View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561_high_10 (Length: 285)
Name: NF5561_high_10
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 41927962 - 41928200
Alignment:
| Q |
10 |
attatactatctttttaacaagatgaaactgtacctttcttgttatcatgcaatataatacactcatgatgcataataatgttttagttttgatatttat |
109 |
Q |
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| T |
41927962 |
attatactatctttttagcaagatgagattgtacctttcttgttatcatgcaatataatacactcatgatgcataataatgttttagttttgatatttat |
41928061 |
T |
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| Q |
110 |
tttcttgcaagtcatttctcctttctaatgtaaaccattatacaataatataaatgtgttgcaccgaccacgattcaatttcaatgagttttcttagaag |
209 |
Q |
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| T |
41928062 |
tttctggcaagtcatttctcctttctaatgtaaaccattatacaataatataaatgtgttgcaccgaccacgattcaatttcaatgagttttcttagaag |
41928161 |
T |
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| Q |
210 |
agttttacgttacacatgaaaaaagcataatatacttta |
248 |
Q |
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| T |
41928162 |
agttttacgttacacatgaaaaaagcataatatacttta |
41928200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 41910377 - 41910503
Alignment:
| Q |
88 |
atgttttagttttgatatttattttcttgcaagtcatttctcctttctaatgtaaaccattatacaataatataaatgtgttgcaccgaccacgattcaa |
187 |
Q |
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||||||| |||||||||||||||||||| | |||||||||||||| ||| |||| ||||||| | | || | ||||||||||||| || |||||| |
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| T |
41910377 |
atgttttgcttttgatatttattttcttgttaatcatttctcctttcaaatataaaggattataccacattaga--tgtgttgcaccgatcattattcaa |
41910474 |
T |
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| Q |
188 |
tttcaatgagttttcttagaagagtttta |
216 |
Q |
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| T |
41910475 |
tttcaatgagttttcatagatgggtttta |
41910503 |
T |
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