcttcacaattggaattgcatcaaggtaattcacctcttcagctatcaatgctaatcttgcagctcttgctatcaattttccata |
408 |
Q |
| |
|
|||||||||| ||||| | | | ||||| |||||||| || ||||||||||| ||||| || || || ||||| || || ||||| || ||||| |
|
|
| T |
6465446 |
tttccttcaaaaacttcctaattttcggaatcacatcaaggaaacaaacctcttcagcaatcaaagccaacctagcagccctagcaatcaacttgccata |
6465545 |
T |
|
| Q |
409 |
aaagtaagacgatgatgttgttattggtgatgactttagactctcaacatctttcgaaagagctgaaacaatttcgtcatgtgattcttcttt |
501 |
Q |
| |
|
|||||||||||| || | ||||| || || || | || |||||||||||| ||||| | |||||||| || ||||| ||||||||||| |
|
|
| T |
6465546 |
aaagtaagacgaattcgtcgctattgcagacgaattcaaaccttcaacatctttcaaaagaacggaaacaatctcatcatgagattcttcttt |
6465638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 505
Target Start/End: Original strand, 6505292 - 6505792
Alignment:
| Q |
8 |
taaagatcaaaacaccttaaaggagtataatttgtattcgaattttttctcaatgtcataaaatcgtccatgagtgaataggcttgaggcttatacttct |
107 |
Q |
| |
|
|||||||| |||||||||||| | |||||||||| ||||| | | | || || |||||||||| |||| |||||||||||||||| |||||| ||| |
|
|
| T |
6505292 |
taaagatcgaaacaccttaaacgcgtataatttgagttcgattctatgcttaagttcataaaatcttccacaagtgaataggcttgagccttatatttcc |
6505391 |
T |
|
| Q |
108 |
tacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcagc |
207 |
Q |
| |
|
||| ||| | ||||| ||||| |||||||||| ||| | |||||||| || ||||| ||| | ||||||||||| ||||||||||| |||| |||| | |
|
|
| T |
6505392 |
taccccatgttggatcgatctttacaagcactgctattgcgtaaagaaaatatcctaagtgaaagtgatgatcattgtaaattccgaaaccgaaatcacc |
6505491 |
T |
|
| Q |
208 |
accggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatg |
307 |
Q |
| |
|
||| |||| |||| ||||||| || |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6505492 |
accaccatcattagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatg |
6505591 |
T |
|
| Q |
308 |
gattccttcaaatacttcttcacaattggaattgcatcaaggtaattcacctcttcagctatcaatgctaatcttgcagctcttgctatcaattttccat |
407 |
Q |
| |
|
| |||||||||| | || | || || ||| ||||||| | | |||||||||||||||||||| | || || |||||||| || |||||||||| |
|
|
| T |
6505592 |
gtttccttcaaaaagtttcttactttttcaatagcatcaaagaagaaaacctcttcagctatcaatgcaagcctagctgctcttgcaattaattttccat |
6505691 |
T |
|
| Q |
408 |
aaaagtaagacgatgatgt---tgttattggtgatgactttagactctcaacatctttcgaaagagctgaaacaatttcgtcatgtgattcttcttttac |
504 |
Q |
| |
|
|||| ||||||||| ||| | || ||| ||||| |||| || ||||||||||| ||||| | |||||||||||| | ||||||| |||||||| |
|
|
| T |
6505692 |
aaaaataagacgattttgtttgttttgttgcagatgagtttaaaccttcaacatctttagaaagtgatgaaacaatttcattgcgtgattcgtcttttac |
6505791 |
T |
|
| Q |
505 |
a |
505 |
Q |
| |
|
| |
|
|
| T |
6505792 |
a |
6505792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 47 - 286
Target Start/End: Complemental strand, 1832116 - 1831877
Alignment:
| Q |
47 |
gaattttttctcaatgtcataaaatcgtccatgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattc |
146 |
Q |
| |
|
|||||| | ||||| ||||||||||| || |||||||||||||||||||||||||||| ||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
1832116 |
gaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttatactctctaccccaaattggatcaatctttgcaagcactgcaattc |
1832017 |
T |
|
| Q |
147 |
cataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcagcaccggtatcagtagaaccttgtttggttataatacctcc |
246 |
Q |
| |
|
|| | |||||||| ||||||||||||||||| || |||| |||||| ||||||| |||| |||| |||| | |||| |||||||||| ||||||| |||| |
|
|
| T |
1832016 |
caaagagaaagtatcctaaatgataatgatggtcgttattaattccaaacccgaaatcaacaccagtattattagacccttgtttggctataatagctcc |
1831917 |
T |
|
| Q |
247 |
ccattttttatcatagaggaatccatttccattaaaagtt |
286 |
Q |
| |
|
|||||| ||| ||||||| | |||||||| || ||||||| |
|
|
| T |
1831916 |
ccatttcttaccatagagaattccatttctatgaaaagtt |
1831877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 6457184 - 6457588
Alignment:
| Q |
7 |
ataaagatcaaaacaccttaaaggagtataatttgtattcgaattttttctcaatgtcataaaatcgtccatgagtgaataggcttgaggcttatacttc |
106 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||| || || ||| ||| || ||| ||||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
6457184 |
ataaagatcgaaacaccttaaacgtgtataatttgagtttgattttcttcctaagttcaggaaatctgccatgagtgaataagcttgaggtttatacttt |
6457283 |
T |
|
| Q |
107 |
ttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcag |
206 |
Q |
| |
|
| | |||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| | ||| | |
|
|
| T |
6457284 |
cttccccaagctggatcaatctttgcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattataaataccgaacccaaaatctg |
6457383 |
T |
|
| Q |
207 |
caccggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaat |
306 |
Q |
| |
|
| || | ||| ||| ||||||||||| || || |||||||||||| |||||| || || |||||| | ||||||||||||| | ||| ||||| || |
|
|
| T |
6457384 |
cccctgaatcttgagagccttgtttggtaatgattcctccccattttccatcataaagaaaaccattttcgttaaaagttccattcaaccatggctcgat |
6457483 |
T |
|
| Q |
307 |
ggattccttcaaatacttcttcacaattggaattgcatcaaggtaattcacctcttcagctatcaatgctaatcttgcagctcttgctatcaattttcca |
406 |
Q |
| |
|
| ||||||||| |||| || | ||| || | ||| || | |||||| ||||||||||||||| | || ||||| || |||||||||||||||||| |
|
|
| T |
6457484 |
cgtttccttcaagaactttttgatcgctggtatggaatcgagatcattcacttcttcagctatcaatcccaaccttgctgcccttgctatcaattttcca |
6457583 |
T |
|
| Q |
407 |
taaaa |
411 |
Q |
| |
|
||||| |
|
|
| T |
6457584 |
taaaa |
6457588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 6528006 - 6528409
Alignment:
| Q |
9 |
aaagatcaaaacaccttaaaggagtataatttgtattcgaattttttctcaatgtcataaaatcgtccatgagtgaataggcttgaggcttatacttctt |
108 |
Q |
| |
|
|||||||||||||||| ||| | | |||||||| ||| || | | ||||| |||||||||| |||| | |||||| ||||||| |||||||||| | |
|
|
| T |
6528006 |
aaagatcaaaacacctaaaacgcgcataatttgagttcaaactcgtgctcaaattcataaaatcttccaataatgaatatgcttgagccttatacttcct |
6528105 |
T |
|
| Q |
109 |
acgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcagca |
208 |
Q |
| |
|
|| |||| |||||||||||||||||||| |||||| |||||| ||| || || ||| | |||||||| |||||||||||| || || |||||| |
|
|
| T |
6528106 |
accccaagctggatcaatcttagcaagcacagcaattgcataaacaaaatatcccaaagtaccatgatgattattataaattccaaaaccatactcagca |
6528205 |
T |
|
| Q |
209 |
ccggtatcagtagaaccttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatgg |
308 |
Q |
| |
|
| ||||||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
6528206 |
tttgaatcagtagagccttgttttgtaataatccctccccattttttatcatagagaaatccattacctttgaaagttccatcaagccaaggctcaatca |
6528305 |
T |
|
| Q |
309 |
attccttcaaatacttcttcac---aa---ttggaattgcatcaaggtaattcacctcttcagctatcaatgctaatcttgcagctcttgctatcaattt |
402 |
Q |
| |
|
||||||||||||||||| || || ||||||| ||||| | || | ||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
6528306 |
tctccttcaaatacttcttaaccttaacctttggaatcacatcatagaaaaaaatctcttcagctatcaaagccaatcttgcagctcttgcaatcaattt |
6528405 |
T |
|
| Q |
403 |
tcca |
406 |
Q |
| |
|
|||| |
|
|
| T |
6528406 |
tcca |
6528409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 236 - 503
Target Start/End: Complemental strand, 6516242 - 6515972
Alignment:
| Q |
236 |
ataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaata-cttcttcacaatt |
334 |
Q |
| |
|
||||| |||||||||||||| ||||| || ||||||||||| |||||||||||||||||||| || ||||| | |||||||||| | |||| | || || |
|
|
| T |
6516242 |
ataattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaagcttc-tgactttt |
6516144 |
T |
|
| Q |
335 |
ggaattgcatcaaggtaattcacctcttcagctatcaatgctaatcttgcagctcttgctatcaattttccataaaagtaagacgatg---atgttgtta |
431 |
Q |
| |
|
|||| || |||| | || | |||||||||||||||||||| ||||| |||||||| ||||||| |||||| |||||||| || | || ||||| |
|
|
| T |
6516143 |
tgaatagcgtcaacgaaaaaaaattcttcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagtaagatgaagtaattgatgtta |
6516044 |
T |
|
| Q |
432 |
ttggtgatgactttagactctcaacatctttcgaaagagctgaaacaatttcgtcatgtgattcttctttta |
503 |
Q |
| |
|
||| |||||| |||| || ||||||||||| |||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
6516043 |
ttgctgatgaatttaaaccttcaacatcttttaaaagcgacgaaacaatttcatcatgtgattcttctttta |
6515972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 122 - 417
Target Start/End: Original strand, 6496599 - 6496894
Alignment:
| Q |
122 |
tcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcagcaccggtatcagtag |
221 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||||||| ||||| |||| | |||||||||||| |||||||| ||| ||||||| | |||| || |
|
|
| T |
6496599 |
tcaatcttagtaagaacagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcattagaatcaacag |
6496698 |
T |
|
| Q |
222 |
aaccttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaata |
321 |
Q |
| |
|
| |||||| |||| | ||| || |||||||| | ||| | || |||||||| ||||| ||||||||||| | |||||||||||||| ||| |||||| | |
|
|
| T |
6496699 |
acccttgtatggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaa |
6496798 |
T |
|
| Q |
322 |
cttcttcacaattggaattgcatcaaggtaattcacctcttcagctatcaatgctaatcttgcagctcttgctatcaattttccataaaagtaaga |
417 |
Q |
| |
|
|||||| || ||||||| |||| | ||| |||||||| ||||||||||| || || || || ||| | |||||||| |||||| ||||||| |
|
|
| T |
6496799 |
cttcttaacctttggaatcacatctaagtatgaaacctcttcggctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaaga |
6496894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 497
Target Start/End: Complemental strand, 6462073 - 6461698
Alignment:
| Q |
122 |
tcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcagcaccggtatcagtag |
221 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||||| || || |||| | | |||||| ||||||||||||| ||| ||||| | ||| ||| |
|
|
| T |
6462073 |
tcaatctttgtaagaactgcaattccataaagaaagtatcccaagtgatcagggtgatcactataaattccgaaaccggagtcagcgttagaatccatag |
6461974 |
T |
|
| Q |
222 |
aaccttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaata |
321 |
Q |
| |
|
| ||||||| ||| | ||| || |||||||| | ||| | || |||||||| ||||| ||||||||||| | |||||||||||||| ||| || ||| | |
|
|
| T |
6461973 |
acccttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaa |
6461874 |
T |
|
| Q |
322 |
cttcttcacaattggaattgcatcaaggtaattcacctcttcagctatcaatgctaatcttgcagctcttgctatcaattttccataaaagtaagacgat |
421 |
Q |
| |
|
|||||| || ||||||| |||| | |||| |||||||||||||||||||| || || || || ||| | |||||||| |||||| ||||||| | |
|
|
| T |
6461873 |
cttcttaacctttggaatcacatctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatct |
6461774 |
T |
|
| Q |
422 |
gatgttgttattggtgatgactttagactctcaacatctttcgaaagagctgaaacaatttcgtcatgtgattctt |
497 |
Q |
| |
|
||| |||||| |||||| | ||||| |||||||||||| |||| | |||||| ||||| ||| | ||||||| |
|
|
| T |
6461773 |
tttgtggttatttttgatgaatctagaccctcaacatcttttaaaagtgatgaaacgatttcatcacgagattctt |
6461698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 1827337 - 1827215
Alignment:
| Q |
44 |
ttcgaattttttctcaatgtcataaaatcgtccatgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaa |
143 |
Q |
| |
|
||||||||| | ||| | |||||||||||| | |||||||||||||||||||||||||| || ||| |||||| | ||||||||| ||||||||||||| |
|
|
| T |
1827337 |
ttcgaatttctactcgaggtcataaaatcggcaatgagtgaataggcttgaggcttatattttctaccccaaattgaatcaatctttgcaagcactgcaa |
1827238 |
T |
|
| Q |
144 |
ttccataaagaaagtaacctaaa |
166 |
Q |
| |
|
||| ||| |||||||| |||||| |
|
|
| T |
1827237 |
ttcgatagagaaagtatcctaaa |
1827215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 6516473 - 6516295
Alignment:
| Q |
8 |
taaagatcaaaacaccttaaaggagtataatttgtattcgaattttttctcaatgtcataaaatcgtccatgagtgaataggcttgaggcttatacttct |
107 |
Q |
| |
|
|||||||| ||| |||||||| | |||||||||| ||||| ||| || || ||||||| || ||||| |||||||||| ||| |||||||||| |
|
|
| T |
6516473 |
taaagatcgaaaaaccttaaacgcgtataatttgagttcgattttaaacttaagttcataaagtcttccataagtgaataggattgtttcttatacttcc |
6516374 |
T |
|
| Q |
108 |
tacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattata |
186 |
Q |
| |
|
||| ||| |||||||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
6516373 |
taccccatgctggatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatgatcattata |
6516295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 356 - 483
Target Start/End: Complemental strand, 6520585 - 6520458
Alignment:
| Q |
356 |
acctcttcagctatcaatgctaatcttgcagctcttgctatcaattttccataaaagtaagacgatgatgttgttattggtgatgactttagactctcaa |
455 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||| || ||||| ||||||||| | |||||||||| ||||| ||| |||||| |||||| ||||| |
|
|
| T |
6520585 |
acctcttcagctattattgctaaccttgcagctctagcaatcaactttccataagaataagacgatgttgttgatatatctgatgaatttagatcctcaa |
6520486 |
T |
|
| Q |
456 |
catctttcgaaagagctgaaacaatttc |
483 |
Q |
| |
|
|||||||| |||| |||||||||||||| |
|
|
| T |
6520485 |
catctttcaaaagtgctgaaacaatttc |
6520458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 1842115 - 1841986
Alignment:
| Q |
47 |
gaattttttctcaatgtcataaaatcgtccatgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattc |
146 |
Q |
| |
|
|||||| | ||||| ||||||||||| | ||||||||||| |||||| || |||||| || |||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
1842115 |
gaatttctactcaaggtcataaaatccttcatgagtgaatccacttgagtctcatactttgtatcccaaattggatcaatcttagcatgcaatgcaattc |
1842016 |
T |
|
| Q |
147 |
cataaagaaagtaacctaaatgataatgat |
176 |
Q |
| |
|
|||| |||||||||| ||||||||| |||| |
|
|
| T |
1842015 |
catagagaaagtaacttaaatgatattgat |
1841986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 1839125 - 1839050
Alignment:
| Q |
135 |
gcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcagcacc |
210 |
Q |
| |
|
|||||||||||| || ||||| || ||||||||||||||||| |||| ||||||||| ||||||| ||||||||| |
|
|
| T |
1839125 |
gcactgcaattcattagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcacc |
1839050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 6523423 - 6523566
Alignment:
| Q |
226 |
ttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatacttc |
325 |
Q |
| |
|
||||||||| | |||| |||||||||| | |||||| || ||||||||| || ||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
6523423 |
ttgtttggtaacaatatctccccatttctgatcatatagaaatccattttatttgaaagttccatcaagccaaggctcaatgatctctttcaaatacttt |
6523522 |
T |
|
| Q |
326 |
ttcacaattggaattgcatcaaggtaattcacctcttcagctat |
369 |
Q |
| |
|
|| || ||| ||| |||||||| || |||||||||||||| |
|
|
| T |
6523523 |
ttaacttttgaaatcacatcaaggaaacaaacctcttcagctat |
6523566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 6520695 - 6520629
Alignment:
| Q |
252 |
ttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaa |
318 |
Q |
| |
|
|||||||||| || || |||||| || |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
6520695 |
ttttatcatatagaaaaccattttcactaaaagttccatcaagccaaggctcaatagtttccttcaa |
6520629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 1845955 - 1845847
Alignment:
| Q |
62 |
gtcataaaatcgtccatgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaac |
161 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||||| | || || |||||| ||||||||||| |||||||||| |||| | || |||||||| | |
|
|
| T |
1845955 |
gtcataaaatctgcaatgagtaaataggcttgaggcttaaattttccaccccaaattggatcaatctttgcaagcactgaaatttcgtagagaaagtatc |
1845856 |
T |
|
| Q |
162 |
ctaaatgat |
170 |
Q |
| |
|
|||||||| |
|
|
| T |
1845855 |
gtaaatgat |
1845847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 6520884 - 6520757
Alignment:
| Q |
63 |
tcataaaatcgtccatgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacc |
162 |
Q |
| |
|
|||| ||||| |||||||||| ||| ||||||||||||||||| | | |||| ||||||| |||||||| || ||||| |||||||| || || || |
|
|
| T |
6520884 |
tcatgaaatcttccatgagtgcataagcttgaggcttatactttcttccccaatcgggatcaagtttagcaagaacagcaataccataaaggaaatatcc |
6520785 |
T |
|
| Q |
163 |
taaatgataatgatgatcattataaatt |
190 |
Q |
| |
|
|||||||| | | ||| ||||||||||| |
|
|
| T |
6520784 |
taaatgattaagctgagcattataaatt |
6520757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 1827207 - 1827157
Alignment:
| Q |
160 |
acctaaatgataatgatgatcattataaattccgaacccgagatcagcacc |
210 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||||| ||||||||| |
|
|
| T |
1827207 |
acctaaatgataatgatggtcgttataaattccaaacccgaaatcagcacc |
1827157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 1841811 - 1841758
Alignment:
| Q |
452 |
tcaacatctttcgaaagagctgaaacaatttcgtcatgtgattcttcttttaca |
505 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
1841811 |
tcaacatatttcaaaagagctgaaacaatttcatcatgaaattcttcttttaca |
1841758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 483
Target Start/End: Complemental strand, 1822280 - 1822168
Alignment:
| Q |
371 |
aatgctaatcttgcagctcttgctatcaattttccataaaagtaagacgatgatgttgttattggtgatgactttagactctcaacatctttcgaaagag |
470 |
Q |
| |
|
||||| || |||||||| || || |||||||| | |||||||||||| || ||||||||||| ||||| || | || |||||||||||| ||| || |
|
|
| T |
1822280 |
aatgccaaccttgcagccctggcaatcaatttactataaaagtaagaagaatttgttgttattgcagatgagttcataccttcaacatctttcaaaatag |
1822181 |
T |
|
| Q |
471 |
ctgaaacaatttc |
483 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1822180 |
ctgaaacaatttc |
1822168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 1822368 - 1822310
Alignment:
| Q |
152 |
agaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcagcacc |
210 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| ||||| | ||||||||| |
|
|
| T |
1822368 |
agaaagtattctaaatgataatgatggtcattataaattcaaaacccaaaatcagcacc |
1822310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 1838939 - 1838886
Alignment:
| Q |
452 |
tcaacatctttcgaaagagctgaaacaatttcgtcatgtgattcttcttttaca |
505 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| |||| |||||||| |||||| |
|
|
| T |
1838939 |
tcaacatctttcaagagagctgaaacaatttcatcattagattcttcatttaca |
1838886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 6523259 - 6523303
Alignment:
| Q |
63 |
tcataaaatcgtccatgagtgaataggcttgaggcttatacttct |
107 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
6523259 |
tcataaaatcttccatgagtgaataaacttgaagcttatacttct |
6523303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 63 - 392
Target Start/End: Complemental strand, 3754139 - 3753810
Alignment:
| Q |
63 |
tcataaaatcgtccatgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaacc |
162 |
Q |
| |
|
|||||||||| | || |||||||| ||||| || |||||||| | | ||||| ||||||||||| ||||| || ||||||||||||||||| ||||| |
|
|
| T |
3754139 |
tcataaaatcttgcaaaagtgaataagcttgtggtttatacttttgtccccaaaatggatcaatctttgcaagaacagcaattccataaagaaaataacc |
3754040 |
T |
|
| Q |
163 |
taaatgataatgatgatcattataaattccgaacccgagatcagcaccggtatcagtagaaccttgtttggtta-taatacctccccattttttatcata |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || | |||| || | | || | || |||||||| || | |||| || ||||||||||| ||||| |
|
|
| T |
3754039 |
taaatgataatgatgatcattataaattccaaaaccaaaatcaacaactgaattattaaccccttgtttagtaactaat-ccaccccattttttttcata |
3753941 |
T |
|
| Q |
262 |
gaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatacttcttcacaattggaattgcatcaaggtaattcacctct |
361 |
Q |
| |
|
| ||| ||||| || || |||||||||| | ||| |||||||| | |||||||||| | ||||| | ||||||||| | | | ||||| || ||| |
|
|
| T |
3753940 |
caagaaaccattccctttgaaagttccattcaaccatggctcaatagtttccttcaaaaaattcttgataattggaatcactttagggtaagatacttct |
3753841 |
T |
|
| Q |
362 |
tcagctatcaatgctaatcttgcagctcttg |
392 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |
|
|
| T |
3753840 |
tcagctatcaatgcaaaccttgcagctcttg |
3753810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 46383283 - 46383404
Alignment:
| Q |
63 |
tcataaaatcgtccatgagtgaataggctt-gaggcttatacttcttacgccaaataggatcaatcttagcaagcactgcaattccataaagaaagtaac |
161 |
Q |
| |
|
|||||| ||| |||||||||||||| |||| ||| |||||||||| ||| |||||||||||||||||| || ||||||| ||||||||| ||| | || | |
|
|
| T |
46383283 |
tcataatatcttccatgagtgaataagctttgagacttatacttcctaccccaaataggatcaatcttggcgagcactgtaattccatagagagaatatc |
46383382 |
T |
|
| Q |
162 |
ctaaatgataatgatgatcatt |
183 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
46383383 |
ctaaatgataatgatgatcatt |
46383404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 4046154 - 4046245
Alignment:
| Q |
118 |
aggatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattataaattccgaacccgagatcagcac |
209 |
Q |
| |
|
||||||||| || ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| || || | |||||||| |
|
|
| T |
4046154 |
aggatcaatttttgcaagaactccaattccataaagaaaataacctaaatgataatgatgatcattatacattccaaaaccaaaatcagcac |
4046245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 459
Target Start/End: Complemental strand, 9665454 - 9665214
Alignment:
| Q |
225 |
cttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatactt |
324 |
Q |
| |
|
|||||||||||| ||| ||||||||||| | |||||| || ||||||||| | || ||||||||||||| ||| || ||||| | ||| |||||| |||| |
|
|
| T |
9665454 |
cttgtttggttacaattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaactt |
9665355 |
T |
|
| Q |
325 |
cttca------caattggaattgcatcaaggtaattcacctcttcagctatcaatgctaatcttgcagctcttgctatcaattttccataaaagtaagac |
418 |
Q |
| |
|
||| | || |||||| ||||| | || || ||||||||||||||||| | || || |||||||| |||||||||||||||||||| || |
|
|
| T |
9665354 |
cttaatcttaacatttggaaccatatcaaagaaaaaaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaa |
9665255 |
T |
|
| Q |
419 |
gatgatgttgttattggtgatgactttagactctcaacatc |
459 |
Q |
| |
|
|||| |||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
9665254 |
gatgttgttgttattaaagatgaatttagaccctcaacatc |
9665214 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 46383849 - 46383914
Alignment:
| Q |
120 |
gatcaatcttagcaagcactgcaattccataaagaaagtaacctaaatgataatgatgatcattata |
186 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| || |||||||||| ||||||||||||||| |
|
|
| T |
46383849 |
gatcaatcttagcaagcac-gcaattccatagagaaaatatcctaaatgatgatgatgatcattata |
46383914 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 9665614 - 9665577
Alignment:
| Q |
68 |
aaatcgtccatgagtgaataggcttgaggcttatactt |
105 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
9665614 |
aaatcttccataagtgaataggcttgaggcttatactt |
9665577 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 459
Target Start/End: Complemental strand, 13536478 - 13536238
Alignment:
| Q |
225 |
cttgtttggttataatacctccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatactt |
324 |
Q |
| |
|
|||||||||||| ||| ||||||||||| | |||||| || ||||||||| | || ||||||||||||| ||| || ||||| | ||| |||||| |||| |
|
|
| T |
13536478 |
cttgtttggttacaattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaactt |
13536379 |
T |
|
| Q |
325 |
cttca------caattggaattgcatcaaggtaattcacctcttcagctatcaatgctaatcttgcagctcttgctatcaattttccataaaagtaagac |
418 |
Q |
| |
|
||| | || |||||| ||||| | || || ||||||||||||||||| | || || |||||||| |||||||||||||||||||| || |
|
|
| T |
13536378 |
cttaatcttaacatttggaaccatatcaaagaaaaaaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaa |
13536279 |
T |
|
| Q |
419 |
gatgatgttgttattggtgatgactttagactctcaacatc |
459 |
Q |
| |
|
|||| |||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
13536278 |
gatgttgttgttattaaagatgaatttagaccctcaacatc |
13536238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 13536638 - 13536601
Alignment:
| Q |
68 |
aaatcgtccatgagtgaataggcttgaggcttatactt |
105 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
13536638 |
aaatcttccataagtgaataggcttgaggcttatactt |
13536601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 501
Target Start/End: Complemental strand, 35231551 - 35231315
Alignment:
| Q |
256 |
atcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatacttcttcacaattggaattgcatcaaggtaattc |
355 |
Q |
| |
|
|||||| || ||||||||| | || | || |||||||||||||||||||||| || |||||||||||||| || ||||||| |||||||| || |
|
|
| T |
35231551 |
atcatatagaaatccattttctttgatagctccatcaagccaaggctcaatgatctctttcaaatacttcttaacttttggaatcacatcaaggaaacaa |
35231452 |
T |
|
| Q |
356 |
acctcttcagctatcaatgctaatcttgcagctcttgctatcaattttccataaaagtaagacgatgatgttgttattggtgatgactttagactctcaa |
455 |
Q |
| |
|
||||||||||||||||| || || |||||| ||||||||||||||||| ||||| || | ||||||| | ||||| ||||| | ||||| |
|
|
| T |
35231451 |
acctcttcagctatcaaagccaaccttgca---------atcaattttccataaaaataagatgaagtccttgttatcgcagatgaatttagtccctcaa |
35231361 |
T |
|
| Q |
456 |
catctttcgaaagagctgaaacaatttcgtcatgtgattcttcttt |
501 |
Q |
| |
|
|||| ||| || || | ||||||||||| | |||| |||||||||| |
|
|
| T |
35231360 |
catcattcaaaggaaccgaaacaatttcataatgtaattcttcttt |
35231315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 35244336 - 35244261
Alignment:
| Q |
63 |
tcataaaatcgtccatgagtgaataggcttgaggcttatacttcttacgccaaataggatcaatcttagcaagcac |
138 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||||||| ||| |||| | |||||||||||| ||||||| |
|
|
| T |
35244336 |
tcataaaatctttcatgagtgaataggcttgagatttatacttcctaccccaagttggatcaatcttaacaagcac |
35244261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 35243203 - 35243075
Alignment:
| Q |
244 |
tccccattttttatcatagaggaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaaatacttcttcacaattggaattgca |
343 |
Q |
| |
|
|||||||| || |||||| | ||| ||||| | || |||||||||||||||||| |||||||| || |||||||||||||| || ||||||| || |
|
|
| T |
35243203 |
tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatgacctctttcaaatacttcttaacttttggaatcaca |
35243104 |
T |
|
| Q |
344 |
tcaaggtaattcacctcttcagctatcaa |
372 |
Q |
| |
|
|||| | || ||||||||||||||||| |
|
|
| T |
35243103 |
tcaaagaaacaaacctcttcagctatcaa |
35243075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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