View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561-Insertion-9 (Length: 459)
Name: NF5561-Insertion-9
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Complemental strand, 43314965 - 43314510
Alignment:
| Q |
8 |
agtacatctttcatttttagtatcatcatcgaatgcaaacatattgttgtgctatagtattgtagtgtgttctgttagcaattcaattcaaattttgtat |
107 |
Q |
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| T |
43314965 |
agtacatctttcatttttagtatcatcatctaatgcaaacatattgttgtgctatagtattgtagtgtgttctgttagcaattcaattcaaattttgtat |
43314866 |
T |
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| Q |
108 |
catttgttgcattcaggcgcgaaaggctcgtagagcactaaaaggattggttaagatccaagctcttgttagagggttcctagttagaaaaagagtttct |
207 |
Q |
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| T |
43314865 |
catttgttgcattcaggcgcgaaaggctcgtagagcactaaaaggattggttaggatccaagctcttgttagagggttcctagttagaaaaagagttgca |
43314766 |
T |
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| Q |
208 |
gcaacacttcacagtatgcaagctctaatgagagctcaagctgttgtccggtcaaggcgagcccgtaattccatcgacaaggagaacatgtatcagccag |
307 |
Q |
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| T |
43314765 |
gcaacacttcatagtatgcaagctctaatgagagctcaagctgttgtccagtcaagacgagcccgtaattccatcgacaaggagaacatgtgtcagccag |
43314666 |
T |
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| Q |
308 |
aaatccgtggacgaaaacatgtggtaattaaagcaacttcttgattcctgtatgccaattcaattggatttcatcaaaattttagtctttatttattcta |
407 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43314665 |
aaatccgtggacgaaaacatgtggtaattaaatcaacttcttgattcctgtatgccaattcaattggatttcatcaaaattttagtctttatttactcta |
43314566 |
T |
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| Q |
408 |
g----nnnnnnnnnnctcttgtagcaaatgttcgatgaaactagaaatcgacaaca |
459 |
Q |
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| T |
43314565 |
gtgttttttttttctctctcgtagcaaatgttcgatgaaactagaaatcgacaaca |
43314510 |
T |
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Back To:
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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 130 - 246
Target Start/End: Original strand, 4609627 - 4609743
Alignment:
| Q |
130 |
aaggctcgtagagcactaaaaggattggttaagatccaagctcttgttagagggttcctagttagaaaaagagtttctgcaacacttcacagtatgcaag |
229 |
Q |
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||||||| ||||||| | ||||||||||||||||| ||||||||||||||||| | || ||||||||||||| | ||||||| |||||||||||||||| |
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| T |
4609627 |
aaggctcttagagcattgaaaggattggttaagatacaagctcttgttagaggctatcttgttagaaaaagagctgctgcaactcttcacagtatgcaag |
4609726 |
T |
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| Q |
230 |
ctctaatgagagctcaa |
246 |
Q |
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| T |
4609727 |
ctctatttagagctcaa |
4609743 |
T |
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